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Receptor
PDB id Resolution Class Description Source Keywords
1ZPD 1.86 Å EC: 4.1.1.1 PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS ZYMOMONAS MOBILIS ALCOHOL FERMENTATION THIAMIN DIPHOSPHATE DECARBOXYLASE
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS. IMPLICATIONS FOR SUBSTRATE ACTIVATION IN PYRUVATE DECARBOXYLASES. J.BIOL.CHEM. V. 273 20196 1998
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CIT A:610;
B:610;
E:610;
F:610;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
192.124 C6 H8 O7 C(C(=...
DPX A:600;
B:600;
E:600;
F:600;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
430.311 C11 H20 N4 O8 P2 S Cc1nc...
MG A:601;
B:601;
E:601;
F:601;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1ZPD 1.86 Å EC: 4.1.1.1 PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS ZYMOMONAS MOBILIS ALCOHOL FERMENTATION THIAMIN DIPHOSPHATE DECARBOXYLASE
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF PYRUVATE DECARBOXYLASE FROM ZYMOMONAS MOBILIS. IMPLICATIONS FOR SUBSTRATE ACTIVATION IN PYRUVATE DECARBOXYLASES. J.BIOL.CHEM. V. 273 20196 1998
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 2WVG - TPU C11 H18 N6 O7 P2 Cc1c(nnn1C....
2 3OE1 - TDL C15 H23 N4 O10 P2 S Cc1c(sc([n....
3 2WVA - PYR C3 H4 O3 CC(=O)C(=O....
4 1ZPD - DPX C11 H20 N4 O8 P2 S Cc1ncc(c(n....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2WVG - TPU C11 H18 N6 O7 P2 Cc1c(nnn1C....
2 3OE1 - TDL C15 H23 N4 O10 P2 S Cc1c(sc([n....
3 2WVA - PYR C3 H4 O3 CC(=O)C(=O....
4 1ZPD - DPX C11 H20 N4 O8 P2 S Cc1ncc(c(n....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2VK8 - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
2 1PYD - TDP C12 H18 N4 O7 P2 S Cc1c(sc[n+....
3 1QPB Kd = 44 mM PYM C3 H5 N O2 CC(=O)C(=O....
4 2VK1 - TPP PYR n/a n/a
5 1PVD - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
6 2VBG - R1T C15 H23 N3 O8 P2 S Cc1c(sc(c1....
7 2VBF - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
8 2WVG - TPU C11 H18 N6 O7 P2 Cc1c(nnn1C....
9 3OE1 - TDL C15 H23 N4 O10 P2 S Cc1c(sc([n....
10 2WVA - PYR C3 H4 O3 CC(=O)C(=O....
11 1ZPD - DPX C11 H20 N4 O8 P2 S Cc1ncc(c(n....
12 6EFG - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
13 2VK4 - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
14 2VJY - TPP C12 H19 N4 O7 P2 S Cc1c(sc[n+....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CIT; Similar ligands found: 4
No: Ligand ECFP6 Tc MDL keys Tc
1 CIT 1 1
2 7QD 0.653846 0.958333
3 HCA 0.576923 0.884615
4 MAH 0.44 0.807692
Ligand no: 2; Ligand: DPX; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 DPX 1 1
