Receptor
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CLA A:1327;
A:1328;
Part of Protein;
Part of Protein;
none;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
DGD A:1332;
A:1336;
Valid;
Valid;
none;
none;
submit data
949.299 C51 H96 O15 CCCCC...
MG A:1337;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
PID A:1329;
A:1330;
A:1331;
A:1333;
A:1334;
A:1335;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1256 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1068 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DGD; Similar ligands found: 61
No: Ligand ECFP6 Tc MDL keys Tc
1 DGD 1 1
2 1O2 0.776471 0.934783
3 3TF 0.767442 0.934783
4 1L2 0.709677 0.934783
5 SQD 0.678161 0.68254
6 GGD 0.64 0.978261
7 J7Z 0.62 0.934783
8 PII 0.494624 0.722222
9 TGL 0.493506 0.608696
10 LTC 0.475 0.762712
11 PIF 0.46875 0.709091
12 PGT 0.467391 0.618182
13 LHG 0.467391 0.618182
14 PIZ 0.464646 0.690909
15 GM3 0.464646 0.763636
16 0SH 0.455446 0.75
17 AGH 0.455446 0.75
18 PBS 0.455446 0.75
19 FEE 0.455446 0.75
20 IP9 0.454545 0.690909
21 PIO 0.454545 0.709091
22 52N 0.454545 0.709091
23 L2C 0.451219 0.688889
24 DGA 0.451219 0.688889
25 DDR 0.451219 0.688889
26 B7N 0.45098 0.709091
27 LBR 0.448276 0.638298
28 PIE 0.446602 0.690909
29 MAN MMA 0.439024 0.73913
30 20S 0.435644 0.875
31 MAN MAN MAN 0.433735 0.733333
32 GLC GLC GLC 0.433735 0.733333
33 GLC GLC GLC GLC GLC BGC 0.433735 0.733333
34 GLC GLC GLC GLC BGC 0.433735 0.733333
35 PGW 0.425743 0.607143
36 DR4 0.422222 0.847826
37 XNS 0.422222 0.847826
38 DR9 0.421569 0.607143
39 PGV 0.421569 0.607143
40 03F 0.420561 0.736842
41 DGG 0.419048 0.642857
42 JLS 0.418182 0.736842
43 P6L 0.417476 0.607143
44 HSJ 0.416667 0.888889
45 BOG 0.416667 0.888889
46 BNG 0.416667 0.888889
47 OZ2 0.413462 0.607143
48 AGA 0.412371 0.618182
49 LAK 0.409639 0.733333
50 BMA GLA 0.409639 0.733333
51 GLA BGC 0.409639 0.733333
52 BGC GLA 0.409639 0.733333
53 GLA BMA 0.409639 0.733333
54 MAN BMA 0.409639 0.733333
55 MLB 0.409639 0.733333
56 GLA GLC 0.409639 0.733333
57 GAL GAL 0.409639 0.733333
58 T7X 0.409091 0.709091
59 KGM 0.404762 0.888889
60 B7G 0.404762 0.888889
61 GAL SPH NER 0.40367 0.719298
Ligand no: 2; Ligand: PID; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 NEX 0.438017 0.818182
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2c9e.bio1) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2c9e.bio1) has 18 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2c9e.bio1) has 21 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found: 4
This union binding pocket(no: 6) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5FCB AMP 0.02145 0.40213 3.36391
2 4UCC ZKW 0.02365 0.42044 4.29185
3 1LNX URI 0.02606 0.40022 6.17284
4 2D5Z L35 0.02907 0.42125 21.9858
Pocket No.: 7; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2c9e.bio1) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found: 18
This union binding pocket(no: 8) in the query (biounit: 2c9e.bio1) has 24 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1JGS SAL 0.001186 0.48745 None
2 1UO5 PIH 0.02113 0.41587 None
3 2QES ADE 0.02156 0.41555 1.53257
4 1XM4 PIL 0.01291 0.40768 2.14067
5 1XMU ROF 0.01492 0.40098 2.14067
6 3TDC 0EU 0.02845 0.40878 3.0581
7 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 0.02175 0.41937 3.06122
8 3KU0 ADE 0.01965 0.41669 3.18725
9 3B9Z CO2 0.03147 0.42051 3.36391
10 1GEG GLC 0.02042 0.44201 3.51562
11 3BPX SAL 0.02182 0.41343 4.05405
12 4UCC ZKW 0.0229 0.41598 4.29185
13 3WYJ H78 0.03297 0.40193 6.32411
14 4F4S EFO 0.004209 0.44557 6.57895
15 4XCP PLM 0.02701 0.40294 7.05882
16 5UC9 MYR 0.02144 0.41159 7.07965
17 3LE7 ADE 0.03099 0.40543 7.66284
18 2PSM BAM 0.002398 0.43601 10.2564
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