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Receptor
PDB id Resolution Class Description Source Keywords
2BMD 1.8 Å EC: 3.6.5.2 HIGH RESOLUTION STRUCTURE OF GDP-BOUND HUMAN RAB4A HOMO SAPIENS GTP-BINDING PROTEIN VESICULAR TRANSPORT ENDOCYTOSIS PRENYLATION PROTEIN TRANSPORT TRANSPORT
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN RAB4A IN ITS ACTIVE AND INACTIVE CONFORMATIONS. FEBS LETT. V. 579 2821 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:1187;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
GOL A:1188;
A:1189;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2BME 1.57 Å EC: 3.6.5.2 HIGH RESOLUTION STRUCTURE OF GPPNHP-BOUND HUMAN RAB4A HOMO SAPIENS GTP-BINDING PROTEIN VESICULAR TRANSPORT ENDOCYTOSIS PRENYLATION PROTEIN TRANSPORT TRANSPORT
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURES OF HUMAN RAB4A IN ITS ACTIVE AND INACTIVE CONFORMATIONS. FEBS LETT. V. 579 2821 2005
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 2A5J - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 1Z0F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
6 1Z0A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (274)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 1Z2A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1Z22 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 1YZT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1YZU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 1Z08 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 1Z0I - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 4DKX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
8 2Y8E - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 2A5J - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 4LHW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 4LHV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 2P2L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
13 2W2V - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
14 1MH1 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 2WKP - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
16 2WKR - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
17 2WKQ - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
18 5WDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
19 3TGP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
20 1P2T - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
21 4Q01 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
22 4M21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
23 6ARK - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
24 821P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
25 1Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
26 5VPZ - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
27 6F76 - CVK C24 H26 N2 O3 CN(C)Cc1cc....
28 6Q21 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
29 4L9W - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
30 4WA7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
31 3V4F - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
32 3K9N - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
33 5OCO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
34 4M1T - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
35 4XVQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
36 5V71 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
37 5VP7 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
38 2QUZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
39 1CLU Kd = 5.4 nM DBG C23 H27 N8 O13 P3 c1ccc(cc1)....
40 4L8G - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
41 5VBM - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
42 2RGD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
43 4PZY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
44 4LPK - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
45 4DLV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
46 4LRW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
47 2CLD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
48 4M1W - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
49 3L8Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
50 3LBH - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
51 721P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
52 1LF5 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
53 1GNR - CAG C18 H23 N6 O16 P3 C[C@H](c1c....
54 4LUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
55 2RGE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
56 4DLS - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
57 4M22 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
58 4DLY - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
59 1ZW6 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
60 2RGC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
61 5VQ1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
62 5V9L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
63 2CL0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
64 4TQA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
65 3RRZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
66 5VPY - 9GM C10 H17 N6 O13 P3 c1nc2c(n1[....
67 2EVW - XY2 C12 H15 N5 O4 CC(=O)N(C)....
68 2RGB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
69 4LDJ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70 1XJ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
71 1ZVQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
72 5VQ6 - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
73 1P2S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
74 5V6V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
75 621P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
76 1P2V - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
77 2CL7 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
78 3OIW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
79 4LV6 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
80 4DLT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
81 1P2U - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
82 5V6S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
83 5UK9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
84 6ASE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
85 3RS0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
86 5B30 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
87 5B2Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
88 3KKN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
89 4M1O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
90 5VQ0 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
91 4M1Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
92 5VPI - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
93 5W22 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
94 3I3S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
95 4OBE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
96 3RRY - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
97 1QRA - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
98 6BP1 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
99 4LYJ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
100 121P - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
101 1RVD - DBG C23 H27 N8 O13 P3 c1ccc(cc1)....
102 5VBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
103 2RGA - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
104 3RS7 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
105 5UHV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
106 2CLC - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
107 4EPT - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
108 4EPY Kd = 340 uM 0QY C21 H21 N5 O c1ccc2c(c1....
109 4DLZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
110 1AGP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
111 1GNQ - CAG C18 H23 N6 O16 P3 C[C@H](c1c....
