Receptor
PDB id Resolution Class Description Source Keywords
1Z82 2 Å EC: 1.1.1.8 CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE (TM0 THERMOTOGA MARITIMA AT 2.00 A RESOLUTION THERMOTOGA MARITIMA TM0378 GLYCEROL-3-PHOSPHATE DEHYDROGENASE STRUCTURAL GENOMJOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTEIN STRUCTUINITIATIVE PSI OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGE (TM0378) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUT TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
G3H A:600;
Valid;
none;
submit data
170.058 C3 H7 O6 P C([C@...
G3P B:600;
Valid;
none;
submit data
172.074 C3 H9 O6 P C([C@...
MPD A:602;
A:603;
A:604;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
MRD A:601;
B:601;
B:602;
B:603;
B:604;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@H...
NDP A:500;
B:500;
Valid;
Valid;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1Z82 2 Å EC: 1.1.1.8 CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGENASE (TM0 THERMOTOGA MARITIMA AT 2.00 A RESOLUTION THERMOTOGA MARITIMA TM0378 GLYCEROL-3-PHOSPHATE DEHYDROGENASE STRUCTURAL GENOMJOINT CENTER FOR STRUCTURAL GENOMICS JCSG PROTEIN STRUCTUINITIATIVE PSI OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF GLYCEROL-3-PHOSPHATE DEHYDROGE (TM0378) FROM THERMOTOGA MARITIMA AT 2.00 A RESOLUT TO BE PUBLISHED
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1Z82 - G3P C3 H9 O6 P C([C@H](CO....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1Z82 - G3P C3 H9 O6 P C([C@H](CO....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1Z82 - G3P C3 H9 O6 P C([C@H](CO....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: G3H; Similar ligands found: 10
No: Ligand ECFP6 Tc MDL keys Tc
1 G3H 1 1
2 E4P 0.515152 0.967742
3 R5P 0.459459 0.909091
4 R52 0.459459 0.909091
5 HG3 0.451613 0.875
6 G3P 0.4375 0.848485
7 1GP 0.4375 0.848485
8 G6Q 0.435897 0.909091
9 M2P 0.424242 0.852941
10 3PG 0.411765 0.9375
Ligand no: 2; Ligand: G3P; Similar ligands found: 25
No: Ligand ECFP6 Tc MDL keys Tc
1 1GP 1 1
2 G3P 1 1
3 GP9 0.551724 0.90625
4 GPE 0.514286 0.731707
5 M2P 0.5 0.882353
6 LX1 0.484848 0.828571
7 A5P 0.484848 0.911765
8 DX5 0.484848 0.911765
9 LXP 0.484848 0.911765
10 HG3 0.482759 0.90625
11 S6P 0.470588 0.939394
12 DXP 0.457143 0.828571
13 G3H 0.4375 0.848485
14 3PG 0.4375 0.852941
15 D5X 0.432432 0.805556
16 CH5 0.425 0.6
17 EFS 0.423077 0.69697
18 M6R 0.421053 0.756098
19 AGP 0.421053 0.756098
20 GSE 0.414634 0.714286
21 E4P 0.411765 0.878788
22 R5P 0.405405 0.828571
23 DG6 0.405405 0.885714
24 TX4 0.405405 0.630435
25 R52 0.405405 0.828571
Ligand no: 3; Ligand: NDP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 DG1 0.68 1
8 1DG 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 2AM 0.529412 0.87013
23 6V0 0.519685 0.974026
24 NAP 0.514493 0.922078
25 EAD 0.507143 0.949367
26 A2D 0.504673 0.921053
27 TXE 0.503876 0.935897
28 NA0 0.496454 0.910256
29 TXD 0.496124 0.911392
30 SAP 0.495575 0.875
31 AGS 0.495575 0.875
32 P1H 0.493056 0.925926
33 CO7 0.489796 0.791209
34 TAP 0.489362 0.864198
35 PAP 0.482456 0.907895
36 BA3 0.481818 0.921053
37 NAJ PZO 0.478261 0.924051
38 ATP 0.477876 0.921053
39 B4P 0.477477 0.921053
40 ADP 0.477477 0.921053
