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Receptor
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CLA A:1327;
A:1328;
Part of Protein;
Part of Protein;
none;
none;
submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
DGD A:1332;
A:1336;
Valid;
Valid;
none;
none;
submit data
949.299 C51 H96 O15 CCCCC...
MG A:1337;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
PID A:1329;
A:1330;
A:1331;
A:1333;
A:1334;
A:1335;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: DGD; Similar ligands found: 72
No: Ligand ECFP6 Tc MDL keys Tc
1 DGD 1 1
2 1O2 0.776471 0.934783
3 3TF 0.767442 0.934783
4 1L2 0.709677 0.934783
5 SQD 0.678161 0.68254
6 GGD 0.64 0.978261
7 J7Z 0.62 0.934783
8 PII 0.494624 0.722222
9 TGL 0.493506 0.608696
10 LTC 0.475 0.762712
11 PIF 0.46875 0.709091
12 PGT 0.467391 0.618182
13 LHG 0.467391 0.618182
14 PIZ 0.464646 0.690909
15 GM3 0.464646 0.763636
16 PBS 0.455446 0.75
17 FEE 0.455446 0.75
18 F61 0.455446 0.75
19 AGH 0.455446 0.75
20 0SH 0.455446 0.75
21 PIO 0.454545 0.709091
22 52N 0.454545 0.709091
23 IP9 0.454545 0.690909
24 FAW 0.451219 0.688889
25 DGA 0.451219 0.688889
26 L2C 0.451219 0.688889
27 DDR 0.451219 0.688889
28 B7N 0.45098 0.709091
29 LBR 0.448276 0.638298
30 PIE 0.446602 0.690909
31 MAN MMA 0.439024 0.73913
32 9R2 0.436782 0.866667
33 20S 0.435644 0.875
34 BMA MAN MAN 0.433735 0.733333
35 GLC GLC GLC 0.433735 0.733333
36 GLC GLC GLC GLC GLC BGC 0.433735 0.733333
37 GLC GLC GLC GLC BGC 0.433735 0.733333
38 MAN MAN MAN 0.433735 0.733333
39 D3D 0.425743 0.607143
40 PGW 0.425743 0.607143
41 DR4 0.422222 0.847826
42 XNS 0.422222 0.847826
43 DR9 0.421569 0.607143
44 PGV 0.421569 0.607143
45 03F 0.420561 0.736842
46 DGG 0.419048 0.642857
47 JLS 0.418182 0.736842
48 P6L 0.417476 0.607143
49 BOG 0.416667 0.888889
50 HSJ 0.416667 0.888889
51 BNG 0.416667 0.888889
52 OZ2 0.413462 0.607143
53 AGA 0.412371 0.618182
54 GLA GLC 0.409639 0.733333
55 MAN BMA 0.409639 0.733333
56 BMA MAN 0.409639 0.733333
57 MAN MAN 0.409639 0.733333
58 GAL GLC 0.409639 0.733333
59 GLC GLC 0.409639 0.733333
60 MLB 0.409639 0.733333
61 GLA BGC 0.409639 0.733333
62 GAL GAL 0.409639 0.733333
63 BMA GLA 0.409639 0.733333
64 LAK 0.409639 0.733333
65 GLA BMA 0.409639 0.733333
66 BGC GLA 0.409639 0.733333
67 BGC GLC 0.409639 0.733333
68 GLC BGC 0.409639 0.733333
69 T7X 0.409091 0.709091
70 B7G 0.404762 0.888889
71 KGM 0.404762 0.888889
72 GAL SPH NER 0.40367 0.719298
Ligand no: 2; Ligand: PID; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 NEX 0.438017 0.818182
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 37
This union binding pocket(no: 1) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 3KP6 SAL None
2 4WG0 CHD None
3 6CB2 OLC 0.682594
4 1I0B PEL 0.917431
5 5AAV GW5 1.5873
6 4MRP GSH 1.83486
7 1Q7E MET 1.83486
8 4F06 PHB 1.83486
9 5W7B MYR 2.14067
10 3ECN IBM 2.14067
11 3V1S 0LH 2.17391
12 2HFK E4H 2.50784
13 1M5B BN1 2.6616
14 4C1K PEP 2.67176
15 1J78 OLA 2.75229
16 4Y2B EPK 3.0581
17 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 3.06122
18 1XX4 BAM 3.44828
19 1M2Z BOG 3.89105
20 5UGW GSH 4
21 1MID LAP 4.3956
22 4RW3 TDA 4.63576
23 3AI3 SOE 4.94297
24 4O08 PO6 4.98442
25 1M2W MTL 5.19878
26 3RMK BML 5.8104
27 1NU4 MLA 6.18557
28 4XCP PLM 7.05882
29 5LX9 OLB 7.74648
30 1T0S BML 8.13953
31 5BQI 4UL 9.09091
32 5BQI GSH 9.09091
33 3HW5 AMP 13.7931
34 5NM7 GLY 13.9098
35 5Z84 CHD 15.2174
36 5ZCO CHD 15.2174
37 4OGQ 7PH 35.4839
Pocket No.: 2; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 6
