-->
Receptor
PDB id Resolution Class Description Source Keywords
2BYC 1.9 Å NON-ENZYME: OTHER BLRB - A BLUF PROTEIN, DARK STATE STRUCTURE RHODOBACTER SPHAEROIDES SIGNALING PROTEIN PHOTORECEPTOR FLAVIN
Ref.: STRUCTURE OF A BACTERIAL BLUF PHOTORECEPTOR: INSIGH BLUE LIGHT-MEDIATED SIGNAL TRANSDUCTION. PROC.NATL.ACAD.SCI.USA V. 102 12350 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
FMN A:1137;
B:1632;
Valid;
Valid;
none;
none;
submit data
456.344 C17 H21 N4 O9 P Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BYC 1.9 Å NON-ENZYME: OTHER BLRB - A BLUF PROTEIN, DARK STATE STRUCTURE RHODOBACTER SPHAEROIDES SIGNALING PROTEIN PHOTORECEPTOR FLAVIN
Ref.: STRUCTURE OF A BACTERIAL BLUF PHOTORECEPTOR: INSIGH BLUE LIGHT-MEDIATED SIGNAL TRANSDUCTION. PROC.NATL.ACAD.SCI.USA V. 102 12350 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1443 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1205 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1039 families.
1 2BYC - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: FMN; Similar ligands found: 15
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 RS3 0.571429 0.831169
4 FAD 0.543307 0.876543
5 FAS 0.543307 0.876543
6 FAE 0.539062 0.865854
7 LFN 0.475 0.643836
8 C3F 0.473684 0.74359
9 CF4 0.463918 0.734177
10 FAY 0.446043 0.864198
11 FNR 0.444444 0.909091
12 RFL 0.442857 0.845238
13 4LS 0.411215 0.875
14 1VY 0.406593 0.769231
15 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BYC; Ligand: FMN; Similar sites found with APoc: 217
This union binding pocket(no: 1) in the query (biounit: 2byc.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 2PR5 FMN None
2 5NLD LBT None
3 3BPX SAL None
4 3OYW TDG None
5 3LDW ZOL None
6 1ULE GLA GAL NAG None
7 1DB1 VDX None
8 3SAO NKN None
9 6MPT C30 None
10 1Y2F WAI None
11 1SR7 MOF None
12 2EVL GAL SPH EIC None
13 3T2W BTN None
14 3KP6 SAL None
15 2P3C 3TL None
16 4G7A AZM None
17 2P3B 3TL None
18 4Y24 TD2 None
19 4AML GYU None
20 5Y02 MXN None
21 5DG2 GAL GLC None
22 5Y02 HBX None
23 6CAY ERG None
24 4YHQ G10 None
25 4G6I RS3 None
26 2ET1 GLV None
27 1ZEI CRS None
28 1DRJ RIP 1.45985
29 1IYB 5GP 1.45985
30 1JGS SAL 2.18978
31 2BP1 FLC 2.18978
32 4X5S AZM 2.18978
33 5EOB 5QQ 2.18978
34 6CB2 OLC 2.18978
35 1NX4 AKG 2.91971
36 2VHW NAI 2.91971
37 2Q8Z NUP 2.91971
38 1T27 PCW 2.91971
39 2WKQ FMN 3.64964
40 4R38 RBF 3.64964
41 2R5V HHH 3.64964
42 4KWD JF2 3.64964
43 1YHM AHD 3.64964
44 4DXJ 0M9 3.64964
45 2BKL ZAH 3.64964
46 4EES FMN 4.34783
47 4GCZ FMN 4.37956
48 4ORM 2V6 4.37956
49 4ORM ORO 4.37956
50 4ORM FMN 4.37956
51 4OIV XX9 4.37956
52 1H8S AIC 4.37956
53 3M3E GAL A2G NPO 4.37956
54 1T0S BML 4.37956