41 AP5 0.477477 0.921053
42 OAD 0.47541 0.897436
43 5FA 0.473684 0.921053
44 AR6 0.473684 0.896104
45 APR 0.473684 0.896104
46 AQP 0.473684 0.921053
47 AN2 0.473214 0.909091
48 3OD 0.467742 0.897436
49 50T 0.464912 0.884615
50 PO4 PO4 A A A A PO4 0.463415 0.857143
51 V3L 0.461538 0.896104
52 2A5 0.46087 0.85
53 A1R 0.459016 0.841463
54 ADQ 0.459016 0.897436
55 4AD 0.459016 0.875
56 OVE 0.458716 0.8375
57 OMR 0.458647 0.813953
58 PPS 0.457627 0.811765
59 AD9 0.456897 0.897436
60 CA0 0.45614 0.897436
61 M33 0.45614 0.884615
62 ADJ 0.455882 0.879518
63 A3P 0.455357 0.894737
64 ACP 0.452174 0.897436
65 ENP 0.451613 0.85
66 UP5 0.451128 0.948052
67 SRP 0.45 0.8625
68 ANP 0.449153 0.897436
69 ACQ 0.449153 0.897436
70 PRX 0.448276 0.82716
71 5AL 0.445378 0.884615
72 7D4 0.443478 0.8375
73 ADX 0.443478 0.811765
74 AMP 0.436364 0.894737
75 A 0.436364 0.894737
76 4TC 0.433824 0.924051
77 7D3 0.433628 0.8375
78 ETB 0.433566 0.797753
79 DCA 0.433566 0.788889
80 1ZZ 0.433071 0.802326
81 BIS 0.433071 0.864198
82 00A 0.432 0.864198
83 ATF 0.429752 0.886076
84 0T1 0.427586 0.788889
85 5SV 0.427419 0.788235
86 8QN 0.427419 0.884615
87 3AM 0.427273 0.857143
88 N01 0.426573 0.884615
89 PR8 0.425197 0.811765
90 WAQ 0.425197 0.841463
91 LAD 0.425197 0.821429
92 DTP 0.425 0.8375
93 AMO 0.424 0.886076
94 PAJ 0.424 0.843373
95 APC 0.423729 0.886076
96 UPA 0.423358 0.935897
97 48N 0.422222 0.853659
98 FYA 0.421875 0.860759
99 PTJ 0.421875 0.853659
100 CNA 0.421429 0.910256
101 PUA 0.42069 0.9125
102 NXX 0.419118 0.910256
103 DND 0.419118 0.910256
104 AV2 0.418033 0.848101
105 COA 0.417808 0.788889
106 3UK 0.417323 0.897436
107 OOB 0.416 0.909091
108 IVC 0.415584 0.78022
109 DAT 0.415254 0.8375
110 NDO 0.414966 0.897436
111 139 0.414286 0.901235
112 3AT 0.413223 0.896104
113 TAT 0.413223 0.886076
114 YLB 0.413043 0.784091
115 62F 0.4125 0.823529
116 ABM 0.412281 0.848101
117 YAP 0.412214 0.875
118 YLP 0.411765 0.784091
119 ME8 0.410853 0.802326
120 NB8 0.410853 0.853659
121 SON 0.410256 0.886076
122 DLL 0.409449 0.909091
123 AHX 0.409449 0.853659
124 COS 0.409396 0.771739
125 AMX 0.409396 0.797753
126 CAO 0.409396 0.763441
127 30N 0.409396 0.72449
128 7D5 0.409091 0.8125
129 4UW 0.408759 0.9125
130 APX 0.407692 0.841463
131 SRA 0.40708 0.85
132 CMX 0.406667 0.788889
133 SCO 0.406667 0.788889
134 TYM 0.405797 0.886076
135 COD 0.405594 0.777778
136 OXK 0.405229 0.771739
137 CA6 0.405229 0.70297
138 A12 0.405172 0.886076
139 AP2 0.405172 0.886076
140 9SN 0.40458 0.853659
141 LAQ 0.404412 0.802326
142 T5A 0.404255 0.914634
143 FAM 0.403974 0.771739
144 ACO 0.403974 0.763441
145 FCX 0.403974 0.763441
146 AMP MG 0.403509 0.825
147 VO4 ADP 0.403226 0.860759
148 ADP VO4 0.403226 0.860759
149 YLC 0.402878 0.823529
150 1VU 0.402597 0.763441
151 FA5 0.401515 0.886076
152 HAX 0.401316 0.771739
153 APU 0.4 0.923077
154 TXA 0.4 0.886076
155 A U 0.4 0.898734
156 4UU 0.4 0.948052
157 AFH 0.4 0.843373
158 CAJ 0.4 0.771739
159 AR6 AR6 0.4 0.871795
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1Z82; Ligand: NDP; Similar sites found: 399
This union binding pocket(no: 1) in the query (biounit: 1z82.bio1) has 29 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2AHR NAP 0.001648 0.41745 None