2 TP9 0.517241 0.9
3 G8G 0.43956 0.837838
4 PYI 0.430108 0.746667
5 MP5 0.424658 0.705882
6 TPU 0.417582 0.7125
7 TPP 0.4 0.734177
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1ZPD; Ligand: CIT; Similar sites found with APoc: 458
This union binding pocket(no: 1) in the query (biounit: 1zpd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 1W96 S1A 0.902527
2 3T58 FAD 0.963391
3 2CHN NGT 1.23239
4 5ABF XRJ 1.23239
5 5IKH 6BW 1.27273
6 2HKJ RDC 1.27932
7 5OHJ 9VE 1.42518
8 3WQT ANP 1.44628
9 5K7K 6RJ 1.46751
10 4M0R 644 1.58311
11 3JRX S1A 1.58451
12 6CGN DA 1.58451
13 4IVG ANP 1.58451
14 4IPE ANP 1.58451
15 3NT6 COA 1.58451
16 3NTA COA 1.58451
17 1M21 PHE CSI LEU PHA 1.59046
18 3NTD COA 1.59292
19 4U03 TLL 1.63934
20 4U03 GTP 1.63934
21 2OBD PCW 1.68067
22 1TMX HGX 1.70648
23 2C78 PUL 1.7284
24 4U0S ADP 1.74419
25 6C7D EOJ 1.75439
26 1HK8 DGT 1.76056
27 5GUE GGS 1.81269
28 5EHR 5OD 1.90114
29 4O1Z MXM 1.93662
30 4GBD MCF 1.96507
31 5UWA 8ND 1.97044
32 1EWF PC1 1.97368
33 2VL8 UDP 2.01465
34 2VL8 CTS 2.01465
35 5B4B LP5 2.01613
36 3NHT U46 2.02703
37 3E3U NVC 2.03046
38 4GU5 FAD 2.04082
39 1NP7 FAD 2.04499
40 4CDN FAD 2.07469
41 5OLK DTP 2.09302
42 1UOU CMU 2.1097
43 2Q2Y MKR 2.11268
44 2Q2Y ADP 2.11268
45 4RHP PEF 2.12766
46 5X4Q 7Z6 2.12766
47 4V24 GYR 2.15633
48 3ICS COA 2.21088
49 6B21 C9V 2.21675
50 3P9T TCL 2.28311
51 2YPO PHE 2.28873
52 4WZ8 3W7 2.28873
53 3LN0 52B 2.28873
54 4USF 6UI 2.30263
55 3SHZ 5CO 2.30548
56 2QZO KN1 2.32558
57 4L1F COS 2.34987
58 1YUC EPH 2.35294
59 4MG7 27H 2.35294
60 1N20 3AG 2.36794
61 5AAV GW5 2.38095
62 2BJ4 OHT 2.38095
63 2VHW NAI 2.38727
64 2QE4 JJ3 2.41935
65 6EKZ SNP 2.43902
66 1FCH TYR GLN SER LYS LEU 2.44565
67 1ZDU P3A 2.44898
68 5IM3 DTP 2.46479
69 4OKZ 3E9 2.46575
70 3ZCB ATP 2.52525
71 4B6C B5U 2.55102
72 3O01 DXC 2.5974
73 5XVR TRH 2.60417
74 2J4D FAD 2.64085
75 4ARE FLC 2.64085
76 4QEK GLC 2.65781
77 2UW1 GVM 2.66272
78 2FV5 541 2.68199
79 2JC9 ADN 2.7027
80 2OWZ CIT 2.71084
81 4LSJ LSJ 2.71318
82 3QP8 HL0 2.71739
83 1U3D FAD 2.75049
84 5OJY 9XB 2.75591
85 3ETG GWD 2.79441
86 3ETG GTP 2.79441
87 2Q1H AS4 2.8
88 1IYK MYA 2.80612
89 4LY9 S6P 2.8169
90 4LY9 1YY 2.8169
91 2PX6 DH9 2.8481
92 5ZKC 3C0 2.85036
93 1NHZ 486 2.85714
94 5G5W R8C 2.85714
95 4PGK Y69 2.86885
96 2XSU PIE 2.88462
97 1GNI OLA 2.90598
98 6CC0 EWM 2.95359
99 3DZT EAH 2.9703
100 5K52 OCD 2.99296
101 5N5U 7N8 2.99296
102 2Y31 SMQ 2.99625
103 5J6A P46 3
104 4ETZ C2E 3.0303
105 4POJ 2VP 3.0303
106 1UDY FAD 3.0303
107 1UDY CS8 3.0303
108 1CL2 PPG 3.03797
109 5EPO NAP 3.05344
110 6C1R EFD 3.08057
111 2WUF KEM 3.09278
112 3HLX PQQ 3.10078
113 3TN7 NJP 3.11284
