Receptor
PDB id Resolution Class Description Source Keywords
2CJF 1.95 Å EC: 4.2.1.10 TYPE II DEHYDROQUINASE INHIBITOR COMPLEX STREPTOMYCES COELICOLOR DEHYDROQUINASE SHIKIMATE PATHWAY DEHYDROQUINATE DRUG DESIGN LYASE AMINO-ACID BIOSYNTHESIS AROMATIC AMINO ACID BIOSYNTHESIS
Ref.: DESIGN, SYNTHESIS, AND STRUCTURAL STUDIES ON POTENT BIARYL INHIBITORS OF TYPE II DEHYDROQUINASES. CHEMMEDCHEM V. 2 1010 2007
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:1152;
B:1354;
D:1753;
E:1952;
F:2153;
G:2353;
H:2552;
J:2954;
J:2955;
K:3152;
K:3153;
L:3352;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
PO4 B:1352;
F:2152;
G:2352;
J:2952;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
94.971 O4 P [O-]P...
RP4 A:1151;
B:1351;
C:1551;
D:1751;
E:1951;
F:2151;
G:2351;
H:2551;
I:2751;
J:2951;
K:3151;
L:3351;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
Ki = 380 nM
358.408 C19 H18 O5 S c1ccc...
TRS B:1353;
D:1752;
I:2752;
J:2953;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
122.143 C4 H12 N O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2CJF 1.95 Å EC: 4.2.1.10 TYPE II DEHYDROQUINASE INHIBITOR COMPLEX STREPTOMYCES COELICOLOR DEHYDROQUINASE SHIKIMATE PATHWAY DEHYDROQUINATE DRUG DESIGN LYASE AMINO-ACID BIOSYNTHESIS AROMATIC AMINO ACID BIOSYNTHESIS
Ref.: DESIGN, SYNTHESIS, AND STRUCTURAL STUDIES ON POTENT BIARYL INHIBITORS OF TYPE II DEHYDROQUINASES. CHEMMEDCHEM V. 2 1010 2007
Members (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1GTZ - DHK C7 H10 O5 C1[C@@H](C....
2 2BT4 Ki = 33 uM CA2 C16 H22 O6 c1ccc(cc1)....
3 1V1J Ki = 15 uM FA3 C7 H9 F O5 C1[C@H]([C....
4 2CJF Ki = 380 nM RP4 C19 H18 O5 S c1ccc(cc1)....
5 1GU1 Ki = 30 uM FA1 C7 H10 O5 C1[C@H]([C....
70% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 4 families.
1 1GTZ - DHK C7 H10 O5 C1[C@@H](C....
2 2BT4 Ki = 33 uM CA2 C16 H22 O6 c1ccc(cc1)....
3 1V1J Ki = 15 uM FA3 C7 H9 F O5 C1[C@H]([C....
4 2CJF Ki = 380 nM RP4 C19 H18 O5 S c1ccc(cc1)....
5 1GU1 Ki = 30 uM FA1 C7 H10 O5 C1[C@H]([C....
50% Homology Family (17)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2XDA Ki = 0.6 uM JPS C14 H18 O5 S c1c(sc2c1[....
2 2XD9 Ki = 0.35 uM XD9 C12 H14 O5 S CC=Cc1cc2c....
3 2C4W Ki = 20 uM GAJ C14 H9 N5 O4 S c1ccc2c(c1....
4 4B6R Ki = 1420 nM 9ZT C15 H18 O7 COc1ccc(cc....
5 4B6S Ki = 970 nM 2HN C14 H11 F5 O6 C1[C@H]([C....
6 3N76 Ki = 0.14 uM CA2 C16 H22 O6 c1ccc(cc1)....
7 4CIY Ki = 27 uM NDY C15 H18 O6 c1ccc(cc1)....
8 1H0R Ki = 200 uM FA1 C7 H10 O5 C1[C@H]([C....
9 3N86 Ki = 2.3 uM RJP C16 H17 N O6 c1ccc(cc1)....
10 2XB8 Ki = 26 nM XNW C15 H18 O7 COc1ccc(cc....
11 1H0S - FA6 C7 H11 N O6 C1[C@H]([C....
12 4B6Q Ki = 28 nM BZ5 C16 H16 O6 S c1cc2c(ccs....
13 2Y77 Ki = 250 nM CB8 C21 H20 O6 S2 c1ccc2c(c1....
14 2BT4 Ki = 33 uM CA2 C16 H22 O6 c1ccc(cc1)....
15 1V1J Ki = 15 uM FA3 C7 H9 F O5 C1[C@H]([C....
16 2CJF Ki = 380 nM RP4 C19 H18 O5 S c1ccc(cc1)....
17 1GU1 Ki = 30 uM FA1 C7 H10 O5 C1[C@H]([C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RP4; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 RP4 1 1
2 N87 0.565789 0.868421
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2cjf.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2cjf.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2cjf.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2cjf.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 9; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 9) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 10; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 10) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 11; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 11) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 12; Query (leader) PDB : 2CJF; Ligand: RP4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 12) in the query (biounit: 2cjf.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
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