Receptor
PDB id Resolution Class Description Source Keywords
2B3B 1.95 Å NON-ENZYME: BINDING THERMUS THERMOPHILUS GLUCOSE/GALACTOSE BINDING PROTEIN WITH BOUND GLUCOSE THERMUS THERMOPHILUS HB27 PROTEIN-CARBOHYDRATE COMPLEX GLUCOSE GALACTOSE PERIPLASMIC BINDING PROTEIN SUGAR BINDING PROTEIN
Ref.: THE CRYSTAL STRUCTURE OF A THERMOPHILIC GLUCOSE BINDING PROTEIN REVEALS ADAPTATIONS THAT INTERCONVERT MONO AND DI-SACCHARIDE BINDING SITES. J.MOL.BIOL. V. 362 259 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BGC C:2607;
D:2608;
Valid;
Valid;
none;
none;
Kd = 0.08 uM
180.156 C6 H12 O6 C([C@...
GLC A:2605;
B:2606;
E:2609;
F:2610;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
Kd = 0.08 uM
180.156 C6 H12 O6 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2B3B 1.95 Å NON-ENZYME: BINDING THERMUS THERMOPHILUS GLUCOSE/GALACTOSE BINDING PROTEIN WITH BOUND GLUCOSE THERMUS THERMOPHILUS HB27 PROTEIN-CARBOHYDRATE COMPLEX GLUCOSE GALACTOSE PERIPLASMIC BINDING PROTEIN SUGAR BINDING PROTEIN
Ref.: THE CRYSTAL STRUCTURE OF A THERMOPHILIC GLUCOSE BINDING PROTEIN REVEALS ADAPTATIONS THAT INTERCONVERT MONO AND DI-SACCHARIDE BINDING SITES. J.MOL.BIOL. V. 362 259 2006
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 2B3B Kd = 0.08 uM BGC C6 H12 O6 C([C@@H]1[....
2 2B3F Kd = 0.94 uM GAL C6 H12 O6 C([C@@H]1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 2B3B Kd = 0.08 uM BGC C6 H12 O6 C([C@@H]1[....
2 2B3F Kd = 0.94 uM GAL C6 H12 O6 C([C@@H]1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 272 families.
1 2B3B Kd = 0.08 uM BGC C6 H12 O6 C([C@@H]1[....
2 2B3F Kd = 0.94 uM GAL C6 H12 O6 C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BGC; Similar ligands found: 141
No: Ligand ECFP6 Tc MDL keys Tc
1 GAL 1 1
2 BMA 1 1
3 GXL 1 1
4 GLA 1 1
5 ALL 1 1
6 GLC 1 1
7 BGC 1 1
8 GIV 1 1
9 MAN 1 1
10 WOO 1 1
11 32O 0.653846 0.866667
12 RIB 0.653846 0.866667
13 FUB 0.653846 0.866667
14 Z6J 0.653846 0.866667
15 AHR 0.653846 0.866667
16 BMA BMA MAN 0.545455 0.823529
17 GLA BGC 0.511628 0.848485
18 LAK 0.511628 0.848485
19 BGC GLA 0.511628 0.848485
20 GLA BMA 0.511628 0.848485
21 MAN BMA 0.511628 0.848485
22 GLA GLC 0.511628 0.848485
23 GAL GAL 0.511628 0.848485
24 MLB 0.511628 0.848485
25 BMA GLA 0.511628 0.848485
26 BMA BMA BMA BMA BMA BMA MAN 0.5 0.823529
27 YDR 0.5 0.8
28 MAN BMA BMA BMA BMA BMA 0.5 0.823529
29 GLC GLC GLC GLC BGC 0.488889 0.848485
30 GLC GLC GLC 0.488889 0.848485
31 MAN MAN MAN 0.488889 0.848485
32 GLC GLC GLC GLC GLC BGC 0.488889 0.848485
33 BGP 0.461538 0.675
34 G6P 0.461538 0.675
35 M6P 0.461538 0.675
36 A6P 0.461538 0.675
37 M6D 0.461538 0.675
38 BG6 0.461538 0.675
39 SHG 0.457143 0.875
40 GAF 0.457143 0.875
41 G2F 0.457143 0.875