114 4OHU NAD 3.11419
115 4OHU 2TK 3.11419
116 5MBC FMN 3.11615
117 4DR9 BB2 3.125
118 1KPG 16A 3.13589
119 5V3Y 5V8 3.14685
120 4S1B 2BA 3.15315
121 6F6E PLM 3.16456
122 4ZBR DIF 3.16901
123 4ZBR NPS 3.16901
124 2E9L PLM 3.19829
125 2E9L OLA 3.19829
126 2WPX ACO 3.24484
127 2ALG DAO 3.26087
128 2ALG HP6 3.26087
129 2E2R 2OH 3.27869
130 1R6N 434 3.31754
131 4XU6 TDA 3.33333
132 4FDV 0UK 3.34928
133 3FAL LO2 3.38346
134 5UQK U2F 3.40502
135 3G58 988 3.41207
136 1M7Y PPG 3.44828
137 4AIG FLX 3.48259
138 6GL8 F3Q 3.48837
139 4W97 UCA 3.5
140 2I0G I0G 3.50195
141 1XM4 PIL 3.51759
142 1YKD CMP 3.51759
143 1XMY ROL 3.51759
144 1XMU ROF 3.51759
145 1U25 IHS 3.56083
146 5Z1N PEF 3.57143
147 5MWY YNU 3.60656
148 5L7G 6QE 3.60656
149 2C3Q GTX 3.64372
150 3WQM B29 3.65448
151 5LGA 6VH 3.66667
152 5AZC PGT 3.66667
153 1ZED PNP 3.71901
154 1MI3 NAD 3.72671
155 6C28 WCA 3.76344
156 3ET3 ET1 3.76712
157 5CSD ACD 3.77358
158 4F06 PHB 3.77358
159 3ZLR X0B 3.79747
160 2R40 EPH 3.80228
161 2Z7I 742 3.82353
162 3G5K BB2 3.82514
163 4OAR 2S0 3.87324
164 1RDT L79 3.87324
165 1SR7 MOF 3.87324
166 2HFP NSI 3.90071
167 4HEE 14R 3.90071
168 5LX9 OLB 3.90879
169 5LX9 OLA 3.90879
170 5M37 9SZ 3.91304
171 5N9T 8QQ 3.92157
172 5M36 9SZ 3.93013
173 4EOX 0S5 3.94089
174 6BYM HC3 3.94089
175 3SJU NDP 3.94265
176 1NTV ASN PHE ASP ASN PRO VAL TYR ARG LYS THR 3.94737
177 1GQ2 NAP 3.96396
178 3GWT 066 3.96601
179 3F8C HT1 3.96825
180 2P4Y C03 3.97112
181 4UDB CV7 4.04412
182 1FM9 9CR 4.04412
183 3FUR Z12 4.04412
184 1FM9 570 4.04412
185 3H0A D30 4.04412
186 3G9E RO7 4.05904
187 5N7O 69Y 4.0724
188 5LPA 71R 4.07407
189 5LPA ATP 4.07407
190 5X93 K87 4.09483
191 5HGZ ACO 4.11523
192 3M6P BB2 4.14508
193 3HR1 PF9 4.21053
194 3W5N RAM 4.22535
195 2RH1 CLR 4.22535
196 2RH1 CAU 4.22535
197 1Q3A NGH 4.24242
198 5EEH SAH 4.25532
199 5EEH P9P 4.25532
200 2ORV 4TA 4.2735
201 3G4G D71 4.27553
202 5HCV 60R 4.28016
203 5MWE TCE 4.28571
204 3OKI OKI 4.29185
205 2C43 COA 4.33437
206 5TUX ECH 4.33437
207 2A3I C0R 4.34783
208 2PFC PLM 4.37158
209 4K4D HFQ 4.37956
210 4XRZ SI6 4.38413
211 6A5Y 9CR 4.38596
212 4E2J MOF 4.4
213 2YB9 HA0 4.40141
214 3BQ5 HCS 4.40141
215 3GN8 DEX 4.41767
216 6CZY PMP 4.41989
217 4OIV XX9 4.42478
218 5UFS 1TA 4.43548
219 3PE2 E1B 4.45104
220 6MPT C30 4.54545
221 2X5W K2B 4.54545
222 3C56 PH4 4.56026
223 1YQZ FAD 4.56621
224 1QSM ACO 4.60526
225 1F06 NDP 4.6875
226 1F06 2NP 4.6875
227 5C2H 4XU 4.69613
228 5ZM0 FAD 4.71513
229 5XK9 DMA 4.74138
230 5XK9 GST 4.74138
231 4DW4 U5P 4.79042
232 2OKL BB2 4.86486
233 1YMT DR9 4.87805
234 3EKK GS2 4.88599
235 5NM7 GLY 4.88722
236 3B9Z CO2 4.89691
237 4WH9 3M8 4.91803
