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Receptor
PDB id Resolution Class Description Source Keywords
2A4W 1.5 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF MITOMYCIN C-BINDING PROTEIN COMPLEXED WITH COPPER(II)-BLEOMYCIN A2 STREPTOMYCES CAESPITOSUS ALFA/BETA PROTEIN MITOMYCIN C-BINDING PROTEIN COPPER(II)- BLEOMYCIN A2 STRUCTURAL GENOMICS NPPSFA NATIONAL PROJECTON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES ANTIMICROBIAL PROTEIN
Ref.: THE MITOMYCIN C (MMC)-BINDING PROTEIN FROM MMC-PRODUCING MICROORGANISMS PROTECTS FROM THE LETHAL EFFECT OF BLEOMYCIN: CRYSTALLOGRAPHIC ANALYSIS TO ELUCIDATE THE BINDING MODE OF THE ANTIBIOTIC TO THE PROTEIN J.MOL.BIOL. V. 360 398
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BLM A:750;
Valid;
none;
submit data
1416.56 C55 H85 N17 O21 S3 Cc1c(...
CU A:751;
Invalid;
none;
submit data
63.546 Cu [Cu+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2A4W 1.5 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF MITOMYCIN C-BINDING PROTEIN COMPLEXED WITH COPPER(II)-BLEOMYCIN A2 STREPTOMYCES CAESPITOSUS ALFA/BETA PROTEIN MITOMYCIN C-BINDING PROTEIN COPPER(II)- BLEOMYCIN A2 STRUCTURAL GENOMICS NPPSFA NATIONAL PROJECTON PROTEIN STRUCTURAL AND FUNCTIONAL ANALYSES ANTIMICROBIAL PROTEIN
Ref.: THE MITOMYCIN C (MMC)-BINDING PROTEIN FROM MMC-PRODUCING MICROORGANISMS PROTECTS FROM THE LETHAL EFFECT OF BLEOMYCIN: CRYSTALLOGRAPHIC ANALYSIS TO ELUCIDATE THE BINDING MODE OF THE ANTIBIOTIC TO THE PROTEIN J.MOL.BIOL. V. 360 398
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 510 families.
1 2A4W - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
2 1KLL - MC C14 H16 N4 O5 CC1=C(C(=O....
3 2A4X - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 391 families.
1 2A4W - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
2 1KLL - MC C14 H16 N4 O5 CC1=C(C(=O....
3 2A4X - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 298 families.
1 2A4W - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
2 1KLL - MC C14 H16 N4 O5 CC1=C(C(=O....
3 2A4X - BLM C55 H85 N17 O21 S3 Cc1c(nc(nc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BLM; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 BLM 1 1
2 52G 0.553648 0.855556
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2A4W; Ligand: BLM; Similar sites found with APoc: 121
This union binding pocket(no: 1) in the query (biounit: 2a4w.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 2BOS GLA GAL None
2 2BOS GLA GAL GLC None
3 2AK5 ARG PRO PRO LYS PRO ARG PRO ARG None
4 6GNO XDI None
5 5B09 4MX None
6 1QY1 PRZ None
7 5VKI THR NGA GAL NAG None
8 5FPX GLY SER SER HIS HIS HIS HIS HIS None
9 1NWW HPN None
10 6GR0 F8W None
11 5BU3 4W9 None
12 4P7X AKG None
13 4P7X YCP None
14 5EFW FMN None
15 1I06 TZL None
16 5VX9 FUC GAL NAG GAL BGC None
17 3KFF ZBT None
18 3KFF XBT None
19 3VV1 GAL FUC 1.875
20 4IAW LIZ 2.17391
21 4LIT AKG 2.17391
22 2HZQ STR 2.17391
23 2YG2 S1P 2.17391
24 1OGZ EQU 2.4
25 1M6P M6P 2.89855
26 3I4X DST 2.89855
27 4GCZ FMN 2.89855
28 5ISY NAD 2.89855
29 4EE7 PIS 2.89855
30 6BU0 IHP 3.05344
31 3O5N BR0 3.57143
32 4QCK ASD 3.62319
33 5JSP DQY 3.62319
34 6FA4 D1W 3.62319
35 1NYW DAU 3.62319
36 5EO8 TFU 3.62319
37 4R38 RBF 3.62319
38 1J3R 6PG 3.62319
39 1DZT ATY 3.62319
40 5YSQ INS 3.62319
41 5LN8 GAL 3.81679
42 3ZGJ RMN 4.34783
43 2CM4 RCL 4.34783
44 5KJW 53C 4.34783
45 5F6U 5VK 4.34783
46 3QRC SCR 4.34783
47 6F5U CQN 4.34783
48 1OS7 AKG 4.34783
49 2WKQ FMN 4.34783
50 2JIG PD2 4.34783
51 1N5S ADL 4.46429
52 1Y7P RIP 5.07246
53 4C91 REL 5.07246
54 5GP0 GPP 5.07246
55 5D6T NGA 5.07246
56 5KEW 6SB 5.07246
57 4MZU TYD 5.07246
58 5FYR INS 5.07246
59 4BXF AKG 5.07246
60 3M3E GAL A2G NPO 5.07246
61 5GM5 CBI 5.07246
62 1Z0N BCD 5.20833
63 1OGX EQU 5.34351
64 1N9L FMN 5.50459
65 5FU3 BGC BGC BGC 5.66038
66 4MJ0 SIA SIA GAL 5.7971
67 5A1S FLC 5.7971
68 5DGR GCS 5.7971
69 2VFT SOR 5.7971
70 2GOO NDG 6.14035
71 3T50 FMN 6.25
72 5AIG VPR 6.4
73 6D61 4AA 6.52174
74 5X7Q GLC GLC GLC GLC 6.52174
75 4XJ6 GH3 6.52174
76 5X7Q GLC GLC GLC GLC GLC 6.52174
77 4K3H 1OM 6.77966
78 1CEB AMH 6.81818
79 1SQI 869 7.24638
80 4RLT FSE 7.24638
81 3A76 SPD 7.24638
82 4WUJ FMN 7.24638
83 2ZL7 FUC GAL NGA 7.24638
84 5K21 6QF 7.24638
85 3AVR OGA 7.24638
86 4GC1 MAN MAN 7.24638
87 2BYC FMN 7.29927
88 1DZK PRZ 7.97101
89 1ELI PYC 8.69565
90 4MA6 28E 8.69565
91 4RYV ZEA 9.03226
92 4JH6 FCN 9.42029
93 5SVV FMN 9.48905
94 4FFG LBS 10.1449
95 2G30 ALA ALA PHE 10.1449
96 4FFG 0U8 10.1449
97 1GT4 UNA 10.1449
98 2P7Q GG6 11.2782
99 4K55 H6P 11.2903
100 2Z77 HE7 11.5108
101 1H8S AIC 11.5942
102 5KWY C3S 12.0301
103 2R5V HHH 12.3188
104 5I0U DCY 12.3188
105 6GBV FMN 12.3188
106 2C49 ADN 12.3188
107 3RGA LSB 13.0435
108 1TFZ 869 14.4928
109 5JOP GAL BGC NAG GAL 14.4928
110 4QDF 30Q 15.2174
111 5C3R AKG 16.6667
112 5C3R HMU 16.6667
113 5OCG 9R5 17.3913
114 3GM5 CIT 18.8406
115 5TPV TYD 19.5652
116 2YP6 C6W 21.7391
117 4M1U A2G MBG 31.1594
118 1NKI PPF 38.5185
119 5V3D FCN 39.3103
120 5UMY TNN 40
121 1QIN GIP 42.7536
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