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Receptor
PDB id Resolution Class Description Source Keywords
2A9K 1.73 Å EC: 2.4.2.- CRYSTAL STRUCTURE OF THE C3BOT-NAD-RALA COMPLEX REVEALS A NO OF ACTION OF A BACTERIAL EXOENZYME HOMO SAPIENS EXOENZYME C3 BACTERIAL ADP-RIBOSYLTRANSFERASE RAL RHO GDBINDING PROTEIN BINDING-TRANSFERASE COMPLEX
Ref.: CRYSTAL STRUCTURE OF THE C3BOT-RALA COMPLEX REVEALS TYPE OF ACTION OF A BACTERIAL EXOENZYME. EMBO J. V. 24 3670 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:500;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:300;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
NAD B:400;
Valid;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2A9K 1.73 Å EC: 2.4.2.- CRYSTAL STRUCTURE OF THE C3BOT-NAD-RALA COMPLEX REVEALS A NO OF ACTION OF A BACTERIAL EXOENZYME HOMO SAPIENS EXOENZYME C3 BACTERIAL ADP-RIBOSYLTRANSFERASE RAL RHO GDBINDING PROTEIN BINDING-TRANSFERASE COMPLEX
Ref.: CRYSTAL STRUCTURE OF THE C3BOT-RALA COMPLEX REVEALS TYPE OF ACTION OF A BACTERIAL EXOENZYME. EMBO J. V. 24 3670 2005
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 2A9K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2A78 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 2A9K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2A78 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (47)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 204 families.
1 3QBT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
2 5WFO - 5UU C19 H16 Cl F N2 c1cc(ccc1N....
3 6FA3 Kd = 0.038 uM D1Z C30 H36 N4 O5 CN(C)Cc1cc....
4 5WFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 5O2T Kd = 3.9 nM GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
6 5WPM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 5WFR - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 5UFQ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 6AMB - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 6FA1 - D2Z C20 H25 N2 O4 C[NH+](C)C....
11 5UFE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 5WFP - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
13 5WHB - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
14 5WPL - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 5XCO - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
16 1NVU - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
17 5WHE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
18 3KUC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
19 1C1Y - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
20 5TAR - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
21 4DXA - GSP C10 H16 N5 O13 P3 S c1nc2c(n1[....
22 4HDO - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
23 3MJH - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
24 5E95 Kd = 15.7 nM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
25 3CF6 - SP1 C10 H12 N5 O5 P S c1nc(c2c(n....
26 2CJW Kd = 2.5 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
27 6FA4 Kd = 0.051 uM D1W C23 H25 N3 O3 CN(C)Cc1cc....
28 2C5L - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