238 1N1G BCP 4.91803
239 5V4R MGT 4.93827
240 3RGA ILD 4.947
241 2VWA PTY 4.9505
242 2VAT COA 4.95496
243 5K53 STE 4.96183
244 3V66 D3A 5
245 2WOR 2AN 5
246 1YP0 PEF 5.02092
247 5LGD PLM 5.02793
248 6CR2 LFV 5.03145
249 3MBG FAD 5.03597
250 5LWY OLA 5.04202
251 1S3G AP5 5.06912
252 4DOL PLM 5.06912
253 1YOK P6L 5.07812
254 1GHE ACO 5.08475
255 4QWT ACD 5.10563
256 2GBB CIT 5.12821
257 3WHB DCC 5.15464
258 1XON PIL 5.15759
259 1D6H COA 5.16796
260 5H62 UDP 5.17241
261 3UWB BB2 5.19481
262 5V13 JH3 5.20833
263 5WIU AQD 5.21327
264 3KMZ EQO 5.26316
265 4I6G FAD 5.27344
266 5G3Y ADP 5.30973
267 2Q0D ATP 5.38244
268 5A8E XTK 5.39683
269 2QZT PLM 5.40541
270 1XSE NDP 5.42373
271 3SDV 911 5.45775
272 5CYV WCA 5.47945
273 5F1R 42O 5.48523
274 2A1L PCW 5.55556
275 4AZJ SEP PLP 5.55556
276 2O1V ADP 5.6338
277 5W7B MYR 5.67376
278 1IID NHM 5.6872
279 5K13 6Q7 5.69106
280 4P3H 25G 5.69948
281 3NJQ NJQ 5.69948
282 5DUF G7A 5.70342
283 4X6F 3XU 5.71429
284 4ZGM 32M 5.7377
285 2BCG GER 5.82524
286 2HI4 BHF 5.85859
287 4K49 HFQ 5.88235
288 4EI7 GDP 5.9126
289 4BNU 9KQ 5.94796
290 1G27 BB1 5.95238
291 1DKF OLA 5.95745
292 4RW3 TDA 5.96026
293 4RW3 PLM 5.96026
294 1JR8 FAD 5.98291
295 3V49 PK0 6.01504
296 3BF1 ADP 6.0241
297 4IY7 KOU 6.04534
298 4IYO 0JO 6.04534
299 4XDA ADP 6.14887
300 6BJ3 ILE PRO LEU THR GLU GLU ALA GLU LEU 6.19835
301 4XT8 TMQ 6.20155
302 1M2Z DEX 6.22568
303 2AX9 BHM 6.25
304 3BQD DAY 6.27451
305 4P6X HCY 6.27451
306 4MNS 2AX 6.28931
307 6CD1 PLS 6.37363
308 6CD1 PLG 6.37363
309 5Y79 3PG 6.38298
310 1ATL 0QI 6.43564
311 5X5M 7YU 6.48148
312 3EE4 MYR 6.50155
313 5EYP LOC 6.50888
314 1P6D 3PC 6.53061
315 3SCM LGN 6.53061
316 5EY0 GTP 6.56934
317 4JE7 BB2 6.59898
318 3G08 FEE 6.66667
319 3SFI 3SF 6.77966
320 1Q1Y BB2 6.80628
321 2BIF BOG 6.82303
322 3WCA FPS 6.84932
323 3TL1 JRO 6.91824
324 1ZGA HMK 7.0028
325 3QMK SGN IDS SGN IDS 7.00935
326 1T27 PCW 7.01107
327 5CX6 CDP 7.04225
328 1LQY BB2 7.06522
329 1YBU APC 7.06522
330 5A4W QCT 7.07547
331 2UXI G50 7.14286
332 1VG0 GER 7.24638
333 5XNA SHV 7.24638
334 4OIC A8S 7.24638
335 4LA7 A1O 7.25389
336 5MTE BB2 7.29927
337 2XFH CL6 7.29927
338 3AQT RCO 7.34694
339 3F10 8HG 7.53425
340 6BR8 6OU 7.53968
341 1BGQ RDC 7.55556
342 3ET1 ET1 7.56014
343 4CVZ TYR GLU LEU ASP GLU LYS PHE ASP ARG LEU 7.59878
344 1PZO CBT 7.60456
345 1K7L 544 7.63889
346 6CAY ERG 7.69231
347 3KXC PLM 7.73196
348 3VVY ET 7.73196
349 1BWO LPC 7.77778
350 1S17 GNR 7.77778
351 5FI3 NAP 7.84314
352 3ZQE DXC 7.86885
353 3KDU NKS 7.94224
354 1DTL BEP 8.07453
355 4NE2 SH2 8.08383
356 3QUZ QUV 8.09859
357 2J1P GRG 8.19113
358 3FEI CTM 8.2397
359 5G57 6M5 8.27465