112 2Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
113 3RS2 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
114 5VQ8 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
115 4L9S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
116 6B0Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
117 4M1S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
118 4EPV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
119 5WDP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
120 4TQ9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
121 3K8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
122 3OIV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
123 5OCT - 9R5 C9 H10 Cl N O2 c1cc2c(cc1....
124 5VBE - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
125 4Q02 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
126 3LBI - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
127 3RSL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
128 1LF0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
129 1XCM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
130 421P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
131 4DLR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
132 2CE2 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
133 4QL3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
134 4Q21 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
135 4DLU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
136 1CTQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
137 3OIU - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
138 6B0V - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
139 3RS5 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
140 4EPW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
141 5WDQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
142 1IOZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
143 221P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
144 4LYH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
145 4DLX - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
146 4Q03 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
147 4PZZ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
148 3KKM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
149 1JAI - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
150 3L8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
151 3RS4 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
152 3LBN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
153 4NMM - Y9Z C14 H22 N6 O12 P2 CC(=O)NCCO....
154 5VQ2 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
155 3RSO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
156 4XVR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
157 5P21 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
158 5F2E - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
159 4EPX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
160 4EPR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
161 4DLW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
162 5WHD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
163 5V9O - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
164 5V9U - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
165 2RGG - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
166 4LYF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