29 4K81 - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
30 1LFD - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
31 4KVG - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
32 3TNF - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
33 1ZC4 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
34 1ZC3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
35 2A9K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
36 2A78 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
37 1WQ1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
38 3TKL - GTP C10 H16 N5 O14 P3 c1nc2c(n1[....
39 3DDC - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
40 3KUD - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
41 1TU3 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
42 1UAD Ka = 7260000 M^-1 GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
43 5O74 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
44 3SFV - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
45 4URZ Kd = 3 mM VJP C11 H14 N2 O3 S c1cc(ccc1N....
46 4URX Kd = 1.3 mM HXY C11 H14 Br N c1cc(ccc1C....
47 4URY Kd = 6 mM RV1 C10 H12 N2 O3 S c1cc(ccc1N....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Ligand no: 2; Ligand: NAD; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NHD 0.821429 0.972222
3 NAP 0.811966 0.986111
4 NFD 0.791304 0.946667
5 NXX 0.765766 0.972603
6 DND 0.765766 0.972603
7 AMP NAD 0.74359 0.972222
8 ZID 0.737705 0.986111
9 NAQ 0.729508 0.934211
10 NAE 0.721311 0.959459
11 NA0 0.712 0.972603
12 TAP 0.704 0.921053
13 NDE 0.689922 0.972603
14 NAJ 0.683333 0.972222
15 NDC 0.679389 0.934211
16 NDO 0.674603 0.958904
17 N01 0.656 0.972222
18 CNA 0.642276 0.972603
19 NBP 0.621212 0.922078
20 8ID 0.609756 0.922078
21 A2D 0.576923 0.958333
22 ADP 0.575472 0.931507
23 NGD 0.574803 0.922078
24 BA3 0.566038 0.958333
25 M33 0.564815 0.918919
26 ADP PO3 0.563636 0.957747
27 B4P 0.560748 0.958333
28 AP5 0.560748 0.958333
29 AN2 0.555556 0.918919
30 AT4 0.555556 0.894737
31 GAP 0.553571 0.932432
32 OOB 0.551724 0.972222
33 CA0 0.550459 0.932432
34 9JJ 0.546053 0.898734
35 HEJ 0.545455 0.931507
36 ACP 0.545455 0.906667
37 ATP 0.545455 0.931507
38 DQV 0.544 0.972222
39 ADP ALF 0.54386 0.883117
40 ALF ADP 0.54386 0.883117
41 DAL AMP 0.543103 0.945205
42 APR 0.540541 0.931507
43 AQP 0.540541 0.931507
44 AR6 0.540541 0.931507
45 5FA 0.540541 0.931507
46 ADP VO4 0.53913 0.945205
47 VO4 ADP 0.53913 0.945205
48 AD9 0.535714 0.906667
49 SAP 0.535714 0.883117
50 AGS 0.535714 0.883117
51 WAQ 0.533333 0.896104
52 ABM 0.53271 0.905405
53 DLL 0.529412 0.972222
54 00A 0.529412 0.921053
55 ACQ 0.526316 0.906667
56 NJP 0.526316 0.959459
57 ANP 0.526316 0.906667
58 OAD 0.525 0.932432
59 ADX 0.522523 0.839506
60 5AL 0.521739 0.945205
61 A1R 0.521008 0.871795
62 9SN 0.520325 0.909091
63 A 0.518868 0.930556
64 AMP 0.518868 0.930556
65 50T 0.517857 0.893333
66 ATF 0.517241 0.894737
67 1ZZ 0.516393 0.851852
68 3OD 0.516393 0.932432
69 SON 0.513514 0.92
70 PRX 0.513274 0.881579
71 6YZ 0.512821 0.906667
72 SRP 0.512821 0.92
73 9X8 0.512397 0.883117
74 ADP BMA 0.512397 0.932432