2 4BVA NDP 0.003001 0.40865 0.895522
3 4BVA T3 0.006075 0.40465 0.895522
4 1XKQ NDP 0.001247 0.42627 1.07143
5 2I3G NAP 0.0003883 0.44339 1.19403
6 5H81 NAP 0.0001591 0.43286 1.19403
7 1RYI FAD 0.005955 0.408 1.19403
8 1PJS NAD 0.0002464 0.40585 1.19403
9 2WET FAD 0.003292 0.4185 1.49254
10 1PL6 572 0.003092 0.40944 1.49254
11 1PL6 NAD 0.001256 0.40032 1.49254
12 2CVZ NDP 0.00001004 0.49558 1.7301
13 2GSD NAD 0.001006 0.43252 1.79104
14 5FI3 NAP 0.001378 0.42048 1.79104
15 2FR1 NDP 0.001843 0.41828 1.79104
16 4XQC 13D 0.006821 0.40837 1.79104
17 4XB2 HSE 0.00334 0.40812 1.79104
18 4XB2 NDP 0.001194 0.40558 1.79104
19 3V1Y NAD 0.002352 0.40501 1.79104
20 4XQC NAD 0.007956 0.40472 1.79104
21 1I2B NAD 0.0147 0.40158 1.79104
22 1JQN DCO 0.0257 0.40022 1.79104
23 3OZ2 FAD 0.008783 0.40016 1.79104
24 4ZVV NAD 0.0006015 0.46346 1.80723
25 4ZVV GN0 0.0006015 0.46346 1.80723
26 1F06 2NP 0.001225 0.42786 1.875
27 1F06 NDP 0.001225 0.42786 1.875
28 5G3U ITW 0.001845 0.43173 2.08955
29 5G3U FDA 0.00133 0.43123 2.08955
30 3AYI FAD 0.005458 0.41824 2.08955
31 3AYI HCI 0.005695 0.41824 2.08955
32 1RM4 NDP 0.002667 0.40647 2.08955
33 1GET NAP 0.01889 0.4045 2.08955
34 1GOJ ADP 0.03617 0.40321 2.08955
35 1GET FAD 0.01984 0.40242 2.08955
36 3AXB FAD 0.007004 0.40112 2.08955
37 3AXB PRO 0.009294 0.40104 2.08955
38 1P0F NAP 0.0002772 0.4506 2.14477
39 4ITU 1HS 0.003357 0.41914 2.23048
40 4ITU NAI 0.002153 0.4169 2.23048
41 5M67 3D1 0.0001487 0.48089 2.38806
42 5M67 ADE 0.0001514 0.48056 2.38806
43 5M67 NAD 0.0001557 0.48005 2.38806
44 4OOE FOM 0.006107 0.42936 2.38806
45 4OOE NDP 0.006107 0.42936 2.38806
46 4MP8 NAD 0.001539 0.42755 2.38806
47 4BJZ P3A 0.006532 0.42577 2.38806
48 2Y6Q FAD 0.001429 0.42262 2.38806
49 2Y6Q I7T 0.003403 0.42262 2.38806
50 1MO9 KPC 0.009797 0.42246 2.38806
51 1MO9 FAD 0.009911 0.42172 2.38806
52 3UCL NAP 0.007905 0.42097 2.38806
53 2ZB4 5OP 0.004385 0.41036 2.38806
54 2ZB4 NAP 0.004124 0.41036 2.38806
55 4AP3 NAP 0.01349 0.40657 2.38806
56 4AP3 FAD 0.01349 0.40657 2.38806
57 3CIF NAD 0.003173 0.40499 2.38806
58 3UCL FAD 0.01937 0.40228 2.38806
59 3UCL CYH 0.01937 0.40228 2.38806
60 1WP4 NDP 0.000004326 0.51399 2.42215
61 2JAH NDP 0.004154 0.40312 2.42915
62 5JCA NDP 0.01686 0.40304 2.46479
63 3A4V NAD 0.006443 0.4015 2.52366
64 3A4V PYR 0.006443 0.4015 2.52366
65 2VOH CIT 0.01284 0.42237 2.54777
66 1FL2 FAD 0.00362 0.41478 2.58065
67 1I36 NAP 0.00006026 0.45029 2.65152
68 3Q3C NAD 0.002058 0.40182 2.67559
69 2ZJ1 NAD 0.0001005 0.48998 2.68657
70 2ZJ1 ARJ 0.0001942 0.47803 2.68657
71 1KEV NDP 0.0002277 0.45682 2.68657
72 2YG3 FAD 0.00118 0.43556 2.68657
73 5A04 NDP 0.003017 0.43142 2.68657
74 5A04 BGC 0.003677 0.43142 2.68657
75 4W6Z 8ID 0.002323 0.41923 2.68657
76 1PGP 6PG 0.002353 0.41901 2.68657
77 2AQJ TRP 0.006528 0.41868 2.68657
78 2AQJ FAD 0.006779 0.41868 2.68657
79 2XVE FAD 0.008196 0.41584 2.68657
80 2XVF FAD 0.003518 0.41313 2.68657
81 5HSA FAS 0.005837 0.40836 2.68657
82 5JCM FAD 0.01695 0.40419 2.68657
83 5JCM NAD 0.0175 0.40419 2.68657
84 5JCM ISD 0.0175 0.40419 2.68657
85 4L8V NAP 0.003886 0.40294 2.68657
86 5JY6 NAD 0.01329 0.40047 2.68657
87 2AE2 PTO 0.0076 0.40272 2.69231
88 2AE2 NAP 0.0076 0.40272 2.69231
89 1XHL NDP 0.00125 0.4249 2.6936