167 1JAH - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
168 1YU9 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
169 2BME - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
170 2BMD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
171 1YZN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
172 3RWM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
173 3RWO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
174 3REG - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
175 2F9L - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
176 2F9M - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
177 1YZK - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
178 1OIV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
179 2FE4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
180 2FFQ - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
181 2E9S - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
182 5US4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
183 5UQW - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
184 5USJ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
185 3NKV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
186 1HUQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
187 1Z07 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
188 1N6R - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
189 1Z0D - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
190 1N6H - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
191 1N6P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
192 1N6K - GDP AF3 n/a n/a
193 1N6N - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
194 1N6I - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
195 1R2Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
196 1N6L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
197 1N6O - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
198 1TU4 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
199 1EK0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
200 1S8F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
201 1YZL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
202 1WMS - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
203 1D5C - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
204 1Z0F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
205 3E5H - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
206 4DSU - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
207 4DST - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
208 4DSO - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
209 4DSN - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
210 5OCG - 9R5 C9 H10 Cl N O2 c1cc2c(cc1....
211 1KAO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
212 3RAP - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
213 1YZQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
214 2GIL - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
215 1Z0A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
216 1KY2 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
217 1KY3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
218 2HT6 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
219 3KKO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
220 3KKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
221 3KKP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
222 1X1R - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
223 1X1S - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
224 1T91 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
225 1VG8 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
226 2GCP - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
227 2GCN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
228 3X1Z - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
229 3X1Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
230 3X1W - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
231 3X1X - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
232 4Z8Y - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
233 1G17 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
234 1G16 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
235 1M7B - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
236 2DPX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
237 3Q7Q - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
238 3Q7P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
239 3Q72 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
240 1U8Z - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
241 1U90 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
242 1U8Y - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
243 1YVD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
244 5WDR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
245 5WDS - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
246 1Z06 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
247 3TH5 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
248 3SBD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
249 1OIX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
250 1OIW - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
251 2QRZ - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
252 1A4R Kd = 9.4 pM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
253 1KMQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
254 1DPF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
255 1FTN - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
256 5A0F - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
257 1A2B - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
258 4U5X - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
259 3Q85 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
260 1RYH - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
261 1RYF - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
262 1VG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
263 5XC5 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
264 5XC3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
265 3RAB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
266 1GWN - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
267 2EW1 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
268 4O25 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
269 4O2R - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
270 4O2L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
271 6BSX - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
272 5YXH - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
273 1XTQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
274 3SEA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found with APoc: 559