360 5NI5 8YB 8.33333
361 4JHG ZEA 8.33333
362 3AI3 SOE 8.36502
363 4ELG 52J 8.43373
364 5KAU RHQ 8.48485
365 3WBG 2AN 8.49673
366 2WDQ CBE 8.52713
367 2EV1 OLA 8.55856
368 4XIZ LPP 8.57143
369 5WL1 D3D 8.66667
370 5WL1 CUY 8.66667
371 4NKW PLO 8.70445
372 2HJ3 FAD 8.8
373 5JF2 SF7 8.82353
374 4K90 MLA 8.83721
375 4TMK T5A 8.92019
376 1N8V BDD 8.92857
377 4COL DTP 8.97887
378 6ESN BWE 8.98876
379 2QM9 TDZ 9.03226
380 4UNR QZE 9.04762
381 5LXT 7AK 9.09091
382 5LXT GDP 9.09091
383 1NU4 MLA 9.27835
384 4UA3 COA 9.27835
385 5NTW 98N 9.33852
386 3GWL FAD 9.43396
387 5BQI GSH 9.74026
388 5BQI 4UL 9.74026
389 4LZJ 22H 9.90099
390 6AYH C3G 9.95025
391 5C9J STE 9.96441
392 5C9J DAO 9.96441
393 5NTP 98E 10.084
394 3L9R L9R 10.2041
395 3L9R L9Q 10.2041
396 4I90 CHT 10.231
397 4RKK GLC GLC GLC GLC GLC GLC 10.241
398 4RC8 STE 10.3604
399 1PVN MZP 10.3723
400 4IS0 1R4 10.3734
401 3PMD 11A 10.4575
402 5OCA 9QZ 10.5042
403 3KPX CZH 10.6061
404 4YSX E23 10.6383
405 2NNQ T4B 10.687
406 5TVI MYR 10.8696
407 4RLT FSE 10.8844
408 4QVX 3CQ 11.3772
409 2FP2 TSA 11.4458
410 5N8V KZZ 11.5942
411 5C1M 4VO 12
412 5C1M CLR 12
413 3N7S 3N7 12.1739
414 3RUG DB6 12.2549
415 4G6I RS3 12.381
416 4M4Q 21A 12.4481
417 3JRS A8S 12.5
418 4OMJ 2TX 12.5899
419 5HGR 45D 12.9231
420 1HFS L04 13.125
421 5CHR 4NC 13.1387
422 2FKW RG1 13.2075
423 3S0E EOL 13.4454
424 4I67 G G G RPC 13.7931
425 3HUJ AGH 13.8211
426 3WYJ H78 14.2292
427 4V1T ADP 15.625
428 3RET PYR 15.8416
429 3RET SAL 15.8416
430 1XVB BHL 15.8824
431 1XVB 3BR 15.8824
432 5D9J 0N8 16.5775
433 5UR6 8KM 17.6796
434 4WVO 3UZ 17.6796
435 5LJ0 6XX 17.6923
436 2IBZ UQ6 18.1818
437 6FS0 E4W 18.239
438 4OGQ 3WM 19.3548
439 4OGQ 7PH 19.3548
440 1L6O SER LEU LYS LEU MET THR THR VAL 20
441 2Y69 CHD 20.6349
442 4HBM 0Y7 20.8333
443 2PEH LYS ARG LYS SER ARG TRP ASP GLU THR PRO 20.9524
444 1OQC FAD 26.4
445 5W97 CHD 27.6596
446 5Z84 CHD 27.6596
447 2DYS TGL 27.6596
448 2DYR PGV 27.6596
449 2DYR TGL 27.6596
450 5ZCO CHD 27.6596
451 5Z84 TGL 27.6596
452 2DYS PGV 27.6596
453 5ZCO PGV 27.6596
454 5Z84 PGV 27.6596
455 5ZCO TGL 27.6596
456 5ZCO PEK 27.6596
457 2ZFZ ARG 29.1139
458 3RMK BML 36.1446
Pocket No.: 2; Query (leader) PDB : 1ZPD; Ligand: DPX; Similar sites found with APoc: 168
This union binding pocket(no: 2) in the query (biounit: 1zpd.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 5A3Y VAL LYS 1.09489
2 4ARU TLA 1.21065
3 5ESO ISC 1.23239
4 5ESO TDP 1.23239
5 2H92 C5P 1.36986
6 3KLL MAL 1.40845
7 4WBD CIT 1.47874
8 4WBD ADP 1.47874
9 5OD2 GLC 1.52838
10 5ZI9 FLC 1.53846
11 1R9J TPP 1.58451
12 4CIB 7UZ 1.75824
13 4E03 ADP 1.94175
14 5B0I BOG 2.04082
15 5T96 79J 2.04678