42 X6X 0.457143 0.777778
43 2FG 0.457143 0.875
44 G3F 0.457143 0.875
45 PA1 0.457143 0.777778
46 1GN 0.457143 0.777778
47 GCS 0.457143 0.777778
48 2H5 0.457143 0.875
49 LB2 0.454545 0.848485
50 BGC BMA 0.454545 0.848485
51 BGC GAL 0.454545 0.848485
52 MAL 0.454545 0.848485
53 GLC GAL 0.454545 0.848485
54 M3M 0.454545 0.848485
55 GLA GAL 0.454545 0.848485
56 MAB 0.454545 0.848485
57 GLC BGC 0.454545 0.848485
58 BMA BMA 0.454545 0.848485
59 LBT 0.454545 0.848485
60 MAL MAL 0.454545 0.823529
61 CBK 0.454545 0.848485
62 GLA GLA 0.454545 0.848485
63 MAN GLC 0.454545 0.848485
64 CBI 0.454545 0.848485
65 N9S 0.454545 0.848485
66 GAL GLC 0.454545 0.848485
67 BMA GAL 0.454545 0.848485
68 B2G 0.454545 0.848485
69 BGC GLC 0.454545 0.848485
70 LAT 0.454545 0.848485
71 GAL BGC 0.454545 0.848485
72 3MG 0.444444 0.875
73 TCB 0.444444 0.8
74 GLC SGC 0.444444 0.8
75 YIO 0.441176 0.870968
76 2GS 0.432432 0.875
77 BGC BGC 0.431818 0.848485
78 2M4 0.431818 0.848485
79 MAN MAN 0.431818 0.848485
80 AHR AHR 0.428571 0.764706
81 GLF 0.428571 0.84375
82 FUB AHR 0.428571 0.764706
83 CT3 0.416667 0.848485
84 GLC BGC GLC 0.416667 0.848485
85 MLR 0.416667 0.848485
86 GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
87 GLC GLC GLC GLC GLC 0.416667 0.848485
88 GAL FUC 0.416667 0.848485
89 BMA BMA BMA 0.416667 0.848485
90 CTR 0.416667 0.848485
91 BGC GLC GLC 0.416667 0.848485
92 BGC GLC GLC GLC GLC 0.416667 0.848485
93 MAN MAN BMA BMA BMA BMA 0.416667 0.848485
94 GLC GAL GAL 0.416667 0.848485
95 B4G 0.416667 0.848485
96 CEX 0.416667 0.848485
97 MAN BMA BMA BMA BMA 0.416667 0.848485
98 BMA BMA BMA BMA BMA 0.416667 0.848485
99 GLC BGC BGC BGC BGC BGC 0.416667 0.848485
100 CTT 0.416667 0.848485
101 GLC GLC BGC 0.416667 0.848485
102 DXI 0.416667 0.848485
103 GLC GLC BGC GLC GLC GLC GLC 0.416667 0.848485
104 BGC GLC GLC GLC 0.416667 0.848485
105 BGC BGC BGC GLC 0.416667 0.848485
106 BGC BGC BGC BGC BGC BGC 0.416667 0.848485
107 BMA BMA BMA BMA BMA BMA 0.416667 0.848485
108 MTT 0.416667 0.848485
109 BMA MAN BMA 0.416667 0.848485
110 BGC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
111 CE5 0.416667 0.848485
112 GAL GAL GAL 0.416667 0.848485
113 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.416667 0.848485
114 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
115 GLA GAL GLC 0.416667 0.848485
116 CE6 0.416667 0.848485
117 GLC BGC BGC BGC BGC 0.416667 0.848485
118 GLC BGC BGC 0.416667 0.848485
119 MAN BMA BMA 0.416667 0.848485
120 MT7 0.416667 0.848485
121 GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
122 CE8 0.416667 0.848485
123 CEY 0.416667 0.848485
124 BGC BGC BGC 0.408163 0.848485
125 BGC BGC BGC BGC BGC 0.408163 0.848485
