Receptor
PDB id Resolution Class Description Source Keywords
1YOE 1.78 Å EC: 3.2.2.8 CRYSTAL STRUCTURE OF A THE E. COLI PYRIMIDINE NUCLEOSIDE HYD YBEK WITH BOUND RIBOSE ESCHERICHIA COLI PYRIMIDINE NUCLEOSIDE HYDROLASE BACTERIAL NUCLEOSIDASE RIBENZYME-PRODUCT COMPLEX HYDROLASE
Ref.: CRYSTAL STRUCTURE OF THE E. COLI PYRIMIDINE NUCLEOS HYDROLASE YBEK WITH BOUND RIBOSE TO BE PUBLISHED
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:1001;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
RIB A:2001;
Valid;
none;
submit data
150.13 C5 H10 O5 C([C@...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YOE 1.78 Å EC: 3.2.2.8 CRYSTAL STRUCTURE OF A THE E. COLI PYRIMIDINE NUCLEOSIDE HYD YBEK WITH BOUND RIBOSE ESCHERICHIA COLI PYRIMIDINE NUCLEOSIDE HYDROLASE BACTERIAL NUCLEOSIDASE RIBENZYME-PRODUCT COMPLEX HYDROLASE
Ref.: CRYSTAL STRUCTURE OF THE E. COLI PYRIMIDINE NUCLEOS HYDROLASE YBEK WITH BOUND RIBOSE TO BE PUBLISHED
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1YOE - RIB C5 H10 O5 C([C@@H]1[....
2 3G5I - DNB C11 H17 N3 O3 c1cc(c(cc1....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1YOE - RIB C5 H10 O5 C([C@@H]1[....
2 3G5I - DNB C11 H17 N3 O3 c1cc(c(cc1....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 2MAS Kd = 30 nM PIR C11 H16 N2 O3 c1cc(ccc1[....
2 1YOE - RIB C5 H10 O5 C([C@@H]1[....
3 3G5I - DNB C11 H17 N3 O3 c1cc(c(cc1....
4 3MKN Ki = 76 uM DNB C11 H17 N3 O3 c1cc(c(cc1....
5 3B9X - NOS C10 H12 N4 O5 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: RIB; Similar ligands found: 105
No: Ligand ECFP6 Tc MDL keys Tc
1 Z6J 1 1
2 RIB 1 1
3 AHR 1 1
4 FUB 1 1
5 32O 1 1
6 MAN 0.653846 0.866667
7 BGC 0.653846 0.866667
8 GAL 0.653846 0.866667
9 ALL 0.653846 0.866667
10 WOO 0.653846 0.866667
11 GIV 0.653846 0.866667
12 BMA 0.653846 0.866667
13 GLA 0.653846 0.866667
14 GXL 0.653846 0.866667
15 GLC 0.653846 0.866667
16 FUB AHR 0.486486 0.875
17 AHR AHR 0.486486 0.875
18 GAF 0.483871 0.764706
19 GCS 0.483871 0.684211
20 G3F 0.483871 0.764706
21 PA1 0.483871 0.684211
22 SHG 0.483871 0.764706
23 G2F 0.483871 0.764706
24 1GN 0.483871 0.684211
25 2FG 0.483871 0.764706
26 X6X 0.483871 0.684211
27 2H5 0.483871 0.764706
28 3MG 0.46875 0.764706
29 SR1 0.466667 0.764706
30 2GS 0.454545 0.764706
31 AHR AHR AHR 0.45 0.875
32 FUB AHR AHR 0.45 0.875
33 RP5 0.441176 0.675
34 ABF 0.441176 0.675
35 HSX 0.441176 0.675
36 GAL BGC 0.439024 0.742857
37 MAL MAL 0.439024 0.722222
38 GAL GLC 0.439024 0.742857
39 CBK 0.439024 0.742857
40 MAL 0.439024 0.742857
41 N9S 0.439024 0.742857
42 BMA GAL 0.439024 0.742857
43 BGC GLC 0.439024 0.742857
44 GLA GAL 0.439024 0.742857
45 LAT 0.439024 0.742857
46 BGC BMA 0.439024 0.742857
47 BGC GAL 0.439024 0.742857
48 CBI 0.439024 0.742857
49 GLA GLA 0.439024 0.742857
50 LBT 0.439024 0.742857
51 GLC GAL 0.439024 0.742857
52 BMA BMA 0.439024 0.742857
53 MAB 0.439024 0.742857
54 GLC BGC 0.439024 0.742857
55 B2G 0.439024 0.742857
56 TRE 0.424242 0.742857
57 YIO 0.419355 0.757576
58 GLF 0.40625 0.735294
59 ALX 0.405405 0.619048
60 BNX 0.405405 0.619048