16 5C9P FUC 2.09974
17 1KSK URA 2.13675
18 3CTL S6P 2.1645
19 1QS0 TDP 2.2113
20 2BO4 FLC 2.267
21 5XDR ADP 2.28873
22 3T3Z 9PL 2.31092
23 1IZC PYR 2.35988
24 1HZP DAO 2.38806
25 4D86 ADP 2.40964
26 3U7Q HCA 2.43902
27 3IR1 MET 2.44898
28 4M5P MLA 2.457
29 6FXR UDP 2.46479
30 1TJY PAV 2.46479
31 4AF0 MOA 2.51799
32 4M00 SUC 2.5878
33 2IYA UDP 2.59434
34 5ND5 TPP 2.64085
35 2J4D MHF 2.64085
36 4L9Z OXL 2.65487
37 3OTH TYD 2.6699
38 1USI PHE 2.89017
39 2C42 PYR 2.99296
40 2C42 TPP 2.99296
41 5E5U MLI 3.01508
42 3OID TCL 3.10078
43 5B48 TDN 3.27869
44 4U00 ADP 3.27869
45 3RK0 AMP 3.37553
46 1P4V GLY 3.38983
47 5MB4 NAG 3.49127
48 5MB4 NDG 3.49127
49 4UP4 GAL NAG 3.49127
50 6DAW ARG 3.50877
51 6F5W KG1 3.52304
52 6GL0 GLC BGC BGC 3.62538
53 1ITZ TPP 3.69718
54 1TKB N1T 3.69718
55 1PFK ADP 3.75
56 3I7S PYR 3.76712
57 4E3Q PMP 3.8055
58 3W9F I3P 3.84615
59 6C0B MLI 3.84615
60 3K6V CIT 3.9548
61 4PPF FLC 4
62 2HPL ASP ASP LEU TYR GLY 4
63 5WHU SIA 4.02685
64 5WHU SIA GAL GLC 4.02685
65 2OG2 MLI 4.0493
66 2YIC TPP 4.0493
67 1A99 PUT 4.06977
68 4LJ9 ACP 4.12979
69 3T95 PAV 4.1791
70 6AC9 ANP 4.22535
71 1C1D PHE 4.22535
72 4D52 GXL 4.22535
73 4BIX ADP 4.36242
74 4FCW ADP 4.50161
75 5JDC 6JP 4.51389
76 2R5N R5P 4.57746
77 2R5N RP5 4.57746
78 2R5N TPP 4.57746
79 1UMD TDP COI 4.62963
80 3HWW AKG 4.67626
81 3EXH TPP 4.71204
82 3HY2 ATP 4.85437
83 5NM7 GLY 4.88722
84 2OZL TPP 4.93151
85 1EC9 XYH 4.93274
86 3AI7 TPP 5.10563
87 1RP7 TZD 5.10563
88 2VAR AMP 5.10563
89 1RE8 BD2 5.14286
90 3AJM 4IP 5.16432
91 1UPA TPP 5.28169
92 2IHT TPP 5.28169
93 5M0T AKG 5.44218
94 2IHU TP9 5.45775
95 1V5F FAD 5.45775
96 1V5F TPP 5.45775
97 1OLS TDP 5.55556
98 4CCO OGA 5.56745
99 2QV7 ADP 5.63798
100 3W6X HZP 5.67686
101 3QH2 3NM 5.88235
102 1KNY APC 5.92885
103 2IRY DGT 5.94059
104 5EXE 5SR 6.03175
105 1G8S MET 6.08696
106 6BND OPE 6.10465
107 3DVA TPW 6.15385
108 5W6Y TRP 6.64557
109 2O66 FLC 6.66667
110 1JI0 ATP 6.66667
111 2BIF SIN 6.82303
112 5FJJ MAN 7.21831
113 2OG7 AHB 7.28291
114 2DPM SAM 7.39437
115 3B9Q MLI 7.61589
116 3KC1 2T6 7.71513
117 2O1S TDP 7.74648
118 5X2N ALA 7.8341
119 5B47 TPP 8.22368
120 5B47 PYR 8.22368
121 1GXS DKA 8.22785
122 6E8I PTR 8.28402
123 5J6Y BGC 8.51064
124 5J6Y GLC 8.51064
125 4PYA 2X3 8.69565
126 4KGD FAD 8.97887
127 4KGD TDP 8.97887
128 4JEJ 1GP 9.01639
129 5URY PAM 9.58904
130 1G6H ADP 9.72763
131 5GLN XYP XYP XYP 9.88372
132 1W85 TDP 10.2041
133 1ZX5 LFR 10.3333
134 2X7J TPP 10.5634
135 2J9D ADP 10.9244
136 3P13 RIP 11.1111
137 4NTO 1PW 11.5942
138 3KIH GDL 12.3711
139 3LL5 IP8 12.4498
140 5EOO CIT 13.2075
141 3I6B KDO 14.4444
142 1OZH HE3 14.6643
143 4RJK TPP 15.1408
