Receptor
PDB id Resolution Class Description Source Keywords
1Z4X 2.5 Å EC: 3.2.1.18 PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ-NEURAMINIDASE (HN) LIGAND SIALYLLACTOSE (SOAKED WITH SIALYLLACTOSE, PH8.0) SIMIAN VIRUS 5 HEMAGGLUTININ NEURAMINIDASE FUSION TETRAMER HYDROLASE
Ref.: STRUCTURAL STUDIES OF THE PARAINFLUENZA VIRUS 5 HEMAGGLUTININ-NEURAMINIDASE TETRAMER IN COMPLEX WIT RECEPTOR, SIALYLLACTOSE. STRUCTURE V. 13 803 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:601;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
NAG NAG B:1;
C:1;
Part of Protein;
Part of Protein;
none;
none;
submit data
408.404 n/a O=C(N...
NAG A:1;
Part of Protein;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
GLC GAL SIA D:1;
Valid;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1Z4V 2.3 Å EC: 3.2.1.18 PARAINFLUENZA VIRUS 5 (SV5) HEMAGGLUTININ-NEURAMINIDASE (HN) LIGAND DANA (SOAKED WITH DANA, PH 7.0) SIMIAN VIRUS 5 HEMAGGLUTININ NEURAMINIDASE FUSION TETRAMER HYDROLASE
Ref.: STRUCTURAL STUDIES OF THE PARAINFLUENZA VIRUS 5 HEMAGGLUTININ-NEURAMINIDASE TETRAMER IN COMPLEX WIT RECEPTOR, SIALYLLACTOSE. STRUCTURE V. 13 803 2005
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 30 families.
1 1Z4V - DAN C11 H17 N O8 CC(=O)N[C@....
2 1Z4X - GLC GAL SIA n/a n/a
3 1Z4Z - DAN C11 H17 N O8 CC(=O)N[C@....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 24 families.
1 1Z4V - DAN C11 H17 N O8 CC(=O)N[C@....
2 1Z4X - GLC GAL SIA n/a n/a
3 1Z4Z - DAN C11 H17 N O8 CC(=O)N[C@....
50% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 18 families.
1 1Z4V - DAN C11 H17 N O8 CC(=O)N[C@....
2 1Z4X - GLC GAL SIA n/a n/a
3 1Z4Z - DAN C11 H17 N O8 CC(=O)N[C@....
4 6JJM - BGC GAL SIA NAG n/a n/a
5 5B2D Kd = 56 uM GLC GAL SIA n/a n/a
6 6JJN - GAL NAG FUC GAL SIA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GLC GAL SIA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: GLC GAL SIA; Similar ligands found: 9
No: Ligand Similarity coefficient
1 GLC GAL SIA 1.0000
2 BGC GAL SIA 0.9887
3 NAG GAL SIA 0.9303
4 NAG 2FG SIA 0.9284
5 GLC GAL NGC 0.9282
6 GAL BGC SIA 0.9156
7 NGA GAL SIA 0.8915
8 NAG GAL NGC 0.8628
9 A2G GAL SIA 0.8614
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1z4v.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1z4v.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1z4v.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1z4v.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1z4v.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1Z4V; Ligand: DAN; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1z4v.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
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