90 1I0Z NAI 0.000293 0.44665 2.7027
91 9LDB NAD 0.0001506 0.45948 2.71084
92 9LDT NAD 0.0001626 0.45817 2.71084
93 5ITV NAI 0.002241 0.41362 2.7451
94 5VKT NAP 0.00009597 0.46552 2.76243
95 4FWE FAD 0.002891 0.42276 2.76382
96 2Q46 NAP 0.0008968 0.41366 2.7668
97 2QZZ NAP 0.004081 0.41055 2.83019
98 2QZZ EMF 0.00434 0.41055 2.83019
99 5E4R NAP 0.0001859 0.45273 2.98507
100 2IXB A2G 0.000608 0.44492 2.98507
101 2IXB NAD 0.0005508 0.43746 2.98507
102 4XDZ NDP 0.0002732 0.43701 2.98507
103 1H2B NAJ 0.0006844 0.43655 2.98507
104 1E5Q NDP 0.0006263 0.4323 2.98507
105 2NAD NAD 0.00115 0.43021 2.98507
106 1SC6 NAD 0.001331 0.42383 2.98507
107 1GQ2 NAP 0.001327 0.41967 2.98507
108 5EOW FAD 0.002832 0.41343 2.98507
109 1PS9 FAD 0.004859 0.41161 2.98507
110 4J1Q NDP 0.002045 0.41092 2.98507
111 4JNA FAD 0.005552 0.4102 2.98507
112 5FJN FAD 0.005648 0.4099 2.98507
113 5FJN BE2 0.00658 0.4099 2.98507
114 1O6Z NAD 0.001477 0.40508 2.98507
115 3GFB NAD 0.003053 0.40421 2.98507
116 4B7X NAP 0.004694 0.40353 2.98507
117 2RGJ FAD 0.00505 0.40228 2.98507
118 1V35 NAI 0.007591 0.4037 3.03951
119 3F8D FAD 0.01558 0.40928 3.09598
120 4YAG NAI 0.008893 0.40183 3.11419
121 1E7S NAP 0.00525 0.40039 3.11526
122 4O1M NAD 0.002611 0.40967 3.1746
123 4GUS FAD 0.002268 0.42805 3.22581
124 4GUT FAD 0.003316 0.42309 3.22581
125 4HSU FAD 0.003666 0.41947 3.22581
126 1YQD NAP 0.0001088 0.46807 3.27869
127 4EDF UPG 0.0002032 0.47424 3.28358
128 3ULK NDP 0.00008025 0.44222 3.28358
129 1LLU NAD 0.0009402 0.43242 3.28358
130 5BVA FAD 0.002554 0.42592 3.28358
131 4KP7 NAP 0.005969 0.41337 3.28358
132 4KP7 1UQ 0.006714 0.40775 3.28358
133 1X7D ORN 0.004859 0.4075 3.28358
134 5KMS NAD 0.01255 0.40658 3.28358
135 3KB6 NAD 0.000706 0.42873 3.29341
136 1SOW NAD 0.0006443 0.43621 3.35366
137 3KLJ FAD 0.003815 0.40709 3.37662
138 5UAV TFB 0.00001733 0.50419 3.41615
139 5UAV NDP 0.00001733 0.50419 3.41615
140 1OMO NAD 0.001008 0.41193 3.41615
141 3B1F NAD 0.00003056 0.45819 3.44828
142 1NVT NAP 0.0007142 0.41816 3.48432
143 3E1T FAD 0.002737 0.42374 3.51562
144 1U3U NAD 0.00115 0.43814 3.58209
145 1U3U BNF 0.00115 0.43814 3.58209
146 3RC1 NAP 0.002177 0.4215 3.58209
147 2GZ3 NAP 0.004498 0.41933 3.58209
148 2DFV NAD 0.0027 0.40627 3.58209
149 5U8U FAD 0.01669 0.40509 3.58209
150 4OPC PGT 0.03906 0.40405 3.58209
151 4XYM COA 0.008366 0.40198 3.58209
152 3RC1 TLO 0.005508 0.40197 3.58209
153 4OPC FDA 0.03787 0.40196 3.58209
154 2NPX NAD 0.01611 0.40195 3.58209
155 3CMC NAD 0.01713 0.40519 3.59281
156 2BGM NAJ 0.002523 0.40438 3.59712
157 1CER NAD 0.002362 0.41131 3.62538
158 4O0L NDP 0.003653 0.40531 3.63636
159 3QV1 NAD 0.002584 0.40037 3.65854
160 2BD0 NAP 0.002586 0.41249 3.68852
161 4ZRN NAD 0.004722 0.40462 3.84615
162 4ZRN UPG 0.01294 0.40018 3.84615
163 4J4H 1J1 0.0009816 0.44495 3.861
164 4J4H NAI 0.0009816 0.44495 3.861
165 4JK3 NAD 0.0006594 0.42656 3.861
166 1NVM NAD 0.0003079 0.44733 3.8806
167 3I6I NDP 0.001833 0.42563 3.8806
168 2Z3Y F2N 0.002787 0.42341 3.8806
169 1V59 FAD 0.003569 0.42087 3.8806
170 1J0X NAD 0.004736 0.41397 3.8806
171 1CDO NAD 0.002275 0.40606 3.8806
172 1UDB NAD 0.01053 0.40548 3.8806
173 3WGT QSC 0.01134 0.40257 3.8806
174 3WGT FAD 0.01085 0.40257 3.8806