61 M3M 0.404762 0.742857
62 MAN GLC 0.404762 0.742857
63 LB2 0.404762 0.742857
64 GLA GAL GLC 0.4 0.742857
65 ASO 0.4 0.757576
66 MTT 0.4 0.742857
67 DXI 0.4 0.742857
68 CEX 0.4 0.742857
69 CE6 0.4 0.742857
70 MAN BMA BMA BMA BMA 0.4 0.742857
71 BGC BGC BGC BGC BGC BGC 0.4 0.742857
72 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.4 0.742857
73 BGC GLC GLC GLC GLC 0.4 0.742857
74 GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
75 GAL GAL GAL 0.4 0.742857
76 MAN MAN BMA BMA BMA BMA 0.4 0.742857
77 BMA BMA BMA BMA BMA 0.4 0.742857
78 B4G 0.4 0.742857
79 BGC GLC GLC GLC GLC GLC GLC 0.4 0.742857
80 GLC GAL GAL 0.4 0.742857
81 BMA MAN BMA 0.4 0.742857
82 BGC GLC GLC 0.4 0.742857
83 GLC BGC BGC BGC BGC BGC 0.4 0.742857
84 CTT 0.4 0.742857
85 GLC GLC BGC GLC GLC GLC GLC 0.4 0.742857
86 CT3 0.4 0.742857
87 GLC BGC BGC 0.4 0.742857
88 GLC GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
89 GLC BGC GLC 0.4 0.742857
90 CEY 0.4 0.742857
91 MLR 0.4 0.742857
92 BMA BMA MAN 0.4 0.722222
93 MAN BMA BMA 0.4 0.742857
94 GLC GLC GLC GLC GLC 0.4 0.742857
95 BGC GLC GLC GLC 0.4 0.742857
96 GLC GLC BGC 0.4 0.742857
97 BMA BMA BMA BMA BMA BMA 0.4 0.742857
98 CE5 0.4 0.742857
99 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.4 0.742857
100 CTR 0.4 0.742857
101 GLC BGC BGC BGC BGC 0.4 0.742857
102 BGC BGC BGC GLC 0.4 0.742857
103 BMA BMA BMA 0.4 0.742857
104 MT7 0.4 0.742857
105 CE8 0.4 0.742857
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YOE; Ligand: RIB; Similar sites found: 480
This union binding pocket(no: 1) in the query (biounit: 1yoe.bio2) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2ALG HP6 0.001703 0.43132 None
2 2ALG DAO 0.001703 0.43132 None
3 1MQ0 BRD 0.000152 0.42735 None
4 1UO5 PIH 0.01582 0.4243 None
5 3TA2 AKG 0.00568 0.42088 None
6 1UO4 PIH 0.01349 0.41928 None
7 1IS3 LAT 0.0003236 0.41342 None
8 4F4S EFO 0.003279 0.40714 None
9 3TO7 COA 0.001566 0.45595 0.724638
10 4R33 TRP 0.008172 0.41918 1.24224
11 4R33 SAH 0.008172 0.41918 1.24224
12 1GAD NAD 0.01161 0.40508 1.24224
13 3UEC ALA ARG TPO LYS 0.005896 0.41446 1.36986
14 4DQ2 BTX 0.0004984 0.46537 1.5528
15 1DSS NAD 0.006834 0.41326 1.5528
16 3NFZ 3NF 0.001005 0.40294 1.5528
17 5YAS FAC 0.0003061 0.44415 1.55642
18 3H86 AP5 0.03462 0.40339 1.5625
19 2OI2 DP6 0.0003149 0.44657 1.71233
20 1O68 KIV 0.004863 0.40038 1.81818
21 2QDT I38 0.002207 0.41854 1.85874
22 1Q11 TYE 0.0001238 0.46323 1.86335
23 2PTZ PAH 0.0004063 0.44753 1.86335
24 1RYD GLC 0.0009878 0.44112 1.86335
25 1XOC VAL ASP SER LYS ASN THR SER SER TRP 0.004127 0.43966 1.86335
26 3TXO 07U 0.0009071 0.43133 1.86335
27 3DAG FEG 0.002936 0.4285 1.86335
28 2OWZ CIT 0.002227 0.42614 1.86335
29 4KCT PYR 0.0007821 0.42554 1.86335
30 1Z45 GAL 0.0016 0.41943 1.86335
31 1HEX NAD 0.006908 0.41593 1.86335
32 1X8X TYR 0.0009899 0.41427 1.86335
33 2CE7 ADP 0.0003326 0.41389 1.86335
34 2Q8M AMP 0.0009624 0.40505 1.86335
35 2YFT DQR 0.0005883 0.40078 1.86335
36 2VAR KDF 0.0001052 0.43827 1.91693
37 2VAR KDG 0.0002921 0.42471 1.91693
38 3CL7 HYN 0.01309 0.40004 1.94805