This union binding pocket(no: 2) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 1V6A TRE 2.75229
2 1ZED PNP 2.75229
3 5V3Y 5V8 3.4965
4 5NTP 98E 4.20168
5 2EV1 OLA 5.40541
6 2BCG GER 9.48012
Pocket No.: 3; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: 16
This union binding pocket(no: 3) in the query (biounit: 2c9e.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 5Y02 MXN None
2 5Y02 HBX None
3 3KP6 SAL None
4 3WBZ ATP 2.58303
5 4WOE 3S5 3.0581
6 3TDC 0EU 3.0581
7 5UWA 8ND 3.44828
8 1M2Z BOG 3.89105
9 5UGW GSH 4
10 4UCC ZKW 4.29185
11 1NU4 MLA 6.18557
12 2GWH PCI 6.71141
13 5LX9 OLB 7.74648
14 1UUY PPI 10.1796
15 4ZGM 32M 22.5806
16 4OGQ 7PH 35.4839
Pocket No.: 4; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 11
This union binding pocket(no: 4) in the query (biounit: 2c9e.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 4TV1 36M 1.59363
2 5U97 PIT 2.14067
3 4LPG 1MV 2.44648
4 2GJ5 VD3 3.08642
5 2HHP FLC 3.36391
6 4Q0A 4OA 3.64238
7 4O4Z N2O 5.19481
8 5C1M OLC 7.2
9 5LWY OLB 20.5607
10 4V1F BQ1 20.9302
11 2BHW NEX 22.4138
Pocket No.: 5; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: 13
This union binding pocket(no: 5) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 6BMS POV 3.0581
2 2HHP FLC 3.36391
3 5FCB AMP 3.36391
4 4LSJ LSJ 3.87597
5 3SFI 3SF 5.08475
6 1LNX URI 6.17284
7 6CS8 F9Y 6.27063
8 1HBK COA 6.74157
9 3RWP ABQ 7.07396
10 4IA6 EIC 7.64526
11 1T0S BML 8.13953
12 5NM7 GLY 13.9098
13 2D5Z L35 21.9858
Pocket No.: 6; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 6
This union binding pocket(no: 6) in the query (biounit: 2c9e.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
1 3KPE TM3 None
2 3TDC 0EU 3.0581
3 2JC9 ADN 5.19878
4 1TV5 N8E 5.8104
5 1HBK MYR 6.74157
6 4WGF HX2 8.29268
Pocket No.: 7; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 49
This union binding pocket(no: 7) in the query (biounit: 2c9e.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 5Y02 HBX None
3 1RV1 IMZ None
4 5HZ9 5M8 None
5 1UO4 PIH None
6 4MGA 27L 1.56863
7 5OLK DTP 1.83486
8 3HP9 CF1 2.14067
9 1XMY ROL 2.14067
10 1XM4 PIL 2.14067
11 1XMU ROF 2.14067
12 2Z9I GLY ALA THR VAL 2.16049
13 3FS1 ALA ALA LEU ALA ALA LEU LEU ALA ALA 2.6087
14 2AK3 AMP 2.65487
15 5HCN DAO 2.68199
16 6A0S NDP 2.75229
17 3G58 988 2.75229
18 3KAL HGS 2.75229
19 4N6H EJ4 2.75229
20 5AZC PGT 3
21 3KU0 ADE 3.18725
22 2WR1 NAG 3.36391
23 3SQP 3J8 3.36391
24 3B9Z CO2 3.36391
25 1PWB GLC 3.9548
26 2Q8G AZX 3.97554
27 2HZL PYR 3.97554
28 5CX6 CDP 4.25532
29 5OCA 9QZ 4.28135
30 4UCC ZKW 4.29185
31 5CHR 4NC 4.37956
32 5LY1 PPI 4.58716
33 3CHT 4NB 4.58716
34 5M37 9SZ 4.78261
35 2B56 U5P 5.50459
36 1R6N 434 5.6872
37 1XZ3 ICF 6.32184
38 3WYJ H78 6.32411
39 3X01 AMP 6.42202
40 4F4S EFO 6.57895
41 2GWH PCI 6.71141
42 1HBK COA 6.74157
43 5C1M CLR 7.2
44 3E70 GDP 8.25688
45 1BCJ NGA 8.44156
46 2Y69 CHD 10
47 1TUK PGM 14.9254
48 5W97 CHD 15.2174
49 5ZCO PGV 15.2174
Pocket No.: 8; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: 15
This union binding pocket(no: 8) in the query (biounit: 2c9e.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 1JGS SAL None
2 2QES ADE 1.53257
3 5IM3 DTP 1.83486
4 1GJW GLC 2.14067
5 2IRY DGT 2.64026
6 1GEG GLC 3.51562
7 4L80 OXL 3.66972
8 3BPX SAL 4.05405
9 3ISN EDM 4.28135
10 4L9Z OXL 4.58716
11 5UC9 MYR 7.07965
12 3LE7 ADE 7.66284
13 2PSM BAM 10.2564
14 5Z84 PGV 15.2174
15 2DYS PGV 15.2174
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