This union binding pocket(no: 1) in the query (biounit: 2bme.bio3) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 3PQC GDP None
2 3DKP ADP None
3 1GXU 2HP None
4 4A6F SEP None
5 2BEK ATP None
6 1LOJ URI None
7 5URY PAM None
8 1W5T ADP None
9 3IIJ ADP None
10 5ZB0 TYD None
11 5ZB0 ADP None
12 3W68 4PT None
13 1KO8 6PG None
14 4GBM A3P None
15 1W5T ANP None
16 4JLS 3ZE None
17 1LOJ U None
18 4KFU ACP 1.07527
19 1DAK DPU 1.07527
20 1DAK ADP 1.07527
21 5H4S RAM 1.07527
22 4E03 ADP 1.6129
23 3BOS CDP 1.6129
24 1FP6 ADP 1.6129
25 1GOJ ADP 1.6129
26 1G8S MET 1.6129
27 2ZX2 RAM 1.6129
28 4ZNL BEF ADP 1.6129
29 2CDN ADP 2.15054
30 1IWE IMP 2.15054
31 4DDY DN6 2.15054
32 3FWY ADP 2.15054
33 5K5Z ANP 2.15054
34 4MKF AP5 2.15054
35 3UIE ANP 2.15054
36 3ITJ CIT 2.15054
37 5DT6 GLU 2.15054
38 1R6B ADP 2.15054
39 1NN5 ANP 2.15054
40 1NN5 2DT 2.15054
41 2XWL CTP 2.15054
42 3QVV A3P 2.15054
43 1BO4 COA 2.38095
44 4WOP CTP 2.66667
45 5ZBR ANP 2.68817
46 2DPY ADP 2.68817
47 1H65 GDP 2.68817
48 4IEE AGS 2.68817
49 4Y4V DAL 2.68817
50 4OHY ANP 2.68817
51 5AOG IAC 2.68817
52 1P72 ADP 2.68817
53 3H86 AP5 2.68817
54 6A20 ADP 2.68817
55 2Z5F A3P 2.68817
56 3BFV ADP 2.68817
57 5I34 GDP 2.68817
58 1O8B ABF 2.68817
59 1CR1 TTP 2.68817
60 4TQK NAG 2.68817
61 3TMK T5A 2.68817
62 2QG6 NMN 2.68817
63 4ZU4 4TG 2.7027
64 2PEZ DAT 2.7933
65 2PEZ GGZ 2.7933
66 2GJ8 ALF GDP 2.90698
67 2VWA PTY 2.9703
68 4WZ6 ATP 3.22581
69 5TSH ADP 3.22581
70 5TSH ANP 3.22581
71 5M04 GDP 3.22581
72 3ZFD ANP 3.22581
73 2PL3 ADP 3.22581
74 3TBK ANP 3.22581
75 1FNN ADP 3.22581
76 6B4K ANP 3.22581
77 1LVK MNT BEF 3.22581
78 2VB6 ADP BEF 3.22581
79 2Q2Y ADP 3.22581
80 2Q2Y MKR 3.22581
81 5WC2 ADP 3.22581
82 3FKQ ATP 3.22581
83 3Q9L ATP 3.22581
84 4PFO ADP 3.22581
85 1F9V ADP 3.22581
86 3BER AMP 3.22581
87 1ZIN AP5 3.22581
88 2VVG ADP 3.22581
89 2XCU C5P 3.22581
90 2P3V SRT 3.22581
91 2O66 FLC 3.7037
92 1V8K ANP 3.76344
93 1JJV ATP 3.76344
94 4HI0 GDP 3.76344
95 4IHQ ADP 3.76344
96 4XGU ADP 3.76344
97 3KJI ADP 3.76344
98 5BQ5 ADP BEF 3.76344
99 2FSH ANP 3.76344
100 3DC4 ADP 3.76344
101 1OYY AGS 3.76344
102 1IHU ADP 3.76344
103 2OFW ADX 3.76344
104 1IHU AF3 3.76344
105 4O48 ASP 3.76344
106 4NU0 AP5 3.76344
107 5MEX PAP 3.76344
108 2OZE AGS 3.76344
109 2QZ4 ADP 3.76344
110 2QEN ADP 3.76344
111 2KIN ADP 3.76344
112 2O0J ADP 3.76344
113 1GPJ CIT 3.76344
114 1QF9 ALF 3.76344
115 1QF9 ADP 3.76344
116 1QF9 C5P 3.76344
117 1HTW ADP 3.79747
118 3P4X ADP 3.87409
119 3GUZ PAF 3.97727
120 2XT3 ADP 4.30108
121 1YQT ADP 4.30108
122 5YV5 ADP 4.30108
123 1JI0 ATP 4.30108
124 5XKT GNP 4.30108
125 5LB3 ADP 4.30108
126 2GK6 ADP 4.30108
127 3ZQ6 ADP ALF 4.30108
128 3ZS9 ADP ALF 4.30108
129 2CHG ANP 4.30108
130 2WOJ ADP ALF 4.30108
131 1VHT BA3 4.30108
132 5L3W GDP 4.30108
133 4XVU ATP 4.30108
134 4XTR ATP 4.30108
135 5N69 ADP 4.30108
136 4A4Z ANP 4.30108
137 4XTR ADP 4.30108
138 4PU6 ASP 4.30108
139 5H68 AGS 4.30108
140 4V03 ADP 4.30108
141 2J5V PCA 4.30108
142 1AQU A3P 4.30108
143 5G3Y ADP 4.30108
144 5VGR GDP 4.30108
145 1G41 ADP 4.30108
146 5ZXD ATP 4.30108
147 6FMC DUE 4.43038
148 1SQL GUN 4.79452
149 4RD0 GDP 4.83871
150 2W58 ADP 4.83871
151 1LVG ADP 4.83871
152 5U32 GDP 4.83871
153 2QN6 GDP 4.83871
154 3MD0 GDP 4.83871
155 1Z6T ADP 4.83871
156 5J1J ANP 4.83871
157 1X6V ADP 4.83871
158 1G3Q ADP 4.83871
159 3H4S ADP 4.83871
160 1ION ADP 4.83871
161 4PVR ASP 4.83871