126 GLC BGC BGC BGC BGC BGC BGC 0.408163 0.848485
127 SGC SGC BGC 0.408163 0.8
128 GLC BGC BGC BGC 0.408163 0.848485
129 BGC BGC BGC ASO BGC BGC ASO 0.408163 0.848485
130 BGC BGC BGC GLC BGC BGC 0.408163 0.848485
131 TRE 0.405405 0.848485
132 1LL 0.405405 0.771429
133 TDG 0.405405 0.771429
134 BM3 0.404762 0.7
135 NDG 0.404762 0.7
136 NAG 0.404762 0.7
137 HSQ 0.404762 0.7
138 A2G 0.404762 0.7
139 NGA 0.404762 0.7
140 FUB AHR AHR 0.4 0.764706
141 AHR AHR AHR 0.4 0.764706
Ligand no: 2; Ligand: GLC; Similar ligands found: 141
No: Ligand ECFP6 Tc MDL keys Tc
1 GAL 1 1
2 BMA 1 1
3 GXL 1 1
4 GLA 1 1
5 ALL 1 1
6 GLC 1 1
7 BGC 1 1
8 GIV 1 1
9 MAN 1 1
10 WOO 1 1
11 32O 0.653846 0.866667
12 RIB 0.653846 0.866667
13 FUB 0.653846 0.866667
14 Z6J 0.653846 0.866667
15 AHR 0.653846 0.866667
16 BMA BMA MAN 0.545455 0.823529
17 GLA BGC 0.511628 0.848485
18 LAK 0.511628 0.848485
19 BGC GLA 0.511628 0.848485
20 GLA BMA 0.511628 0.848485
21 MAN BMA 0.511628 0.848485
22 GLA GLC 0.511628 0.848485
23 GAL GAL 0.511628 0.848485
24 MLB 0.511628 0.848485
25 BMA GLA 0.511628 0.848485
26 BMA BMA BMA BMA BMA BMA MAN 0.5 0.823529
27 YDR 0.5 0.8
28 MAN BMA BMA BMA BMA BMA 0.5 0.823529
29 GLC GLC GLC GLC BGC 0.488889 0.848485
30 GLC GLC GLC 0.488889 0.848485
31 MAN MAN MAN 0.488889 0.848485
32 GLC GLC GLC GLC GLC BGC 0.488889 0.848485
33 BGP 0.461538 0.675
34 G6P 0.461538 0.675
35 M6P 0.461538 0.675
36 A6P 0.461538 0.675
37 M6D 0.461538 0.675
38 BG6 0.461538 0.675
39 SHG 0.457143 0.875
40 GAF 0.457143 0.875
41 G2F 0.457143 0.875
42 X6X 0.457143 0.777778
43 2FG 0.457143 0.875
44 G3F 0.457143 0.875
45 PA1 0.457143 0.777778
46 1GN 0.457143 0.777778
47 GCS 0.457143 0.777778
48 2H5 0.457143 0.875
49 LB2 0.454545 0.848485
50 BGC BMA 0.454545 0.848485
51 BGC GAL 0.454545 0.848485
52 MAL 0.454545 0.848485
53 GLC GAL 0.454545 0.848485
54 M3M 0.454545 0.848485
55 GLA GAL 0.454545 0.848485
56 MAB 0.454545 0.848485
57 GLC BGC 0.454545 0.848485
58 BMA BMA 0.454545 0.848485
59 LBT 0.454545 0.848485
60 MAL MAL 0.454545 0.823529
61 CBK 0.454545 0.848485
62 GLA GLA 0.454545 0.848485
63 MAN GLC 0.454545 0.848485
64 CBI 0.454545 0.848485
65 N9S 0.454545 0.848485
66 GAL GLC 0.454545 0.848485
67 BMA GAL 0.454545 0.848485
68 B2G 0.454545 0.848485
69 BGC GLC 0.454545 0.848485
70 LAT 0.454545 0.848485
71 GAL BGC 0.454545 0.848485
72 3MG 0.444444 0.875
73 TCB 0.444444 0.8
74 GLC SGC 0.444444 0.8
75 YIO 0.441176 0.870968
76 2GS 0.432432 0.875
77 BGC BGC 0.431818 0.848485
78 2M4 0.431818 0.848485
79 MAN MAN 0.431818 0.848485
80 AHR AHR 0.428571 0.764706
81 GLF 0.428571 0.84375
82 FUB AHR 0.428571 0.764706
83 CT3 0.416667 0.848485
84 GLC BGC GLC 0.416667 0.848485
85 MLR 0.416667 0.848485
86 GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