175 1HDO NAP 0.003798 0.40837 3.8835
176 2G5C NAD 0.00009833 0.46511 3.91459
177 3LZW FAD 0.00274 0.4186 3.91566
178 3LZW NAP 0.006556 0.4186 3.91566
179 1LDM NAD 0.0001959 0.45345 3.95137
180 4CQM NAP 0.004668 0.40114 4.09836
181 1BW9 NAD 0.000589 0.44907 4.1791
182 2VHW NAI 0.0004913 0.44619 4.1791
183 1BXG NAD 0.0004678 0.43217 4.1791
184 1C1X NAD 0.0006983 0.43207 4.1791
185 1CF2 NAP 0.0007013 0.42505 4.1791
186 2O4C NAD 0.001198 0.42426 4.1791
187 5MBX SP5 0.004458 0.42349 4.1791
188 5MBX FAD 0.004458 0.42349 4.1791
189 3LAD FAD 0.003882 0.41656 4.1791
190 4HXY NDP 0.002263 0.41345 4.1791
191 2RAB FAD 0.005979 0.41073 4.1791
192 2RAB NAD 0.01414 0.40881 4.1791
193 2A8X FAD 0.00689 0.40729 4.1791
194 1QO8 FAD 0.007062 0.40593 4.1791
195 3NYC IAR 0.01148 0.40391 4.1791
196 3NYC FAD 0.01148 0.40391 4.1791
197 4M52 FAD 0.008335 0.40298 4.1791
198 4D3F NAP 0.0000006919 0.51657 4.19355
199 1RP0 AHZ 0.001389 0.4231 4.22535
200 2HJR APR 0.0001563 0.43666 4.26829
201 1GY8 NAD 0.003289 0.40709 4.28212
202 1EZ4 NAD 0.0001559 0.45003 4.40252
203 2VVL FAD 0.006202 0.40729 4.44444
204 2VVM FAD 0.006441 0.40564 4.44444
205 3ABI NAD 0.000003342 0.52226 4.47761
206 4DPL NAP 0.0005263 0.43675 4.47761
207 3UOY NAP 0.003587 0.43522 4.47761
208 3UOY FAD 0.003587 0.43522 4.47761
209 1FEC FAD 0.003056 0.42455 4.47761
210 1UWK NAD 0.004452 0.41691 4.47761
211 1UWK URO 0.004452 0.41691 4.47761
212 4NTC FAD 0.004708 0.41217 4.47761
213 2CDC XYP 0.0145 0.40774 4.47761
214 4X9M FAD 0.00605 0.40675 4.47761
215 1GPE FAD 0.00795 0.4065 4.47761
216 1O94 ADP 0.001654 0.40341 4.47761
217 2CDC NAP 0.01991 0.40176 4.47761
218 2CDC XYS 0.01991 0.40176 4.47761
219 3WLE NAD 0.0008899 0.43588 4.69208
220 1D7O NAD 0.006586 0.40219 4.7138
221 1RYD NDP 0.0005155 0.4466 4.77612
222 1H6C SIN 0.0006347 0.44534 4.77612
223 1H6C NDP 0.0006224 0.44331 4.77612
224 2IVD FAD 0.002581 0.4174 4.77612
225 1YKJ FAD 0.009222 0.41496 4.77612
226 1YKJ PHB 0.009222 0.41496 4.77612
227 5T9F TYR 0.000005029 0.5272 4.79705
228 5T9F NAP 0.000007505 0.51871 4.79705
229 5T9E NAP 0.000004151 0.5102 4.79705
230 1NYT NAP 0.002266 0.40307 4.79705
231 5KKA 6V0 0.002736 0.41153 4.80769
232 3AB1 FAD 0.002888 0.41979 5
233 1O8B ABF 0.02584 0.40757 5.02283
234 2PV7 NAD 0.00003109 0.48099 5.03356
235 1SAY PYR 0.00327 0.41095 5.07463
236 2YVF NAD 0.01498 0.40525 5.07463
237 2YVF FAD 0.01579 0.40363 5.07463
238 1DXY NAD 0.0008078 0.42252 5.1051
239 5UAO FAD 0.003654 0.41356 5.1756
240 1HYH NAD 0.0002322 0.45213 5.17799
241 3HAD NAD 0.001574 0.4383 5.19481
242 2DT5 NAD 0.00009131 0.46469 5.21327
243 3NJ4 AFX 0.0008192 0.4843 5.37313
244 3NJ4 NAD 0.001283 0.47536 5.37313
245 1BZL FAD 0.008649 0.43065 5.37313
246 5WGR FAD 0.002171 0.42482 5.37313
247 1M2W NAD 0.002309 0.42076 5.37313
248 1LJ8 NAD 0.0007321 0.4121 5.37313
249 2R4J FAD 0.009079 0.40895 5.37313
250 2R4J 13P 0.009079 0.40895 5.37313
251 3LXD FAD 0.006082 0.4014 5.37313
252 2NU8 COA 0.00005413 0.46715 5.55556
253 3CTY FAD 0.01035 0.4009 5.64263
254 4E13 NAD 0.0001273 0.43045 5.65371
255 1KOL NAD 0.001872 0.42298 5.67164
256 4RQU NAD 0.001903 0.41359 5.67164
257 3ETG NDP 0.00805 0.41191 5.67164
258 3ETG GTP 0.00662 0.40891 5.67164
259 3ETG GLU 0.0138 0.40203 5.67164