162 1P9B GDP 4.83871
163 4FRZ ADP 4.83871
164 5E5U MLI 4.83871
165 4GOX A3P 4.83871
166 4D81 ADP 4.83871
167 3FYH ADP 4.83871
168 5X40 ACP 4.83871
169 4QOS ADP 4.83871
170 2ZTS ADP 4.83871
171 2GDJ ANP 4.83871
172 1UKZ ADP 4.83871
173 1EXF GLY 4.83871
174 3IX9 MTX 4.83871
175 3KTA AP5 4.94506
176 1XEX ATP 4.94506
177 4KBF AMP 5.20548
178 2RCN GDP 5.37634
179 3B5J 12D 5.37634
180 2OG2 MLI 5.37634
181 5GOE GDP 5.37634
182 3B9Q MLI 5.37634
183 1XMV ADP 5.37634
184 3B7G ANP 5.37634
185 5Y6N ADP 5.37634
186 1QF5 RPL 5.37634
187 1QF5 GDP 5.37634
188 4WEI GLC GAL 5.37634
189 5H67 ATP 5.37634
190 3RC3 ANP 5.37634
191 5EXT ADP 5.37634
192 1AKY AP5 5.37634
193 5WRI A3P 5.37634
194 5NM7 GLY 5.37634
195 3FVQ ATP 5.37634
196 3LRE ADP 5.37634
197 5WRJ A3P 5.37634
198 1LK7 DER 5.37634
199 4BFW ZVW 5.37634
200 1NY5 ADP 5.37634
201 1V6A TRE 5.37634
202 4BQS ADP 5.68182
203 4BQS K2Q 5.68182
204 1YRB GDP 5.91398
205 3U6B GDP 5.91398
206 2BVN GNP 5.91398
207 5H7J GCP 5.91398
208 1G7C 5GP 5.91398
209 4PC3 GDP 5.91398
210 4PPF FLC 5.91398
211 3NHB ADP 5.91398
212 4B47 GDP 5.91398
213 5JBQ GDP 5.91398
214 1D8T GDP 5.91398
215 4G5G GDP 5.91398
216 1G6O ADP 5.91398
217 3U6K GDP 5.91398
218 2WIC GNP 5.91398
219 2WJG GDP 5.91398
220 5UIV ADP 5.91398
221 1XX6 ADP 5.91398
222 4P4T GDP 5.91398
223 4R98 GNH 5.91398
224 1NJF ADP 5.91398
225 2BIF ANP 5.91398
226 2BIF SIN 5.91398
227 3VM7 GLC 5.91398
228 1S3G AP5 5.91398
229 4MKG AP5 5.91398
230 3FB4 AP5 5.91398
231 1YTM ATP 5.91398
232 1NJF AGS 5.91398
233 3QKT ANP 5.91398
234 5G41 AP5 5.91398
235 2X7I CIT 5.91398
236 5VHC BEF ADP 5.91398
237 4YDS ATP 5.91398
238 4QRH 0O2 5.91398
239 1BG2 ADP 5.91398
240 3R7F CP 5.91398
241 4IOK ADP 5.91398
242 4IOK XPO 5.91398
243 1Z83 AP5 5.91398
244 1IN4 ADP 5.91398
245 1OXV ANP 5.91398
246 1ZUI SKM 5.95238
247 2QQ0 ANP 5.97826
248 2QQ0 ADP 5.97826
249 2QQ0 TMP 5.97826
250 2QQ0 THM 5.97826
251 1OFH ADP 6.32184
252 2VOH CIT 6.36943
253 2C78 GNP 6.45161
254 3EC1 GDP 6.45161
255 2C77 GNP 6.45161
256 1G6H ADP 6.45161
257 1RRC ADP 6.45161
258 1TQ4 GDP 6.45161
259 2ZPA ADP 6.45161
260 5AK0 8V1 6.45161
261 3QF7 ANP 6.45161
262 3IUY AMP 6.45161
263 2Z9I GLY ALA THR VAL 6.45161
264 1E2K TMC 6.45161
265 1QHG ATP 6.45161
266 4TL6 ANP 6.45161
267 2ZWS PLM 6.45161
268 4YMU ATP 6.45161
269 4NE2 SH2 6.45161
270 4NE2 ADP 6.45161
271 2XAU ADP 6.45161
272 4OWK NGA 6.52174
273 2WJH GDP 6.62651
274 2WJH FLC 6.62651
275 4DCT GDP 6.98925
276 2AWN ADP 6.98925
277 4U00 ADP 6.98925
278 2B8W ALF 5GP 6.98925
279 2D2F ADP 6.98925
280 1F5N GNP 6.98925
281 1XP8 AGS 6.98925
282 4R43 GDP 6.98925
283 4H1V GNP 6.98925
284 4R2I ANP 6.98925
285 4YJ1 ADP 6.98925
286 4PJ3 ANP 6.98925
287 3DZD ADP 6.98925
288 2RGX AP5 6.98925
289 1K6M AGS 6.98925
290 2JLR ANP 6.98925
291 2GWH A3P 6.98925
292 3RLF ANP 6.98925
293 2IS6 ADP 6.98925
294 3FJG 3PG 6.98925
295 5TQZ GLC 7.33333
296 4ZKD GDP 7.52688
297 2XTZ GSP 7.52688
298 3COB ADP 7.52688
299 5H7K GDP 7.52688
300 5IRR GSP 7.52688
301 1MKY GDP 7.52688
302 5GVR LMR 7.52688
303 4LC1 GDP 7.52688
304 2XTN GTP 7.52688
305 2FAH GDP 7.52688
306 3VX3 ADP 7.52688
307 4X8O AP5 7.52688
308 6CS8 F9Y 7.52688
309 2NCD ADP 7.52688
310 1L2T ATP 7.52688
311 4CS9 AMP 7.52688
312 2ZR9 DTP 7.52688
313 1NRJ GTP 7.59494
314 4P3Y GDP 7.69231
315 5I0H ADP BEF 8.06452
316 5BN3 ADP 8.06452
317 3EZ2 ADP 8.06452
318 3A1S GDP 8.06452
319 5L3V GDP 8.06452
320 6C90 ADP 8.06452
321 4LYA ATP 8.06452
