Receptor
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CLA A:1327;
A:1328;
 Part of Protein;
Part of Protein;
 none;
none;
 submit data
893.489 C55 H72 Mg N4 O5 CCC1=...
DGD A:1332;
A:1336;
 Valid;
Valid;
 none;
none;
 submit data
949.299 C51 H96 O15 CCCCC...
MG A:1337;
 Part of Protein;
 none;
 submit data
24.305 Mg [Mg+2...
PID A:1329;
A:1330;
A:1331;
A:1333;
A:1334;
A:1335;
 Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
none;
none;
 submit data
630.81 C39 H50 O7 CC(=C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2C9E 2.1 Å NON-ENZYME: OTHER PERIDININ-CHLOROPHYLL A PROTEIN, HIGH-SALT FORM AMPHIDINIUM CARTERAE PHOTOSYNTHESIS CAROTENOIDS CHLOROPLAST LIGHT HARVESTING PLIGHT-HARVESTING POLYPEPTIDE MULTIGENE FAMILY TRANSIT PEP
Ref.: X-RAY STRUCTURE OF THE HIGH-SALT FORM OF THE PERIDININ-CHLOROPHYLL A-PROTEIN FROM THE DINOFLAGEL AMPHIDINIUM CARTERAE: MODULATION OF THE SPECTRAL PR OF PIGMENTS BY THE PROTEIN ENVIRONMENT. BIOCHEMISTRY V. 48 4466 2009
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 2C9E - DGD C51 H96 O15 CCCCCCCCCC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: DGD; Similar ligands found: 56
No: Ligand ECFP6 Tc MDL keys Tc
1 DGD 1 1
2 1O2 0.776471 0.934783
3 3TF 0.767442 0.934783
4 1L2 0.709677 0.934783
5 SQD 0.678161 0.68254
6 GGD 0.64 0.978261
7 J7Z 0.62 0.934783
8 PII 0.494624 0.722222
9 TGL 0.493506 0.608696
10 LTC 0.475 0.762712
11 PIF 0.46875 0.709091
12 LHG 0.467391 0.618182
13 PGT 0.467391 0.618182
14 GM3 0.464646 0.763636
15 PIZ 0.464646 0.690909
16 PBS 0.455446 0.75
17 0SH 0.455446 0.75
18 F61 0.455446 0.75
19 AGH 0.455446 0.75
20 FEE 0.455446 0.75
21 52N 0.454545 0.709091
22 IP9 0.454545 0.690909
23 PIO 0.454545 0.709091
24 1EM 0.451219 0.688889
25 L2C 0.451219 0.688889
26 DDR 0.451219 0.688889
27 DGA 0.451219 0.688889
28 FAW 0.451219 0.688889
29 B7N 0.45098 0.709091
30 LBR 0.448276 0.638298
31 PIE 0.446602 0.690909
32 MMA MAN 0.439024 0.73913
33 9R2 0.436782 0.866667
34 PG8 0.43617 0.618182
35 BGC GLC GLC GLC GLC GLC 0.433735 0.733333
36 BGC GLC GLC GLC GLC 0.433735 0.733333
37 D3D 0.425743 0.607143
38 PGW 0.425743 0.607143
39 XNS 0.422222 0.847826
40 DR4 0.422222 0.847826
41 DR9 0.421569 0.607143
42 PGV 0.421569 0.607143
43 03F 0.420561 0.736842
44 DGG 0.419048 0.642857
45 JLS 0.418182 0.736842
46 P6L 0.417476 0.607143
47 BOG 0.416667 0.888889
48 HSJ 0.416667 0.888889
49 BNG 0.416667 0.888889
50 OZ2 0.413462 0.607143
51 AGA 0.412371 0.618182
52 T7X 0.409091 0.709091
53 KGM 0.404762 0.888889
54 B7G 0.404762 0.888889
55 GAL SPH NER 0.40367 0.719298
56 BGC GLC GLC 0.402174 0.733333
Ligand no: 2; Ligand: PID; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 PID 1 1
2 A86 0.46875 0.869565
3 NEX 0.438017 0.818182
Similar Ligands (3D)
Ligand no: 1; Ligand: DGD; Similar ligands found: 0
No: Ligand Similarity coefficient
Ligand no: 2; Ligand: PID; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 2c9e.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 2c9e.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 2c9e.bio1) has 21 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 2C9E; Ligand: DGD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 2c9e.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 2c9e.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 2C9E; Ligand: PID; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 2c9e.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
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