260 1ZK7 FAD 0.01049 0.40152 5.78158
261 2HK9 NAP 0.001958 0.40828 5.81818
262 4K28 NAD 0.001675 0.40721 5.94796
263 3OJO NAD 0.0000668 0.45125 5.97015
264 5BUK FAD 0.001243 0.43877 5.97015
265 1YY5 FAD 0.002015 0.43016 5.97015
266 5MZI FYK 0.004825 0.42568 5.97015
267 1RSG FAD 0.00236 0.42539 5.97015
268 1REO FAD 0.002287 0.42284 5.97015
269 5MZI FAD 0.005603 0.4222 5.97015
270 3K7M FAD 0.007569 0.41304 5.97015
271 5GUD NDP 0.004508 0.41092 5.97015
272 1R6D NAD 0.01115 0.40593 5.97015
273 4K5S FAD 0.004282 0.40511 5.97015
274 4K5S PM0 0.009861 0.40511 5.97015
275 1R6D DAU 0.01207 0.40375 5.97015
276 1GAD NAD 0.001672 0.41054 6.06061
277 3AD8 PYC 0.01466 0.40812 6.06061
278 3AD8 FAD 0.01466 0.40812 6.06061
279 3AD8 NAD 0.004058 0.40724 6.06061
280 2EV9 SKM 0.003036 0.40975 6.08365
281 2EV9 NAP 0.003036 0.40975 6.08365
282 2Q7V FAD 0.002596 0.4227 6.15385
283 3FG2 FAD 0.003797 0.40717 6.18812
284 2A92 NAI 0.001491 0.4219 6.23053
285 1MV8 NAD 0.00001862 0.48484 6.26866
286 1MUU NAD 0.00002292 0.47655 6.26866
287 1H82 FAD 0.0008879 0.45386 6.26866
288 1H82 GZZ 0.001098 0.45386 6.26866
289 4TXI FAD 0.0009343 0.42987 6.26866
290 2BRY FAD 0.001197 0.42698 6.26866
291 2WPF FAD 0.01297 0.42227 6.26866
292 2WPF WPF 0.01461 0.42123 6.26866
293 1R37 NAD 0.006009 0.40047 6.26866
294 1D1T NAD 0.0009562 0.42948 6.43432
295 1DLJ UGA 0.0000292 0.51135 6.56716
296 1DLJ NAI 0.0000318 0.5098 6.56716
297 2GN4 UD1 0.009979 0.43085 6.56716
298 2GN4 NDP 0.009841 0.42987 6.56716
299 3T31 FAD 0.00329 0.42906 6.56716
300 3T31 DCQ 0.003575 0.42906 6.56716
301 1ZH8 NAP 0.001027 0.42246 6.56716
302 1EK6 NAI 0.006371 0.41619 6.56716
303 3VZS NAP 0.01012 0.4013 6.61479
304 3VZS CAA 0.0204 0.4013 6.61479
305 4J36 1HR 0.003247 0.4207 6.74699
306 4J36 FAD 0.001821 0.41977 6.74699
307 1ZEM NAD 0.001611 0.4116 6.87023
308 4PLG NAI 0.0007228 0.44071 6.88623
309 3QFA FAD 0.00791 0.40391 6.89655
310 1PZG A3D 0.0007718 0.43957 6.94864
311 2GCG NDP 0.001668 0.41582 6.9697
312 3ZV6 NAD 0.007904 0.40299 7.11744
313 3ZV6 4HB 0.008331 0.40299 7.11744
314 1JNR FAD 0.004766 0.4335 7.16418
315 1QMG APX 0.0004208 0.42223 7.16418
316 1ZMD FAD 0.004313 0.41564 7.16418
317 2HQM FAD 0.005394 0.41072 7.16418
318 3GD4 NAD 0.009637 0.4201 7.2407
319 5JE8 NAD 0.00003227 0.48864 7.28477
320 1T26 NAI 0.00076 0.44548 7.45342
321 4E5N NAD 0.001201 0.42421 7.46269
322 2DM6 IMN 0.008297 0.40019 7.50751
323 1YKF NAP 0.0006575 0.43299 7.76119
324 2VYN NAD 0.002694 0.40774 8.1571
325 1NNU TCT 0.02688 0.40298 8.33333
326 1NNU NAD 0.02621 0.40298 8.33333
327 3OND ADN 0.000461 0.4595 8.35821
328 3OND NAD 0.000461 0.4595 8.35821
329 1O0S NAI 0.00009585 0.4436 8.35821
330 3L9W AMP 0.00408 0.40343 8.35821
331 2Q0L FAD 0.009244 0.40021 8.36013
332 5U5G NAP 0.00000614 0.51009 8.47458
333 3GGO ENO 0.000042 0.49555 8.59873
334 3GGO NAI 0.000042 0.49555 8.59873
335 2NVK FAD 0.005078 0.41083 8.65672
336 4EIP K2C 0.00662 0.41066 8.65672
337 4EIP FAD 0.00662 0.41066 8.65672
338 3VPH OXM 0.000186 0.46169 8.70968
339 3VPH NAD 0.0001655 0.46088 8.70968
340 3B20 NAD 0.001673 0.4038 8.95522
341 3BAZ NAP 0.0002634 0.45225 9.00901
342 2E5V FAD 0.0079 0.40485 9.11017
343 2AG8 NAP 0.00001201 0.46432 9.12547
344 3A06 FOM 0.004601 0.40736 9.25373