322 3AB4 THR 8.06452
323 6B8B ADP 8.06452
324 3QXC ATP 8.06452
325 6AYU F6P 8.06452
326 4X9D U5P 8.4507
327 1WDT GTP 8.60215
328 6DEF GCP 8.60215
329 2OBM ADP 8.60215
330 5LTJ BEF 8.60215
331 3KC1 2T6 8.60215
332 4ZDJ UTP 8.60215
333 1NST A3P 8.60215
334 5LTJ ADP 8.60215
335 4TTQ ATP 8.60215
336 1V3S ATP 8.62069
337 1Y63 ADP 8.69565
338 2PZE ATP 9.13978
339 4AG5 ADP 9.13978
340 2WHX ADP 9.13978
341 1G7S GDP 9.13978
342 2CE7 ADP 9.13978
343 4IDN GNP 9.13978
344 3UG4 AHR 9.13978
345 1OS1 PYR 9.13978
346 5HR5 ADP 9.13978
347 2I4I AMP 9.13978
348 1OS1 ATP 9.13978
349 5XDR ADP 9.13978
350 5MVR ADP 9.25926
351 4QM7 GTP 9.35672
352 5CK5 GDP 9.67742
353 3WXM GTP 9.67742
354 1FQJ ALF 9.67742
355 1FQJ GDP 9.67742
356 1FQK GDP 9.67742
357 1GOT GDP 9.67742
358 1R0X ATP 9.67742
359 5IFS ADP 9.67742
360 1U0J ADP 9.67742
361 1FQK ALF 9.67742
362 3HU3 AGS 9.67742
363 5M7P ADP 9.67742
364 6FAA ADP 9.67742
365 1F2U ATP 10.1351
366 2CBZ ATP 10.2151
367 2HF9 GSP 10.2151
368 1DAR GDP 10.2151
369 4LPS GDP 10.2151
370 5MZN ADP 10.2151
371 5LA1 XYP 10.2151
372 3MWL 8OX 10.2151
373 1DCP HBI 10.5769
374 3VMF GTP 10.7527
375 1RJ9 GCP 10.7527
376 3TK1 GDP 10.7527
377 5Z69 AGS 10.7527
378 2IYL GDP 10.7527
379 5IRN ADP 10.7527
380 5FHD ADP ALF 10.7527
381 5FTB ANP 10.7527
382 1SVM ATP 10.7527
383 1M0S CIT 10.7527
384 4J6W CTP 10.9756
385 5KUT GDP 11.2903
386 4JLV ADP 11.2903
387 2D7D ADP 11.2903
388 1Q19 SSC 11.2903
389 6AIC AMP 11.2903
390 2FNA ADP 11.2903
391 1D2N ANP 11.2903
392 3OBT SLB 11.2903
393 5L3R GCP 11.828
394 1W0J ADP 11.828
395 2V7Q ATP 11.828
396 2CK3 ANP 11.828
397 2CK3 ADP 11.828
398 1W0J ADP BEF 11.828
399 2V7Q ADP 11.828
400 4OI4 ATP 12.1739
401 5W7Q GDP 12.3324
402 2Y65 ADP 12.3656
403 1M7G AV2 12.3656
404 4HSE ADP 12.3656
405 1M7G ADP 12.3656
406 1M7G ADX 12.3656
407 5L3S GNP 12.5
408 5L3S G 12.5
409 5W76 GDP 12.7273
410 5FII PHE 12.7451
411 5W75 GDP 12.9032
412 1XKV ATP 12.9032
413 4RZ3 ADP 12.9032
414 3IO3 ADP 12.9032
415 2IXE ATP 12.9032
416 1APZ ASP 13.4409
417 2ZFI ADP 13.4409
418 4YS0 ADP 13.4409
419 3EWA ANP 13.4409
420 4PX9 ADP 13.4409
421 1SQ5 ADP 13.4409
422 4Z7X 3CX 13.9785
423 2ODE ALF GDP 14.5161
424 6G14 G4P 14.5161
425 1JJ7 ADP 14.5161
426 3E70 GDP 15.0538
427 1PUJ GNP 15.0538
428 1MLY ACZ PLP 15.0538
429 4CVN ADP 15.3285
430 2GKS ADP 15.5914
431 1SKQ GDP 16.129
432 4KVA GTP 16.129
433 2YOH WMJ 16.129
434 3ZIA ADP 16.3934
435 3ZIA ATP 16.3934
436 1BH2 GSP 16.6667
437 1W7J ADP BEF 16.6667
438 1T5C ADP 16.6667
439 3WY9 GDP 17.7419
440 3WYA GDP 17.7419
441 4ZG4 VO4 ADP 17.7419
442 3CNL GNP 17.7419
443 4WZA ACP 17.7419
444 4WZA ADP 17.7419
445 3BFX A3P 17.7419
446 1B7T ADP 18.5897
447 5HCN GCP 18.8172
448 1UJ2 ADP 18.8172
449 1UJ2 C5P 18.8172
450 2HCJ GDP 18.9189
451 1CS4 GSP 19.3548
452 6AU6 GDP 19.3548
453 2C9O ADP 19.8925
454 3CX8 GSP 20.4301
455 1ZCB GDP 20.4301
456 3AB3 GDP 20.4301
457 2ZJ5 ADP 20.4301
458 1QHH ATP 20.4301
459 1UPT GTP 20.4678
460 2X77 GDP 20.6349
461 1KK8 BEF ADP 20.8633
462 3T34 GDP 20.9677
463 1VKJ A3P 23.1183
464 1WF3 GNP 23.6559
465 3A4M ADP 23.6559
466 1D2E GDP 24.1935
467 1SVI GDP 24.1935
468 1B0U ATP 24.7312
469 1M2O GNP 25.2688
470 4FCW ADP 25.2688
471 1KK1 GNP 25.8065
472 1SVK ALF GDP 25.8065
473 1Y3A GDP 25.8065
474 1GP2 GDP 25.8065
475 2OM2 GDP 25.8065
476 6CRK GDP 25.8065
477 5KDO GDP 25.8065
478 4LJ9 ACP 26.3441
479 4NCN GTP 26.8817
480 5YT0 GDP 26.8817
481 1F6B GDP 27.4194