55 2P1C GG3 4.37956
56 3VRV YSD 4.37956
57 5CXI 5TW 4.37956
58 5DZ2 212 4.37956
59 5HCY 60D 4.37956
60 3OZ2 OZ2 4.37956
61 3ZOK GLY 4.37956
62 3VQ2 LP4 LP5 MYR DAO 4.37956
63 2R0H CTO 4.37956
64 5UR6 8KM 4.37956
65 5ICK FEZ 4.37956
66 6HDT BTN 4.51128
67 5OCA 9QZ 4.7619
68 5GLT BGC GAL NAG GAL 5.10949
69 5X7Q GLC GLC GLC GLC GLC 5.10949
70 5B4B LP5 5.10949
71 5X7Q GLC GLC GLC GLC 5.10949
72 2ZCQ B65 5.10949
73 6ARJ SAH 5.10949
74 1FM9 570 5.10949
75 1UCD U5P 5.10949
76 3ZXR P3S 5.10949
77 3GN8 DEX 5.10949
78 3ZXR IQ1 5.10949
79 6FL8 TIY 5.10949
80 6FL8 ADP 5.10949
81 5E2N V14 5.10949
82 1TT8 PHB 5.10949
83 4POJ 2VP 5.10949
84 3B1M KRC 5.10949
85 5AM1 I5T 5.10949
86 3ANY 2A3 5.10949
87 4E2J MOF 5.10949
88 5EZ1 ICB 5.10949
89 5IM3 DTP 5.10949
90 4URG C2E 5.10949
91 4CQB MLI 5.10949
92 6G5Q EMZ 5.10949
93 4Q9M FPP 5.10949
94 4MRP GSH 5.10949
95 2QL9 CIT 5.15464
96 5LWY OLB 5.83942
97 4Q0A 4OA 5.83942
98 5W7B MYR 5.83942
99 3HP9 CF1 5.83942
100 4TR9 38D 5.83942
101 3UXL CFI 5.83942
102 4WMY 3S6 5.83942
103 3WV6 GAL GLC 5.83942
104 4JZB P2H 5.83942
105 5LGA 6VH 5.83942
106 1DQS NAD 5.83942
107 6GBV FMN 6.56934
108 3P7N FMN 6.56934
109 3D9F N6C 6.56934
110 2OG7 SIN 6.56934
111 5IH9 6BF 6.56934
112 6EOZ 58K 6.56934
113 3D9F FAD 6.56934
114 1M13 HYF 6.56934
115 4A01 2PN 6.56934
116 5EW0 3C7 6.56934
117 4QWT ACD 6.56934
118 2GWH PCI 6.56934
119 6EOZ AKG 6.56934
120 6DIO CIT 6.56934
121 6A63 LAT 7.29927
122 2OVW CBI 7.29927
123 3KDU NKS 7.29927
124 3E2M E2M 7.29927
125 2BHW NEX 7.29927
126 4WUJ FMN 7.29927
127 1K7L 544 7.29927
128 2A4W BLM 7.29927
129 4D1J DGJ 7.29927
130 1MID LAP 7.69231
131 2Z6C FMN 7.75194
132 4N14 WR7 8.0292
133 5C1M OLC 8.0292
134 3WFD AXO 8.0292
135 1VPV PLM 8.0292
136 1MGP PLM 8.0292
137 1Y0G 8PP 8.0292
138 4PTN PYR 8.0292
139 4L4J NAG NAG BMA MAN NAG 8.0292
140 4DDY DN6 8.0292
141 5GUD NDP 8.0292
142 5GUD 2IT 8.0292
143 2Z77 HE7 8.75912
144 4XYB NDP 8.75912
145 1GJW GLC 8.75912
146 5LY2 OGA 8.75912
147 3SCM LGN 8.75912
148 5FWE OGA 8.75912
149 3RUG DB6 8.75912
150 2P5B OGA 8.75912
151 3T58 FAD 8.75912
152 5TVF PUT 9.48905
153 3RWP ABQ 9.48905
154 1AUA BOG 9.48905
155 1UJ2 C5P 9.48905
156 2B7N NTM 9.48905
157 1WUB OTP 10.219
158 2E2R 2OH 10.219
159 4COQ SAN 10.219
160 4RFR RHN 10.219
161 1LVK MNT BEF 10.219
162 2O4J VD4 10.219
163 5H9Q TD2 10.9489
164 4LY9 1YY 10.9489
165 1ZOY UQ1 10.9489
166 4IE6 UN9 10.9489
167 3I8T LBT 11.5854
168 4IA6 EIC 11.6788
169 1VBO MAN MAN MAN 11.6788
170 2OHV NHL 11.6788
171 5NBP BGC BGC BGC 11.6788
172 5FYR INS 11.6788
173 1JT1 MCO 11.6788
174 4D42 NAP 11.6788
175 4D42 W0I 11.6788
176 1VBO MAN 11.6788
177 2JAP NDP 11.6788
178 1PZO CBT 11.7871
179 5ZCO CHD 11.8644