87 GLC GLC GLC GLC GLC 0.416667 0.848485
88 GAL FUC 0.416667 0.848485
89 BMA BMA BMA 0.416667 0.848485
90 CTR 0.416667 0.848485
91 BGC GLC GLC 0.416667 0.848485
92 BGC GLC GLC GLC GLC 0.416667 0.848485
93 MAN MAN BMA BMA BMA BMA 0.416667 0.848485
94 GLC GAL GAL 0.416667 0.848485
95 B4G 0.416667 0.848485
96 CEX 0.416667 0.848485
97 MAN BMA BMA BMA BMA 0.416667 0.848485
98 BMA BMA BMA BMA BMA 0.416667 0.848485
99 GLC BGC BGC BGC BGC BGC 0.416667 0.848485
100 CTT 0.416667 0.848485
101 GLC GLC BGC 0.416667 0.848485
102 DXI 0.416667 0.848485
103 GLC GLC BGC GLC GLC GLC GLC 0.416667 0.848485
104 BGC GLC GLC GLC 0.416667 0.848485
105 BGC BGC BGC GLC 0.416667 0.848485
106 BGC BGC BGC BGC BGC BGC 0.416667 0.848485
107 BMA BMA BMA BMA BMA BMA 0.416667 0.848485
108 MTT 0.416667 0.848485
109 BMA MAN BMA 0.416667 0.848485
110 BGC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
111 CE5 0.416667 0.848485
112 GAL GAL GAL 0.416667 0.848485
113 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.416667 0.848485
114 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
115 GLA GAL GLC 0.416667 0.848485
116 CE6 0.416667 0.848485
117 GLC BGC BGC BGC BGC 0.416667 0.848485
118 GLC BGC BGC 0.416667 0.848485
119 MAN BMA BMA 0.416667 0.848485
120 MT7 0.416667 0.848485
121 GLC GLC GLC GLC GLC GLC GLC GLC 0.416667 0.848485
122 CE8 0.416667 0.848485
123 CEY 0.416667 0.848485
124 BGC BGC BGC 0.408163 0.848485
125 BGC BGC BGC BGC BGC 0.408163 0.848485
126 GLC BGC BGC BGC BGC BGC BGC 0.408163 0.848485
127 SGC SGC BGC 0.408163 0.8
128 GLC BGC BGC BGC 0.408163 0.848485
129 BGC BGC BGC ASO BGC BGC ASO 0.408163 0.848485
130 BGC BGC BGC GLC BGC BGC 0.408163 0.848485
131 TRE 0.405405 0.848485
132 1LL 0.405405 0.771429
133 TDG 0.405405 0.771429
134 BM3 0.404762 0.7
135 NDG 0.404762 0.7
136 NAG 0.404762 0.7
137 HSQ 0.404762 0.7
138 A2G 0.404762 0.7
139 NGA 0.404762 0.7
140 FUB AHR AHR 0.4 0.764706
141 AHR AHR AHR 0.4 0.764706
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2B3B; Ligand: GLC; Similar sites found: 22
This union binding pocket(no: 1) in the query (biounit: 2b3b.bio5) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1TFZ 869 0.01019 0.41765 2.25
2 4OCJ NDG 0.03543 0.4092 2.63852
3 5IXG OTP 0.04217 0.4121 2.95858
4 1SQI 869 0.004041 0.4316 3.05344
5 2AMT GPP 0.01714 0.4141 3.14465
6 1IOW ADP 0.03355 0.40742 3.26797
7 1IOW PHY 0.03355 0.40742 3.26797
8 4WUJ FMN 0.0197 0.40158 4.08163
9 5L92 C0R 0.03205 0.40393 4.75
10 2AXR ABL 0.01026 0.40993 5.25
11 3ZO7 K6H 0.01021 0.40261 5.31915
12 4MNS 2AX 0.02742 0.42393 5.66038
13 2VK4 TPP 0.01955 0.41117 6.75
14 1ZBQ NAD 0.03979 0.40241 7.03364
15 5LYH 7B8 0.02613 0.40468 7.25389