75 3UK 0.512397 0.958904
76 MYR AMP 0.512195 0.851852
77 NAJ PZO 0.510949 0.909091
78 NMN 0.509434 0.875
79 A3R 0.508333 0.871795
80 B5V 0.508197 0.945946
81 AMP DBH 0.507937 0.906667
82 A22 0.504202 0.945205
83 ATP A A A 0.504 0.971831
84 B5M 0.504 0.933333
85 FA5 0.504 0.945946
86 8QN 0.5 0.945205
87 NAX 0.496183 0.886076
88 TYR AMP 0.496063 0.933333
89 PR8 0.495935 0.8625
90 AMO 0.495868 0.92
91 ADQ 0.495868 0.932432
92 4AD 0.495868 0.933333
93 PAJ 0.495868 0.873418
94 A12 0.495495 0.894737
95 AP2 0.495495 0.894737
96 AHZ 0.492308 0.851852
97 YAP 0.492063 0.933333
98 FYA 0.491935 0.918919
99 AHX 0.491803 0.884615
100 4UU 0.488372 0.933333
101 5SV 0.487603 0.8375
102 TAT 0.487179 0.894737
103 T99 0.487179 0.894737
104 APC 0.486957 0.894737
105 SRA 0.486239 0.881579
106 6V0 0.484848 0.909091
107 NAI 0.484848 0.921053
108 GTA 0.484615 0.898734
109 A A 0.483871 0.958333
110 LAD 0.483871 0.873418
111 AU1 0.482456 0.906667
112 F2R 0.481752 0.831325
113 OMR 0.481203 0.841463
114 TXE 0.481203 0.921053
115 AF3 ADP 3PG 0.481203 0.873418
116 LAQ 0.480916 0.851852
117 G3A 0.48062 0.909091
118 B5Y 0.480315 0.933333
119 NB8 0.48 0.884615
120 TXA 0.48 0.92
121 BIS 0.48 0.871795
122 ME8 0.48 0.851852
123 PTJ 0.48 0.884615
124 139 0.477941 0.886076
125 LPA AMP 0.477273 0.851852
126 AFH 0.476923 0.873418
127 AR6 AR6 0.476923 0.958333
128 G5P 0.476923 0.909091
129 ARG AMP 0.476923 0.841463
130 25L 0.47619 0.945205
131 NAJ PYZ 0.475524 0.864198
132 25A 0.47541 0.958333
133 9ZA 0.47541 0.896104
134 9ZD 0.47541 0.896104
135 DZD 0.47482 0.897436
136 TXD 0.473684 0.921053
137 4UV 0.472868 0.933333
138 TYM 0.470149 0.945946
139 RBY 0.470085 0.894737
140 ADV 0.470085 0.894737
141 4TA 0.467626 0.864198
142 48N 0.466165 0.884615
143 XAH 0.465116 0.851852
144 4UW 0.462687 0.897436
145 M24 0.461538 0.886076
146 80F 0.460993 0.853659
147 IOT 0.459854 0.821429
148 T5A 0.456522 0.853659
149 EAD 0.455782 0.886076
150 MAP 0.455285 0.883117
151 GA7 0.454545 0.894737
152 BT5 0.453901 0.821429
153 A4P 0.452555 0.833333
154 UP5 0.451852 0.933333
155 PAP 0.445378 0.917808
156 4TC 0.445255 0.909091
157 AP0 0.445255 0.884615
158 YLP 0.444444 0.831325
159 P1H 0.443709 0.864198
160 AOC 0.442478 0.810811
161 Z5A 0.439189 0.833333
162 LMS 0.4375 0.817073
163 2A5 0.436975 0.857143
164 A G 0.43662 0.921053
165 G A A A 0.43662 0.909091
166 COD 0.43662 0.802326
167 ADJ 0.435714 0.841463
168 YLB 0.434783 0.831325
169 YLC 0.434783 0.851852
170 U A G G 0.433566 0.921053
171 ATR 0.433333 0.90411
172 7MD 0.432836 0.851852
173 8X1 0.432 0.764045
174 G5A 0.429752 0.790698
175 PO4 PO4 A A A A PO4 0.429688 0.943662
176 TAD 0.42963 0.873418
177 5AS 0.42735 0.770115
178 BTX 0.426573 0.831325
179 YLA 0.425532 0.831325
180 DSZ 0.425197 0.790698
181 NCN 0.424779 0.805556
182 UPA 0.42446 0.921053
183 8PZ 0.424242 0.811765
184 VMS 0.424 0.8
185 54H 0.424 0.8
186 9K8 0.423077 0.744444
187 N0B 0.422819 0.853659
188 6AD 0.422764 0.85
189 AYB 0.422535 0.821429
190 7D3 0.422414 0.844156
191 YLY 0.421769 0.821429
192 TSB 0.420635 0.809524
193 ODP 0.41958 0.922078
194 AV2 0.419355 0.855263
195 FB0 0.419355 0.775281