144 4RJK TDL 15.1408
145 1LTT GAL BGC 17.0732
146 1V1A KDG 17.4757
147 5OCQ CIT 17.8947
148 2C31 TZD 34.1549
149 2C31 ADP 34.1549
150 2Q28 TPP 35.5634
151 3FSJ D7K 38.3803
152 2UZ1 TPP 38.7324
153 3IAE D7K 38.7324
154 4D5G TPP 39.6127
155 4D5G FAD 39.6127
156 6DEN TP9 40.669
157 6DEN G8A 40.669
158 6DEN FAD 40.669
159 1T9D P22 41.0211
160 5WKC AUJ 41.0211
161 5WKC TP9 41.0211
162 1YBH P22 41.0211
163 1T9D PYD 41.0211
164 1T9D P25 41.0211
165 1T9D FAD 41.0211
166 1T9D 1MM 41.0211
167 3EYA TDP 41.9014
168 2NXW TPP 44.4248
Pocket No.: 3; Query (leader) PDB : 1ZPD; Ligand: DPX; Similar sites found with APoc: 25
This union binding pocket(no: 3) in the query (biounit: 1zpd.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 4TVD BGC 1.40845
2 2GMH FAD 1.58451
3 5WZE PRO 1.99115
4 3PNQ 2HA 2.2409
5 2ZWI C5P 2.68097
6 4IJ6 SEP 3.79147
7 5DQY BEZ 3.80952
8 1H74 ILE 4.39189
9 3AI8 HNQ 4.6875
10 2OI2 DP6 4.79452
11 1TD2 PXL 4.87805
12 4Y7U 491 5.19481
13 4JUI EGR 5.53191
14 2B3B GLC 5.75
15 3AXB PRO 5.80357
16 3AXB FAD 5.80357
17 1V3S ATP 6.03448
18 4XDA RIB 6.14887
19 2WR9 MAN MAN 7.03125
20 4ZOH FAD 7.14286
21 4JP3 CIT 8.78661
22 3NOJ PYR 9.2437
23 2Y5S 78H 11.5646
24 1YRO UDP 15.035
25 5LY1 PPI 28.5714
Pocket No.: 4; Query (leader) PDB : 1ZPD; Ligand: CIT; Similar sites found with APoc: 28
This union binding pocket(no: 4) in the query (biounit: 1zpd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV None
2 1HBK COA None
3 5UI2 EQ3 1.89274
4 3LLI FAD 1.91571
5 3IHG FAD 2.42991
6 3GZ9 D32 2.60223
7 5KOD IAC 2.8169
8 3MDV CL6 2.85088
9 4M8E 29V 3.0303
10 1YKF NAP 3.125
11 2E9L BGC 3.19829
12 1VHT BA3 3.21101
13 1N46 PFA 3.87597
14 1UNB AKG 4.18006
15 1UNB PN1 4.18006
16 3D78 NBB 4.20168
17 1KZN CBN 4.39024
18 2OZ5 7XY 4.39189
19 5B2E MQG 4.41176
20 6ET8 BWH 4.95496
21 2VAR ANP 5.10563
22 6BR9 PGV 5.29248
23 1FK5 OLA 6.45161
24 1F7L COA 6.61157
25 6BR8 PGV 7.53968
26 5APK 76E 9.0566
27 4WPF 3SN 9.09091
28 1N83 CLR 9.62963
Pocket No.: 5; Query (leader) PDB : 1ZPD; Ligand: DPX; Similar sites found with APoc: 46
This union binding pocket(no: 5) in the query (biounit: 1zpd.bio1) has 30 residues
No: Leader PDB Ligand Sequence Similarity
1 2ACV UDP 1.2959
2 5UY8 AMZ 1.58451
3 4G86 BNT 1.76056
4 5TXR PLP 1.83299
5 2J5V PCA 1.90736
6 1RRV TYD 1.92308
7 6EYT UDP 2.14067
8 1H5R G1P 2.38908
9 1NE7 16G 2.42215
10 1YQT ADP 2.60223
11 5YV5 ADP 2.61194
12 5OSW DIU 2.64085
13 4A1O JLN 2.67686
14 2Q8M AMP 2.71084
15 3CQO FUC 2.73038
16 3WUR O4B 2.92398
17 2DPY ADP 2.96804
18 2EFX NFA 3.0303
19 4HE2 AMP 3.16901
20 5GQI CTP 3.23887
21 5OM2 DXT 3.25203
22 4UP4 NAG 3.49127
23 4UP4 NDG 3.49127
24 5EVY FAD 3.65297