16 4J8T DOG 0.00506 0.40123 8.75912
17 1QY1 PRZ 0.01135 0.41704 9.1954
18 2HZQ STR 0.009078 0.41166 9.1954
19 5IXH OTP 0.03235 0.41591 9.93789
20 5SVV FMN 0.02176 0.40115 12.4088
21 2Z6C FMN 0.01895 0.40242 13.9535
22 5DVI BGC 0.0000000009879 0.74093 42.5
Pocket No.: 2; Query (leader) PDB : 2B3B; Ligand: GLC; Similar sites found: 5
This union binding pocket(no: 2) in the query (biounit: 2b3b.bio2) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4L6H HCS 0.01591 0.40023 2.75
2 3KH5 AMP 0.02822 0.42477 4.64286
3 3KH5 ADP 0.03912 0.42477 4.64286
4 1IY8 NAD 0.03723 0.40284 5.99251
5 4EES FMN 0.02124 0.40168 13.913
Pocket No.: 3; Query (leader) PDB : 2B3B; Ligand: GLC; Similar sites found: 5
This union binding pocket(no: 3) in the query (biounit: 2b3b.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1P3D ANP 0.0229 0.40003 3
2 5MWK RAM ARA GAL 8PK 8OQ RAM 0.014 0.4071 4.5
3 4OCV ANP 0.01428 0.40854 5.27704
4 2Q2V NAD 0.03915 0.40385 5.4902
5 4R38 RBF 0.02058 0.40237 8.57143
Pocket No.: 4; Query (leader) PDB : 2B3B; Ligand: GLC; Similar sites found: 2
This union binding pocket(no: 4) in the query (biounit: 2b3b.bio6) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2Y88 2ER 0.03481 0.40862 6.55738
2 2ZAT NAP 0.03244 0.40484 10.3846
Pocket No.: 5; Query (leader) PDB : 2B3B; Ligand: BGC; Similar sites found: 21
This union binding pocket(no: 5) in the query (biounit: 2b3b.bio4) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1TFZ 869 0.01413 0.41056 2.25
2 4OCJ NDG 0.02601 0.41638 2.63852
3 1SQI 869 0.005511 0.425 3.05344
4 2AMT GPP 0.01787 0.41318 3.14465
5 1IOW PHY 0.03617 0.40568 3.26797
6 1IOW ADP 0.03617 0.40568 3.26797
7 2DKN NAI 0.03628 0.40111 3.52941
8 1X1T NAD 0.0448 0.40073 3.84615
9 3KH5 AMP 0.02994 0.42335 4.64286
10 2AXR ABL 0.01009 0.41069 5.25
11 4MNS 2AX 0.02717 0.42415 5.66038
12 1IY8 NAD 0.03511 0.40418 5.99251
13 2Y88 2ER 0.04856 0.40087 6.55738
14 2VK4 TPP 0.01895 0.41187 6.75
15 1ZBQ NAD 0.04355 0.40139 7.03364
16 5LYH 7B8 0.02401 0.40658 7.25389
17 4J8T DOG 0.004726 0.40219 8.75912
18 2HZQ STR 0.01227 0.40493 9.1954
19 5SVV FMN 0.02259 0.40034 12.4088
20 2Z6C FMN 0.01544 0.40686 13.9535
21 5DVI BGC 0.000000001025 0.74016 42.5
Pocket No.: 6; Query (leader) PDB : 2B3B; Ligand: BGC; Similar sites found: 8
This union binding pocket(no: 6) in the query (biounit: 2b3b.bio3) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4L6H HCS 0.01543 0.40087 2.75
2 1P3D ANP 0.0223 0.40062 3
3 4WUJ FMN 0.01829 0.40318 4.08163
4 4OCV ANP 0.01653 0.40538 5.27704
5 4R38 RBF 0.01714 0.40635 8.57143
6 4YRY FAD 0.04136 0.41094 12.75
7 5BVB DOG 0.01024 0.40968 13.6364
8 4EES FMN 0.02243 0.40049 13.913
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