196 A5A 0.419355 0.819277
197 NNR 0.419048 0.739726
198 A A A 0.418605 0.918919
199 U A 0.417808 0.946667
200 649 0.417266 0.775281
201 NMN AMP PO4 0.416667 0.933333
202 SSA 0.416 0.790698
203 P5A 0.415385 0.755556
204 LSS 0.414062 0.772727
205 A2R 0.412698 0.918919
206 52H 0.412698 0.790698
207 JB6 0.412214 0.896104
208 5N5 0.411215 0.783784
209 YSA 0.410448 0.811765
210 53H 0.409449 0.790698
211 5CA 0.409449 0.790698
212 ITT 0.408333 0.878378
213 7D4 0.408333 0.844156
214 NA7 0.407692 0.894737
215 LEU LMS 0.407692 0.784091
216 5CD 0.407407 0.794521
217 0WD 0.406897 0.909091
218 A3P 0.40678 0.930556
219 HFD 0.406504 0.883117
220 AVV 0.40625 0.860759
221 RAB 0.40566 0.808219
222 XYA 0.40566 0.808219
223 ADN 0.40566 0.808219
224 FDA 0.405063 0.823529
225 GSU 0.40458 0.790698
226 7MC 0.404255 0.831325
227 NSS 0.403101 0.811765
228 6FA 0.402516 0.853659
229 PPS 0.4 0.817073
230 NVA LMS 0.4 0.784091
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2A9K; Ligand: NAD; Similar sites found with APoc: 75
This union binding pocket(no: 1) in the query (biounit: 2a9k.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1WLJ U5P 1.5873
2 1QKQ MAN 2.11268
3 1SBR VIB 2.13904
4 5ZJ5 NAI 2.6738
5 2JLD ALA GLY GLY ALA ALA ALA ALA ALA 2.69058
6 6F4W FMC 2.69058
7 1KKR 2AS 3.13901
8 5N0O SAM 3.20856
9 1L7N ALF 3.31754
10 3LGS ADE 3.58744
11 2FUE M1P 3.74332
12 4GV4 MEJ 4.03587
13 6A46 DCM 4.03587
14 5LYH 7B8 4.14508
15 2PZE ATP 4.4843
16 6FBA D48 4.4843
17 5YSI NCA 4.81283
18 1TOX NAD 4.93274
19 1Q11 TYE 4.93274
20 4BUY F37 4.93274
21 3IT7 TLA 4.94506
22 4Z9D NAD 5.14286
23 4J3L AJ5 5.2381
24 5LX6 78P 5.34759
25 1NW4 IMH 5.8296
26 3CBC DBS 5.8296
27 6EK3 OUL 5.88235
28 2G30 ALA ALA PHE 5.88235
29 5D3X 4IP 5.98802
30 6BHV DQV 6.41711
31 4PJT 2YQ 6.41711
32 1DTP APU 6.41711
33 6MJF SAH 6.72646
34 3E7S AT2 6.72646
35 3SAO DBH 6.875
36 1VJ7 GPX 6.95187
37 4NYT PC 6.95187
38 4YJK URA 6.95187
39 1H3F TYE 7.17489
40 5TPV TYD 7.18954
41 5EWK P34 8.02139
42 2HBL AMP 8.02139
43 3KL3 GCU 8.52018
44 5W75 SUC 8.55615
45 3KVY URA 8.96861
46 2RCU BUJ 8.96861
47 1USF NAP 8.98876
48 1NE7 16G 9.41704
49 3ESS 18N 9.41704
50 1VKF CIT 9.57447
51 4RF7 ARG 9.62567
52 4LOC OXM 9.62567
53 2Z3U CRR 9.86547
54 3Q9O NAD 9.86547
55 3I7V B4P 10.4478
56 2XG5 EC5 10.9827
57 2XG5 EC2 10.9827
58 3KJD 78P 11.2299
59 1LVW TYD 11.2299
60 4MSG 2C6 12.1076
61 4ZH7 FUC GAL NAG GAL FUC 13.0045
62 3QPB URA 13.369
63 1G51 AMP 14.4385
64 1XK9 P34 15.814
65 3B82 NAD 15.942
66 1OG1 TAD 16.3717
67 4OKE AMP 17.8571
68 4YC0 5OF 18.3857
69 5LY1 PPI 21.0762
70 5NWD 9C8 22.449
71 5OF1 SAL 22.4599
72 2A5F NAD 34.2857
73 5H04 NAI 40.3587
74 4H03 NAD 41.704
75 2WN6 NDP 43.0493
Pocket No.: 2; Query (leader) PDB : 2A9K; Ligand: GDP; Similar sites found with APoc: 599
This union binding pocket(no: 2) in the query (biounit: 2a9k.bio1) has 20 residues
No: Leader PDB Ligand Sequence Similarity
1 2W58 ADP None
2 2ZFZ ARG None
3 1W4R TTP 1.60428
4 5XKT GNP 2.6738
5 2JAP NDP 2.6738
6 3P4X ADP 2.69058
7 1T3D CYS 2.69058
8 4R43 GDP 3.13901
9 5C9P FUC 3.13901
10 2VVG ADP 3.20856
11 4U00 ADP 3.20856
12 2BEK ATP 3.20856