345 3A06 NDP 0.004176 0.40674 9.25373
346 2XMY CDK 0.01554 0.40457 9.73154
347 1GR0 NAD 0.001521 0.42414 9.85075
348 1WDK NAD 0.000373 0.4241 9.85075
349 5TTJ FAD 0.004704 0.41018 9.85075
350 2DBZ NAP 0.0001368 0.45788 9.88024
351 4CJX NAP 0.001087 0.41416 10.0313
352 4XDY NAI 0.0002106 0.44547 10.1493
353 5CAE SIN 0.0006589 0.4372 10.1493
354 5CAE COA 0.0002217 0.43521 10.1493
355 1LDN NAD 0.0002593 0.45025 10.443
356 1HYE NAP 0.0005223 0.41724 10.4478
357 4YCA NDP 0.000002652 0.52698 10.5442
358 3FWN ATR 0.0007981 0.43524 10.7463
359 1Q0H NDP 0.006645 0.41144 10.7463
360 1Q0H FOM 0.009576 0.40316 10.7463
361 5ODQ FAD 0.004517 0.41387 10.9966
362 3TWO NDP 0.0005362 0.44339 11.0448
363 1YJQ NAP 0.000004923 0.52109 11.2211
364 1A5Z NAD 0.0002133 0.42567 11.5987
365 4FN4 NAD 0.002448 0.41076 11.811
366 1GUZ NAD 0.0003247 0.44335 11.9355
367 4ZGS NAD 0.0002944 0.43089 11.9403
368 3B1J NAD 0.00308 0.40687 12
369 3WBF NAP 0.0006039 0.43291 12.1311
370 3WBF API 0.002769 0.41259 12.1311
371 2F1K NAP 0.000007265 0.50027 12.1864
372 1UXG NAD 0.0004251 0.45118 12.2977
373 1LTH NAD 0.0001317 0.44273 12.5392
374 2FZW NAD 0.00157 0.43363 12.8358
375 5N2I NAP 0.000002423 0.49125 12.931
376 5AYV NAP 0.0000002753 0.53497 13.5922
377 5AYV KPL 0.000002995 0.53301 13.5922
378 5DN9 NAD 0.001702 0.42094 13.7313
379 4JDR FAD 0.003628 0.41678 13.7313
380 4GKV NAD 0.0008587 0.43398 13.9881
381 1J49 NAD 0.0008557 0.42705 14.4144
382 5BSH PRO 0.0001072 0.4668 14.4404
383 1GV0 NAD 0.0001865 0.45429 14.5161
384 2GAG NAD 0.004241 0.40988 14.9254
385 2GAG FAD 0.007599 0.40731 14.9254
386 2GAG FOA 0.007788 0.40687 14.9254
387 3EB9 FLC 0.02178 0.40378 15.0376
388 5J60 FAD 0.00522 0.40935 15.5224
389 4Q9N NAI 0.003047 0.40839 15.7718
390 4KQW NAP 0.000262 0.45441 16.4179
391 4YSX FAD 0.007362 0.40328 17.0213
392 4TSK NDP 0.0003647 0.43638 17.6119
393 5X20 NAD 0.00001738 0.48225 17.6282
394 1V8B NAD 0.0003952 0.44996 18.806
395 2JHF NAD 0.01404 0.43174 21.4925
396 1B74 DGN 0.003706 0.4584 24.4094
397 1JAY NAP 0.00004032 0.45704 25
398 2F5Z FAD 0.005646 0.41084 25
399 3RNM FAD 0.006134 0.40936 25.8621
Pocket No.: 2; Query (leader) PDB : 1Z82; Ligand: G3H; Similar sites found: 50
This union binding pocket(no: 2) in the query (biounit: 1z82.bio1) has 14 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5DX0 SFG 0.03552 0.40172 1.79104
2 5DXA SFG 0.03213 0.40125 1.79104
3 5M7Y MAN MAN MAN 0.01659 0.40782 2.08955
4 4USQ FAD 0.03436 0.41186 2.38806
5 1V47 ADX 0.02326 0.40387 2.38806
6 4LNL PLG 0.03508 0.41238 2.4024
7 1ZGD NAP 0.02929 0.41002 2.5641
8 5AYF C7H 0.0276 0.41598 2.6616
9 5AYF SAM 0.02654 0.41468 2.6616
10 4MDB RLT 0.01341 0.40324 2.66667
11 3VPC ADP 0.02439 0.40445 2.83688
12 3VPB ADP 0.03482 0.40082 2.83688
13 3U4C NDP 0.03787 0.40402 3.20285
14 3NDJ JHZ 0.03803 0.42001 3.28358
15 3NDJ SAH 0.03803 0.42001 3.28358
16 5T67 JHZ 0.04871 0.41316 3.28358
17 4REP FAD 0.04131 0.41223 3.28358
18 5T67 SAH 0.04841 0.40926 3.28358
19 4JTA NAP 0.02978 0.41419 3.6036
20 5TWJ SAM 0.02609 0.4013 3.7037
21 5HBN RPI 0.01201 0.40381 3.84615
22 3JQ3 ADP 0.04112 0.40439 3.8806
23 2BEK ATP 0.04314 0.40841 3.89105
24 4K39 SAM 0.02238 0.40119 4.47761
25 4K38 SAM 0.02513 0.40042 4.47761
26 5EIB GTP 0.02797 0.40856 4.77612