25 5TPC GAL SIA NGA GAL SIA 3.76471
26 1DCP HBI 3.84615
27 2BDG PBZ 4.03587
28 3ITJ CIT 4.14201
29 5K6A 6QT 4.51389
30 5JDI 6JO 4.51389
31 1WYV PLP AOA 4.64135
32 2PZE ATP 5.24017
33 4P5E N6P 5.26316
34 3ZO7 K6H 5.31915
35 3T6E UQ9 5.42636
36 3B5J 12D 5.76132
37 6CUZ FEV 6.4433
38 4NV0 MG7 8.46395
39 2D5X L35 10.9589
40 2JDU MFU 15.6522
41 3IT6 ORN 16.5854
42 4OGQ 7PH 19.3548
43 3VPB GLU 19.6429
44 2QQC AG2 22.3214
45 4WZ6 ATP 22.4138
46 3RMK BML 36.1446
Pocket No.: 6; Query (leader) PDB : 1ZPD; Ligand: CIT; Similar sites found with APoc: 50
This union binding pocket(no: 6) in the query (biounit: 1zpd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 5ABH YWN 1.23239
2 6AU6 GDP 1.85676
3 6BA2 7KM 2.0339
4 4B7P 9UN 2.17391
5 3R9C ECL 2.39234
6 4AVB ACO 2.4024
7 5UNJ RJW 2.44898
8 1M13 HYF 2.53165
9 3ETG NDP 2.79441
10 3LDW ZOL 3.28283
11 3QKD HI0 3.31492
12 3FAL REA 3.38346
13 4U63 FAD 3.61446
14 3T03 3T0 3.87324
15 1BUC CAA 3.91645
16 2E3N 6CM 3.92157
17 4Q5M ROC 3.94089
18 4HA9 NDP 4.01606
19 5TWO 7MV 4.04412
20 5JO1 6LM 4.32432
21 4KIB SAH 4.48179
22 4X28 FDA 4.55764
23 2JLR ANP 4.65632
24 5C2H 4PX 4.69613
25 3VRV YSD 4.79705
26 4E1M TQ2 4.81928
27 2PX8 MGT 4.83271
28 1RX0 2MC 4.83461
29 1I0B PEL 4.92958
30 3F8K COA 5
31 4K26 NDP 5.43478
32 4K26 SFF 5.43478
33 1H12 XYP 5.67901
34 1H12 XYS 5.67901
35 1LSS NAD 5.71429
36 3WXB NDP 6.09319
37 3RWP ABQ 6.10932
38 4WO4 JLS 6.93431
39 5N2D 8J8 6.94444
40 1W4R TTP 7.17949
41 5FQK 6NT 7.80669
42 3GWN FAD 7.89474
43 1JGS SAL 7.97101
44 1POC GEL 8.20895
45 3PVT 3HC 8.49421
46 4LPG 1MV 9.33333
47 3EWK FAD 11.0132
48 3FB4 AP5 12.5
49 1TU3 GNP 18.9873
50 4RPO T6C 21.5247
Pocket No.: 7; Query (leader) PDB : 1ZPD; Ligand: DPX; Similar sites found with APoc: 19
This union binding pocket(no: 7) in the query (biounit: 1zpd.bio1) has 29 residues
No: Leader PDB Ligand Sequence Similarity
1 4TQK NAG 1.72414
2 4M5P 23W 2.457
3 5E70 RCD 2.64085
4 3ZDS OMD 2.77136
5 2I6U CP 2.9316
6 2P9H IPT 3.34572
7 3CYI ATP 3.63636
8 1WW5 SGA BGC 3.75
9 1DNP MHF 4.24628
10 2HIM ASN 4.46927
11 3JQ9 AX1 4.51389
12 4P83 U5P 4.94506
13 3BGD PM6 5
14 3ZIA ADP 6.47059
15 3EHH ADP 8.25688
16 1JJ7 ADP 8.46154
17 4G2R H1L 9.51374
18 3KO0 TFP 12.8713
19 2ZFZ ARG 29.1139
Pocket No.: 8; Query (leader) PDB : 1ZPD; Ligand: CIT; Similar sites found with APoc: 8
This union binding pocket(no: 8) in the query (biounit: 1zpd.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
1 2X5F PLP 2.09302
2 3G5N PB2 2.94118
3 6BMM OLB 6.48464
4 4XPL ACO 7.36196
5 2HFN FMN 10.4575
6 2CNT COA 13.125
7 2CJF RP4 13.3758
8 2QO4 CHD 27.7778
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