13 1DAK DPU 3.20856
14 1DAK ADP 3.20856
15 1Y63 ADP 3.26087
16 2IYL GDP 3.52113
17 6BYF CIT 3.52941
18 2Y65 ADP 3.58744
19 4GOX A3P 3.58744
20 4QOS ADP 3.58744
21 3BER AMP 3.58744
22 4IEE AGS 3.58744
23 6F5W KG1 3.58744
24 2QZ4 ADP 3.74332
25 1P72 ADP 3.74332
26 2FAH GDP 3.74332
27 1S3G AP5 3.74332
28 1IN4 ADP 3.74332
29 5VGR GDP 3.74332
30 1VKJ A3P 3.74332
31 2O0J ADP 3.74332
32 2XCU C5P 3.74332
33 4M9Q GNP 4.03587
34 4JLV ADP 4.03587
35 2NCD ADP 4.03587
36 5G41 AP5 4.03587
37 3VM7 GLC 4.03587
38 5KSP GDP 4.21053
39 1KK1 GNP 4.27807
40 3A1S GDP 4.27807
41 4LYA ATP 4.27807
42 1Q20 A3P 4.27807
43 1Q20 PLO 4.27807
44 1YXM ADE 4.27807
45 3BIB PSF 4.31034
46 2JAQ DCP 4.39024
47 2PZE ATP 4.4843
48 3EZ2 ADP 4.4843
49 3FKQ ATP 4.4843
50 2QEN ADP 4.4843
51 1F5N GNP 4.4843
52 6B8B ADP 4.4843
53 4TTQ ATP 4.4843
54 1E2K TMC 4.53172
55 4R2I ANP 4.7619
56 1BG2 ADP 4.81283
57 3COB ADP 4.81283
58 3B5J 12D 4.81283
59 1JI0 ATP 4.81283
60 5L3W GDP 4.81283
61 5GVR LMR 4.81283
62 1Z6T ADP 4.81283
63 1NY5 ADP 4.81283
64 1G6H ADP 4.81283
65 1SVM ATP 4.81283
66 3W6X HZP 4.81283
67 1G3M A3P 4.81283
68 1G3M PCQ 4.81283
69 2OBM ADP 4.89914
70 3FWY ADP 4.93274
71 3BFV ADP 4.93274
72 1XKV ATP 4.93274
73 1P9B GDP 4.93274
74 3ZS9 ADP ALF 4.93274
75 2WOJ ADP ALF 4.93274
76 1NHX PEP 4.93274
77 1NHX FTB 4.93274
78 2GMV UN8 4.93274
79 3IUY AMP 4.93274
80 2GMV PEP 4.93274
81 1AQU A3P 4.93274
82 1V6A TRE 4.93274
83 2B8W ALF 5GP 4.93274
84 1VHT BA3 5.04587
85 4AG5 ADP 5.34759
86 4KFU ACP 5.34759
87 4PX9 ADP 5.34759
88 2CE7 ADP 5.34759
89 1G3Q ADP 5.34759
90 1ION ADP 5.34759
91 2OZE AGS 5.34759
92 5HR5 ADP 5.34759
93 5FTB ANP 5.34759
94 5FHD ADP ALF 5.34759
95 4WOP CTP 5.34759
96 5MEX SZZ 5.34759
97 5MEX PAP 5.34759
98 2ZFI ADP 5.38117
99 3DC4 ADP 5.38117
100 3TMK T5A 5.55556
101 4BQS ADP 5.68182
102 4BQS K2Q 5.68182
103 1M7G AV2 5.6872
104 1M7G ADX 5.6872
105 1M7G ADP 5.6872
106 1KO8 6PG 5.71429
107 5ZXD ATP 5.8296
108 5X40 ACP 5.8296
109 5XQL C2E 5.8296
110 5W7Q GDP 5.88235
111 3CNL GNP 5.88235
112 3H4S ADP 5.88235
113 5L3V GDP 5.88235
114 3VX3 ADP 5.88235
115 4HSE ADP 5.88235
116 1G41 ADP 5.88235
117 4FRZ ADP 5.88235
118 4NE2 SH2 5.88235
119 4NE2 ADP 5.88235
120 5N69 ADP 5.88235
121 3QVV A3P 5.88235
122 5WRI A3P 5.88235
123 5WRJ A3P 5.88235
124 3QVV 3QV 5.88235
125 2QQ0 ANP 5.97826
126 2QQ0 THM 5.97826
127 2QQ0 TMP 5.97826
128 2QQ0 ADP 5.97826
129 3QF7 ANP 6
130 2PL3 ADP 6.27803
131 5L3S GNP 6.27803
132 1OS1 PYR 6.27803
133 1OS1 ATP 6.27803
134 1OE0 TTP 6.27803
135 1SVI GDP 6.41711
136 1V8K ANP 6.41711
137 4NON GDP 6.41711
138 2IS6 ADP 6.41711
139 3QXC ATP 6.41711
140 1UJ2 ADP 6.41711
141 1UJ2 C5P 6.41711
142 5Z69 AGS 6.41711
143 4OI4 ATP 6.41711
144 1XP8 AGS 6.41711
145 4ITM ATP 6.41711
146 4QM7 GTP 6.43275
147 4MKF AP5 6.45161
148 1OXV ANP 6.51558
149 6AIC AMP 6.54206
150 5IRR GSP 6.72646
151 5IRN ADP 6.72646
152 3HU3 AGS 6.72646
153 1T5C ADP 6.72646
154 4ZDJ UTP 6.72646
155 4QAG F95 6.76692
156 6CS8 F9Y 6.93069
157 1YRB GDP 6.95187
158 1TAD ALF 6.95187
159 1TAD GDP 6.95187
160 4KVA GTP 6.95187
161 1IWE IMP 6.95187
162 1QF5 GDP 6.95187
163 1QF5 RPL 6.95187