27 4LNU GTP 0.03235 0.4052 4.77612
28 1RM6 PCD 0.03396 0.41785 5.07463
29 1IBR GNP 0.02634 0.40861 5.07463
30 2V6G NAP 0.04413 0.40273 5.07463
31 2OYS FMN 0.01327 0.41813 5.3719
32 1SQS TLA 0.002252 0.40428 5.3719
33 4WZ8 3W7 0.01349 0.44091 5.67164
34 3MJE NDP 0.04124 0.40319 5.67164
35 1JGT APC 0.04741 0.40103 5.67164
36 5GUD 2IT 0.03504 0.41435 5.97015
37 5G5G FAD 0.01512 0.43818 6.26866
38 4CNK FAD 0.04711 0.41077 6.26866
39 1WA5 GTP 0.0382 0.40499 6.26866
40 1Z4O GL1 0.008788 0.41767 6.33484
41 3HP8 SUC 0.001331 0.43793 6.36364
42 4IZC 1GZ 0.04813 0.40176 6.54545
43 4L2I FAD 0.04333 0.40733 6.56716
44 3QRY DMJ 0.01255 0.40021 6.86567
45 2GJ8 ALF GDP 0.007146 0.43841 8.13953
46 2Y6P CTP 0.01693 0.40338 8.97436
47 4Q4K FMN 0.01934 0.41569 9.55224
48 5KOR GDP 0.01793 0.4097 9.55224
49 1EXB NDP 0.02911 0.41472 16.5049
50 4USR FAD 0.01813 0.42586 16.7164
Pocket No.: 3; Query (leader) PDB : 1Z82; Ligand: G3P; Similar sites found: 53
This union binding pocket(no: 3) in the query (biounit: 1z82.bio1) has 14 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5DXA SFG 0.02743 0.40485 1.79104
2 5DX8 SFG 0.02955 0.40315 1.79104
3 5DX0 SFG 0.03417 0.40261 1.79104
4 5M7Y MAN MAN MAN 0.01797 0.40605 2.08955
5 4KWD JF2 0.03087 0.40359 2.2293
6 4USQ FAD 0.02872 0.4161 2.38806
7 1V47 ADX 0.02124 0.40591 2.38806
8 4LNL PLG 0.04658 0.4056 2.4024
9 5AYF C7H 0.03337 0.4115 2.6616
10 5AYF SAM 0.03229 0.41008 2.6616
11 3VPC ADP 0.02193 0.40684 2.83688
12 3VPB ADP 0.02904 0.40499 2.83688
13 3VYW SAM 0.02745 0.40179 2.92208
14 3U4C NDP 0.03614 0.40511 3.20285
15 3NDJ JHZ 0.03294 0.42352 3.28358
16 3NDJ SAH 0.03294 0.42352 3.28358
17 4REP FAD 0.02767 0.42187 3.28358
18 5T67 JHZ 0.04662 0.41424 3.28358
19 5T67 SAH 0.04798 0.40948 3.28358
20 3KLJ FAD 0.03454 0.41068 3.37662
21 4JTA NAP 0.03435 0.41081 3.6036
22 3JQ3 ADP 0.03698 0.40689 3.8806
23 3EPO MP5 0.02533 0.40024 4.1791
24 4HXY NDP 0.04944 0.40004 4.1791
25 4K39 SAM 0.01736 0.40682 4.47761
26 4K38 SAM 0.02097 0.40446 4.47761
27 5EIB GTP 0.03201 0.40544 4.77612
28 4LNU GTP 0.03268 0.40496 4.77612
29 1RM6 PCD 0.04298 0.41215 5.07463
30 2V6G NAP 0.0423 0.40372 5.07463
31 2OYS FMN 0.01339 0.41793 5.3719
32 1SQS TLA 0.002425 0.40296 5.3719
33 4WZ8 3W7 0.009518 0.44926 5.67164
34 1JGT APC 0.04528 0.40212 5.67164
35 1JGT CMA 0.04528 0.40099 5.67164
36 5GUD 2IT 0.0302 0.41791 5.97015
37 5G5G FAD 0.01796 0.43406 6.26866
38 4CNK FAD 0.0461 0.4113 6.26866
39 1WA5 GTP 0.04307 0.40217 6.26866
40 1Z4O GL1 0.007641 0.42071 6.33484
41 3HP8 SUC 0.001547 0.43496 6.36364
42 4L2I FAD 0.02628 0.41924 6.56716
43 4L2I NAD 0.03681 0.41924 6.56716
44 2IO8 ADP 0.008767 0.43071 6.86567
45 2GJ8 ALF GDP 0.007829 0.43633 8.13953
46 1WF3 GNP 0.01575 0.42039 9.30233
47 5KOR GDP 0.01324 0.41648 9.55224
48 4Q4K FMN 0.0242 0.41055 9.55224
49 2BVL UDP 0.03379 0.4001 12.2388
50 2BVL GLC 0.03379 0.4001 12.2388
51 1EXB NDP 0.03522 0.41022 16.5049
52 2NLI LAC 0.0398 0.40164 22.3881
53 2NLI FMN 0.03326 0.40045 22.3881
Pocket No.: 4; Query (leader) PDB : 1Z82; Ligand: NDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1z82.bio1) has 28 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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