180 4DNJ ANN 12.4088
181 1ZT1 PHE GLU ALA ASN GLY ASN LEU ILE 12.4088
182 4B1L FRU 12.4088
183 2UW1 GVM 12.4088
184 4H07 IPH 12.4088
185 1M2Z BOG 12.4088
186 3T50 FMN 12.5
187 4P3H 25G 13.1387
188 2GTE VA 13.7097
189 6B5G NAD 13.8686
190 6GH1 ARG LEU PRO ALA LYS ALA PRO LEU LEU 13.8686
191 1D5Z ACE ALC ARG ALA ODA SER LEU NH2 13.8686
192 4D06 NAR 14.5985
193 4CVZ TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 14.5985
194 2Z6D FMN 14.6154
195 1QNR MAB 15.3285
196 3TL1 JRO 15.3285
197 3U6W KIV 15.3285
198 2XMY CDK 16.0584
199 3MI3 LYS 16.0584
200 2AX9 BHM 16.0584
201 5AAV GW5 16.7883
202 4MG9 27K 16.7883
203 3BJC WAN 16.7883
204 2AXR ABL 16.7883
205 5DRB 5FJ 18.2482
206 4LIT AKG 18.9781
207 5NM7 GLY 21.1679
208 3WIR BGC 21.1679
209 5O5Y GLC 24.0876
210 6F6D AKG 24.8175
211 1RQH PYR 24.8175
212 2HFN FMN 30.6569
213 1X0P FAD 32.8467
214 4YUS FMN 35.0365
215 5MBC FMN 37.2263
216 1YRX FMN 45.4545
217 2IYG FMN 45.9677
Pocket No.: 2; Query (leader) PDB : 2BYC; Ligand: FMN; Similar sites found with APoc: 67
This union binding pocket(no: 2) in the query (biounit: 2byc.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1UO5 PIH None
2 1SIV PSI None
3 4IAE 1DX None
4 4O4Z N2O None
5 2GJ5 VD3 None
6 4B6C B5U None
7 1POC GEL None
8 4WG0 CHD None
9 4QM9 CYS None
10 1N9L FMN None
11 5A5W GUO 2.18978
12 1ZM1 BGC BGC BGC 2.18978
13 1QY1 PRZ 2.18978
14 5X80 SAL 2.18978
15 2X32 OTP 2.18978
16 2P7Q GG6 2.25564
17 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 2.91971
18 4L1F COS 2.91971
19 3LN0 52B 2.91971
20 4BTB PRO PRO PRO PRO PRO PRO PRO PRO PRO 2.92887
21 2I0G I0G 3.64964
22 4DXJ IPE 3.64964
23 1VHT BA3 3.64964
24 1NYW DAU 3.64964
25 2J1P GRG 3.64964
26 3AI3 SOE 4.37956
27 4CCW VKC 4.37956
28 1Z6K OAA 4.37956
29 1GSA ADP 4.37956
30 4V24 GYR 5.10949
31 3FUR Z12 5.10949
32 4HEE 14R 5.10949
33 4M8E 29V 5.10949
34 2HFP NSI 5.10949
35 1XON PIL 5.83942
36 1DLJ UGA 5.83942
37 2HZL PYR 5.83942
38 3QFJ LEU LEU PHE GLY PHE PRO VAL TYR VAL 5.83942
39 4RC8 STE 5.83942
40 5LX9 OLB 5.83942
41 5JHD GLY ILE LEU GLY PHE VAL PHE THR LEU 5.83942
42 1U0A BGC BGC BGC BGC 6.56934
43 5K52 OCD 6.56934
44 3FEI CTM 7.29927
45 2C6Q NDP 7.29927
46 5UWA 8ND 8.0292
47 4RW3 TDA 8.0292
48 3P3G UKW 8.0292
49 3P3G 3P3 8.0292
50 3B00 16A 8.0292
51 3NB0 G6P 8.0292
52 4X6F 3XU 8.75912
53 2V6K TGG 8.75912
54 5WL1 CUY 10.219
55 5WL1 D3D 10.219
56 2J62 GSZ 10.9489
57 5U98 1KX 10.9489
58 5Z84 CHD 11.8644
59 3PVT 3HC 14.5985
60 4Y3O OGA 14.5985
61 4CCN OGA 15.3285
62 5F1R 42O 19.708
63 3HR1 PF9 20.438
64 5UGW GSH 22.6277
65 5IKH 6BW 23.3577
66 5IXK 6EW 24.0876
67 5IVX ARG GLY PRO GLY ARG ALA PHE VAL THR ILE 25.5474
APoc FAQ
Feedback