164 3DZD ADP 6.95187
165 4ZNL BEF ADP 6.95187
166 1OYY AGS 6.95187
167 2X7I CIT 6.95187
168 1RPN NDP 6.95187
169 3P9Y N7P THR SEP PRO SER TYR SET 6.95187
170 1NRJ GTP 6.96203
171 1XEX ATP 7.14286
172 1ZUI SKM 7.14286
173 4P7U 1PS 7.14286
174 3WY9 GDP 7.17489
175 3WYA GDP 7.17489
176 2C78 GNP 7.17489
177 1D2E GDP 7.17489
178 2C77 GNP 7.17489
179 5LTJ ADP 7.17489
180 1D2N ANP 7.35294
181 4P4T GDP 7.48663
182 4XTR ADP 7.48663
183 4XTR ATP 7.48663
184 4XVU ATP 7.48663
185 4Q1A 2XZ 7.48663
186 4Q1A UDP 7.48663
187 1F9V ADP 7.48663
188 2XAU ADP 7.48663
189 6FAA ADP 7.48663
190 2Z48 NGA 7.48663
191 5KDO GDP 7.62332
192 2OM2 GDP 7.62332
193 2WHX ADP 7.62332
194 1SVK ALF GDP 7.62332
195 5BQ5 ADP BEF 7.62332
196 5Y6N ADP 7.62332
197 5H68 AGS 7.62332
198 2JLR ANP 7.62332
199 6FMC DUE 7.62332
200 1L2T ATP 7.62332
201 2OFW ADX 7.69231
202 1GXU 2HP 7.69231
203 4OWK NGA 7.97101
204 5CK5 GDP 8.02139
205 2AWN ADP 8.02139
206 1CS4 GSP 8.02139
207 6AU6 GDP 8.02139
208 5U32 GDP 8.02139
209 3T34 GDP 8.02139
210 4YJ1 ADP 8.02139
211 2BIF ANP 8.02139
212 2BIF SIN 8.02139
213 3FVQ ATP 8.02139
214 5XDR ADP 8.02139
215 3B7G ANP 8.02139
216 4BFW ZVW 8.02139
217 1U0J ADP 8.02139
218 4IO2 GLU 8.02139
219 3HDY FAD 8.02139
220 1O9U ADZ 8.02139
221 3HDY GDU 8.02139
222 3HDY FDA 8.02139
223 3QDK QDK 8.02139
224 2ORV 4TA 8.02139
225 1BH2 GSP 8.07175
226 4XGU ADP 8.07175
227 1XF1 CIT 8.07175
228 4OKD GLC GLC GLC 8.07175
229 5BYK OAQ 8.07175
230 5BYK A3P 8.07175
231 3KTA AP5 8.09249
232 1UPT GTP 8.18713
233 5LB3 ADP 8.52018
234 5I0H ADP BEF 8.52018
235 5TIV A3P 8.52018
236 5W75 GDP 8.55615
237 2RCN GDP 8.55615
238 2WJG GDP 8.55615
239 1WDT GTP 8.55615
240 1R0X ATP 8.55615
241 3ZFD ANP 8.55615
242 1G6O ADP 8.55615
243 5ZBR ANP 8.55615
244 2VWT PYR 8.55615
245 2RAB FAD 8.55615
246 5H4S RAM 8.55615
247 2IMG MLT 8.60927
248 5WHT SIA GAL GLC 8.69565
249 5WHT SIA GAL 8.69565
250 1XX6 ADP 8.90052
251 2PEZ DAT 8.93855
252 2PEZ GGZ 8.93855
253 4RD0 GDP 8.96861
254 3E70 GDP 8.96861
255 5WC2 ADP 8.96861
256 3EWA ANP 8.96861
257 4FCW ADP 8.96861
258 5AK0 8V1 8.96861
259 4LJ9 ACP 8.96861
260 2WJH GDP 9.03614
261 2WJH FLC 9.03614
262 4HI0 GDP 9.04523
263 1GOJ ADP 9.09091
264 1LVG ADP 9.09091
265 5VHC BEF ADP 9.09091
266 4YMU ATP 9.09091
267 2QG6 NMN 9.09091
268 1OFH ADP 9.1954
269 1B0U ATP 9.41704
270 3RLF ANP 9.41704
271 4PJ3 ANP 9.41704
272 3TBK ANP 9.41704
273 2DPY ADP 9.62567
274 4MKG AP5 9.62567
275 3FB4 AP5 9.62567
276 3FYH ADP 9.62567
277 2GDJ ANP 9.62567
278 3BFX A3P 9.62567
279 5G3Y ADP 9.73451
280 5GT9 NAP 9.86547
281 2CDN ADP 9.95025
282 3UIE ANP 10
283 5KQG 6VX 10.1124
284 6A20 ADP 10.1604
285 2Q2Y ADP 10.1604
286 2Q2Y MKR 10.1604
287 1ZIN AP5 10.1604
288 5M7P ADP 10.1604
289 4QRH 0O2 10.1604
290 3VMF GTP 10.3139
291 5KSZ GCP 10.3139
292 1R6B ADP 10.3139
293 1AKY AP5 10.3139
294 1FP6 ADP 10.3806
295 2RGX AP5 10.6796
296 3U6B GDP 10.6952
297 4P3Y GDP 10.6952
298 3U6K GDP 10.6952
299 2BVN GNP 10.6952
300 5JBQ GDP 10.6952
301 4G5G GDP 10.6952
302 1D8T GDP 10.6952
303 4PC3 GDP 10.6952
304 6DEF GCP 10.6952
305 1XMV ADP 10.6952
306 2GK6 ADP 10.6952
307 1EXF GLY 10.6952
308 4NU0 AP5 10.6952