482 5J1S ATP 27.6423
483 4NON GDP 27.957
484 5FG3 GDP 27.957
485 2QTV GNP 28.1437
486 4Q1A UDP 28.4946
487 4Q1A 2XZ 28.4946
488 4YLG GDP 29.4798
489 4TMZ GSP 29.5699
490 1TAD ALF 30.6452
491 1TAD GDP 30.6452
492 5DI3 GNP 31.1828
493 5KSP GDP 31.1828
494 5KSZ GCP 31.1828
495 2A5F GTP 31.4286
496 4KAX GTP 31.9527
497 2J59 GTP 32.5301
498 1J2J GTP 32.5301
499 1O3Y GTP 32.5301
500 3AQ4 GDP 32.6087
501 3PCR GTP 32.716
502 2W83 GTP 32.7273
503 2FH5 GTP 32.7957
504 1RE0 GDP 33.5366
505 1S9D GDP 33.5366
506 3N5C GDP 33.9506
507 2ZEJ GDP 34.2391
508 3W5J GDP 34.9462
509 4J0Q GDP 36.5591
510 4ZI2 GNP 38.172
511 3REF GDP 38.172
512 5EE5 GTP 38.5965
513 1MR3 G3D 38.674
514 1KSH GDP 38.7097
515 1ZJ6 G3D 38.7097
516 4GOJ GNP 39.1534
517 1ZD9 GDP 39.3617
518 1YZG GDP 39.6648
519 5UPK GNP 40
520 1R4A GNP 40
521 1FZQ GDP 40.884
522 4V0K GDP 41.4201
523 4YC7 GNP 41.4365
524 5JCP GDP ALF 43.0108
525 1E96 GTP 43.0108
526 1OW3 GDP 43.0108
527 5HPY GDP 43.2432
528 1I4D GDP 43.5484
529 2GCO GNP 43.5484
530 1NF3 GNP 43.5484
531 3DOE GTP 43.5484
532 1DS6 GDP 43.5484
533 4DID GDP 43.5484
534 5IRC GDP 43.5484
535 6BCB GSP 43.7838
536 6BCA GSP 43.7838
537 6BC0 GSP 43.7838
538 2W2X GSP 43.7838
539 3LXR GDP 43.7838
540 4XOI GTP 43.8889
541 1GRN GDP 44.086
542 1GRN AF3 44.086
543 4ITR GDP 44.086
544 2WMO GTP 44.086
545 2NGR GDP 44.086
546 2NGR AF3 44.086
547 1CXZ GSP 44.5055
548 1G4U AF3 44.5652
549 1G4U GDP 44.5652
550 4XSH GSP 44.6927
551 1TX4 ALF GDP 45.1977
552 1HE1 GDP 45.4545
553 1HE1 AF3 45.4545
554 2FJU GSP 46.0674
555 2CJW GDP 46.2366
556 5TB5 GDP 48.6486
557 5TAR GDP 48.6486
558 3WYG GTP 49.4506
559 2J0V GDP 49.4624
Pocket No.: 2; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found with APoc: 31
This union binding pocket(no: 2) in the query (biounit: 2bme.bio4) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 3NJQ NJQ None
2 5TIV A3P None
3 1IK4 PGH None
4 1ONI BEZ None
5 3T5M AMP 2.68817
6 2F5X ASP 2.68817
7 4LHD GLY 3.22581
8 1T8U UAP SGN IDS SGN 3.22581
9 1W4R TTP 3.22581
10 1Q8S MAN MMA 3.22581
11 1UKG MMA 3.22581
12 2POC BG6 3.76344
13 3LA3 2FT 4.30108
14 1K4M CIT 4.83871
15 3QXQ CE5 4.83871
16 3L6C MLI 4.83871
17 1NHX FTB 5.91398
18 1NHX PEP 5.91398
19 2GMV UN8 5.91398
20 3B8I OXL 6.45161
21 2HXW FLC 6.98925
22 4DD8 BAT 7.52688
23 1C0I BE2 8.60215
24 1C0I FAD 8.60215
25 1VMK GUN 9.13978
26 4TVD BGC 9.13978
27 3VPB GLU 10.2151
28 1IXI 2HP 11.2903
29 5C9P FUC 11.2903
30 1P4V GLY 12.9032
31 3BD9 A3P 13.4409
Pocket No.: 3; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found with APoc: 12
This union binding pocket(no: 3) in the query (biounit: 2bme.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 1I0B PEL 1.6129
2 5WQP NCA 1.6129
3 4XFM THE 3.76344
4 2PKA BEN 3.94737
5 1GET NAP 5.91398
6 1GET FAD 5.91398
7 1P6O HPY 6.21118
8 2PMP C5P 6.25
9 2RI1 GLP 10.7527
10 3ENV ABF 11.2903
11 4OGQ 7PH 14.5161
12 2YPI PGA 17.2043
Pocket No.: 4; Query (leader) PDB : 2BME; Ligand: GNP; Similar sites found with APoc: 13
This union binding pocket(no: 4) in the query (biounit: 2bme.bio1) has 25 residues
No: Leader PDB Ligand Sequence Similarity
1 1WMA NDP 2.15054
2 1WMA AB3 2.15054
3 1DNP MHF 3.22581
4 3EYY MLI 3.44828
5 4QEK GLC 4.83871
6 1OAA OAA 4.83871
7 4GNC ASO 5.37634
8 3CV2 OXL 6.45161
9 2ORV 4TA 6.98925
10 4UXH T5A 7.06522
11 2VWT PYR 12.3656
12 5W75 SUC 12.9032
13 3TD3 GLY 15.4472
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