309 2FNA ADP 10.6952
310 2Z5F A3P 10.6952
311 4WZA ACP 10.7623
312 4WZA ADP 10.7623
313 4RZ3 ADP 10.7623
314 5I34 GDP 10.7623
315 1CR1 TTP 10.7623
316 4GBM A3P 10.7623
317 2ZTS ADP 10.7623
318 2J5V PCA 10.7623
319 1Z83 AP5 10.7623
320 4WZ6 ATP 11.0345
321 1FNN ADP 11.2108
322 4LH7 NMN 11.2108
323 3WXM GTP 11.2299
324 1YQT ADP 11.2299
325 2HF9 GSP 11.2299
326 2D2F ADP 11.2299
327 2C9O ADP 11.2299
328 4IHQ ADP 11.2299
329 1X6V ADP 11.2299
330 2CBZ ATP 11.2299
331 5YV5 ADP 11.2299
332 3MGB PAP 11.2299
333 1K4M CIT 11.2676
334 3QKT ANP 11.6592
335 4IOK ADP 11.6592
336 4IOK XPO 11.6592
337 1SKQ GDP 11.7647
338 3BOS CDP 11.7647
339 1TQ4 GDP 12.1076
340 4D81 ADP 12.1076
341 3Q9L ATP 12.1076
342 3NHB ADP 12.1076
343 4YS0 ADP 12.1076
344 2XT3 ADP 12.2093
345 3EC1 GDP 12.2995
346 4H1V GNP 12.2995
347 5ZB0 TYD 12.2995
348 5ZB0 ADP 12.2995
349 5UIV ADP 12.2995
350 5J1S ATP 12.2995
351 4TL6 ANP 12.2995
352 3IO3 ADP 12.3563
353 5A7Y SAH 12.5561
354 5H67 ATP 12.766
355 1SQ5 ADP 12.8342
356 1NN5 2DT 12.8342
357 1NN5 ANP 12.8342
358 1G8S MET 12.8342
359 2KIN ADP 13
360 4B47 GDP 13.0045
361 3KJI ADP 13.0045
362 1LVK MNT BEF 13.0045
363 4X8O AP5 13.0841
364 1W7J ADP BEF 13.245
365 1W5T ANP 13.369
366 1W5T ADP 13.369
367 2IXE ATP 13.369
368 2HCJ GDP 13.4529
369 3TK1 GDP 13.4529
370 1FQJ GDP 13.6054
371 1FQK GDP 13.6054
372 1FQK ALF 13.6054
373 1FQJ ALF 13.6054
374 4V03 ADP 13.9013
375 5BN3 ADP 13.9013
376 1IHU AF3 13.9013
377 1IHU ADP 13.9013
378 1QF9 C5P 13.9013
379 1QF9 ADP 13.9013
380 1QF9 ALF 13.9013
381 1OS7 TAU 13.9013
382 1G7S GDP 13.9037
383 2ODE ALF GDP 13.9037
384 4ZKD GDP 13.9037
385 4CVN ADP 14.1361
386 5MVR ADP 14.1975
387 5W76 GDP 14.3498
388 6G14 G4P 14.3498
389 5J1J ANP 14.3498
390 4LPS GDP 14.4385
391 1JJ7 ADP 14.4385
392 5GOE GDP 14.4385
393 3O2Q PRO THR SEP PRO SER TYR 14.4385
394 1PUJ GNP 14.7982
395 3DKP ADP 14.7982
396 1G7C 5GP 14.8936
397 4LC1 GDP 14.9733
398 3CX8 GSP 14.9733
399 3W5J GDP 14.9733
400 4YDS ATP 14.9733
401 3RC3 ANP 14.9733
402 2D7D ADP 15
403 1GOT GDP 15.0685
404 2V2V V12 15.2466
405 4NCN GTP 15.508
406 4TMZ GSP 15.508
407 1DAR GDP 15.508
408 1NJF ADP 15.508
409 2CHG ANP 15.508
410 1NJF AGS 15.508
411 5EXT ADP 15.508
412 4PFO ADP 15.6951
413 4ZG4 VO4 ADP 15.6951
414 3AB3 GDP 16.0428
415 1ZCB GDP 16.0428
416 4BAS GNP 16.0428
417 4E03 ADP 16.0428
418 2FSH ANP 16.0428
419 1RRC ADP 16.0428
420 5K5Z ANP 16.1435
421 1UKZ ADP 16.2562
422 2GJ8 ALF GDP 16.2791
423 3L6C MLI 16.5192
424 5YT0 GDP 16.5775
425 5FG3 GDP 16.5775
426 4KBF AMP 16.5775
427 2YOH WMJ 16.5775
428 1YTM ATP 16.5919
429 3ITJ CIT 17.1123
430 6C90 ADP 17.3077
431 1F2U ATP 17.4497
432 2VB6 ADP BEF 17.4888
433 2ZR9 DTP 17.6471
434 3ZQ6 ADP ALF 17.9372
435 5H7K GDP 18.1818
436 5H7J GCP 18.1818
437 3ZIA ADP 18.1818
438 3ZIA ATP 18.1818
439 1W0J ADP 18.1818
440 2CK3 ANP 18.1818
441 2V7Q ATP 18.1818
442 2V7Q ADP 18.1818
443 1W0J ADP BEF 18.1818
444 3H86 AP5 18.1818
445 2CK3 ADP 18.1818
446 6CRK GDP 18.3099
447 1GP2 GDP 18.3099
448 4DCT GDP 18.3857
449 3LRE ADP 18.7166
450 1B7T ADP 18.7166
451 1KK8 BEF ADP 18.7166
452 2GKS ADP 18.7166
453 5MZN ADP 18.7166
454 6B4K ANP 19.2513
455 4R98 GNH 19.5572
456 5HCN GCP 19.7861
457 3IIJ ADP 19.7861
458 1H65 GDP 20.3209
459 2WIC GNP 20.5993
460 5YJS SAL 20.6278
461 5IFS ADP 20.6751
462 3DEF GDP 20.8556
463 3A4M ADP 20.8556
464 4PPF FLC 20.8556
465 5TSH ADP 20.8556
466 5TSH ANP 20.8556
467 2XTZ GSP 21.0762
468 4A4Z ANP 21.3904
469 4J0Q GDP 21.9731
470 4OHY ANP 21.9731
471 3MD0 GDP 22.4599
472 2ZPA ADP 22.4599
473 1RJ9 GCP 23.5294
474 4IDN GNP 23.5294
475 1JJV ATP 24.2718
476 2XTN GTP 24.5989
477 4V0K GDP 26.0355
478 3PCR GTP 26.5432
479 2FH5 GTP 26.738
480 3DOE GTP 26.738
481 3AQ4 GDP 27.1739
482 3T12 GDP ALF 27.2727
483 3T1O GDP 27.2727
484 1WF3 GNP 27.2727
485 1HTW ADP 27.8481
486 4GOJ GNP 28.3422
487 4ZI2 GNP 28.3422
488 2OG2 MLI 28.3422
489 3B9Q MLI 28.3422
490 5L3R GCP 28.3422
491 1MR3 G3D 28.7293
492 5DI3 GNP 29.1892
493 1FZQ GDP 29.2818
494 5KUT GDP 29.9465
495 2X77 GDP 30.1587
496 3PQC GDP 31.016
497 1M2O GNP 31.016
498 1Y3A GDP 31.25
499 1KSH GDP 31.7204
500 1YZG GDP 32.4022
501 2ZEJ GDP 32.6087
502 1J2J GTP 33.1325
503 2J59 GTP 33.1325
504 1O3Y GTP 33.1325
505 5M04 GDP 33.6898
506 1RE0 GDP 34.1463
507 1S9D GDP 34.1463
508 2A5F GTP 34.2857
509 2QTV GNP 34.7305
510 1MKY GDP 34.7594
511 4KAX GTP 34.9112
512 2W83 GTP 35.7576
513 1ZJ6 G3D 36.3636
514 1K6M AGS 36.3636
515 3N5C GDP 37.037
516 1ZD9 GDP 38.5027
517 5EE5 GTP 39.1813
518 1F6B GDP 39.5722
519 1R4A GNP 40
520 4YLG GDP 40.4624
521 1GWN GTP 40.6417
522 5OEC GDP 41.5301
523 1M7B GTP 42.246
524 1A4R GNH 42.7808
525 1A4R GDP 42.7808
526 1NF3 GNP 42.7808
527 5UPK GNP 43.2432
528 1GRN GDP 43.3155
529 2NGR GDP 43.3155
530 4DID GDP 43.3155
531 4ITR GDP 43.3155
532 2WMO GTP 43.3155
533 3REF GDP 43.8503
534 3GJ4 GDP 44.385
535 3GJ7 GDP 44.385
536 3GJ5 GDP 44.385
537 3GJ8 GDP 44.385
538 3GJX GTP 44.385
539 1OW3 GDP 44.5596
540 4YC7 GNP 44.7514
541 3GJ0 GDP 44.9198
542 3GJ3 GDP 44.9198
543 5BXQ GDP 44.9198
544 5UWP GNP 44.9198
545 4HAT GNP 44.9198
546 5UWQ GNP 44.9198
547 5UWU GNP 44.9198
548 6CIT GNP 44.9198
549 5UWO GNP 44.9198
550 5DIF GNP 44.9198
551 5UWW GNP 44.9198
552 5UWS GNP 44.9198
553 5DHF GNP 44.9198
554 5UWH GNP 44.9198
555 5UWT GNP 44.9198
556 3CH5 GDP 44.9198
557 5UWR GNP 44.9198
558 1IBR GNP 44.9198
559 5UWI GNP 44.9198
560 5UWJ GNP 44.9198
561 5DI9 GNP 44.9198
562 1E96 GTP 45.9893
563 2GCO GNP 45.9893
564 2GCN GDP 45.9893
565 4U5X GNP 46.0674
566 1KMQ GNP 46.1957
567 1MH1 GNP 46.2366
568 1I4D GDP 46.5241
569 1DS6 GDP 46.5241
570 3M1I GTP 46.5241
571 3WYF GTP 46.5241
572 2WKQ GTP 46.5241
573 3SBD GNP 46.5241
574 3E5H GNP 46.6292
575 1G4U GDP 46.7391
576 4D0N GDP 47.027
577 6BC0 GSP 47.027
578 6BCB GSP 47.027
579 6BCA GSP 47.027
580 2J0V GDP 47.0588
581 3LXR GDP 47.0588
582 5IRC GDP 47.0588
583 4XOI GTP 47.2222
584 1CXZ GSP 47.2527
585 1RYH GNP 47.5936
586 5HPY GDP 47.5936
587 5JCP GDP ALF 47.5936
588 1WA5 GTP 47.7273
589 3WYG GTP 47.8022
590 1TX4 ALF GDP 48.5876
591 3RWO GDP 48.6486
592 1OIX GDP 48.6631
593 2FJU GSP 48.8764
594 1OIV GDP 49.1979
595 3CPJ GDP 49.1979
596 2W2X GSP 49.1979
597 1HE1 GDP 49.4318
598 3RAB GNP 49.7041
599 1Z06 GNP 49.7326
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