39 2C7G ODP 0.0103 0.43297 1.97368
40 2C7G FAD 0.02128 0.41921 1.97368
41 4GNC ASO 0.002103 0.40899 2.00669
42 4JWX 1N4 0.003482 0.40611 2.14286
43 4OYA 1VE 0.002031 0.48715 2.17391
44 4USQ FAD 0.0006955 0.46635 2.17391
45 4G1V FAD 0.0007665 0.45436 2.17391
46 3UH0 TSB 0.002677 0.42689 2.17391
47 3ZTV ADN 0.001316 0.425 2.17391
48 2F2U M77 0.0005064 0.42365 2.17391
49 1WVG CXY 0.003056 0.42281 2.17391
50 3CXO 1N5 0.006047 0.42234 2.17391
51 1WVG APR 0.004491 0.42083 2.17391
52 3CXO 3LR 0.007298 0.41628 2.17391
53 1RX0 FAD 0.03034 0.41078 2.17391
54 1CL2 PPG 0.004954 0.41067 2.17391
55 3FED BIX 0.00433 0.4091 2.17391
56 1NML CIT 0.003927 0.40405 2.17391
57 1OTH PAO 0.01548 0.40611 2.18069
58 1JA9 PYQ 0.004342 0.42579 2.18978
59 1JA9 NDP 0.02918 0.41954 2.18978
60 2O66 FLC 0.006404 0.40095 2.22222
61 3P0K FAD 0.001061 0.44156 2.25564
62 1OGD RIP 0.0003918 0.44352 2.29008
63 2P41 G1G 0.002954 0.40355 2.29508
64 4LWM MHO 0.0237 0.40832 2.30415
65 1NF8 BOG 0.00377 0.42304 2.41546
66 1NF8 ISC 0.0007246 0.41085 2.41546
67 1C3V PDC 0.002071 0.421 2.44898
68 1RYI GOA 0.0002225 0.52865 2.48447
69 2YVF NAD 0.002233 0.46774 2.48447
70 2YVF FAD 0.00241 0.46549 2.48447
71 4WBD CIT 0.0006863 0.46427 2.48447
72 1B9I PXG 0.0009963 0.44451 2.48447
73 2VJJ RAM GLC GAL NAG NAG GLC 0.005306 0.44255 2.48447
74 4CCN OGA 0.001273 0.43645 2.48447
75 4PLG NAI 0.005804 0.43007 2.48447
76 4PLG OXM 0.005804 0.43007 2.48447
77 1PL6 NAD 0.002118 0.42931 2.48447
78 3V1U NAD 0.002857 0.42899 2.48447
79 2HGS ADP 0.002231 0.42839 2.48447
80 1PL6 572 0.005738 0.42577 2.48447
81 1C7R PA5 0.001001 0.42437 2.48447
82 1V1A ADP 0.005353 0.42196 2.48447
83 2HGS GSH 0.001883 0.41892 2.48447
84 1V1A KDG 0.003414 0.41814 2.48447
85 4WBD ADP 0.005188 0.41692 2.48447
86 3LIH RAF 0.006766 0.40334 2.48447
87 1PDZ PGA 0.0003255 0.40224 2.48447
88 2VQ5 HBA 0.00135 0.44272 2.48756
89 3U4C NDP 0.00816 0.41424 2.4911
90 3IL6 B83 0.002325 0.42393 2.49221
91 1I9G SAM 0.004223 0.44398 2.5
92 4A6F SEP 0.005743 0.438 2.5
93 2GJ3 FAD 0.004748 0.42616 2.5
94 3LTW HLZ 0.002923 0.42113 2.5
95 3HZL 6PC 0.0001696 0.50288 2.51889
96 1GSA ADP 0.001104 0.47186 2.53165
97 1GSA GSH 0.006853 0.43095 2.53165
98 3FS8 ACO 0.02221 0.43135 2.5641
99 1QH9 LAC 0.005971 0.40795 2.58621
100 1Y7I SAL 0.001546 0.40749 2.61194
101 1W8S FBP 0.01586 0.40041 2.6616
102 3RKR NAP 0.003552 0.40319 2.67176
103 3IOI 1GW 0.003447 0.43401 2.68456
104 1V7R CIT 0.009659 0.42661 2.68817
105 1GPJ CIT 0.0004489 0.45564 2.72277
106 2FR6 URI 0.0002429 0.40054 2.73973
107 1H16 PYR 0.0001643 0.49278 2.79503
108 4LIT AKG 0.0001435 0.46837 2.79503
109 1KC7 PPR 0.0004036 0.46584 2.79503
110 3VPD ANP 0.0005678 0.45066 2.79503
111 4LWA Q13 0.00359 0.44129 2.79503
112 4NES UDP 0.000897 0.43629 2.79503
113 2BO4 FLC 0.002196 0.4334 2.79503
114 1WDA BAG 0.0009189 0.42288 2.79503
115 4GQB 0XU 0.01818 0.42025 2.79503
116 3Q3C NAD 0.01857 0.41983 2.79503
117 3MD0 GDP 0.001203 0.41842 2.79503
118 1VJT NAD 0.004405 0.41273 2.79503
119 1ZCB GDP 0.01823 0.41131 2.79503
120 1UBY DMA 0.003986 0.41053 2.79503
121 3IO3 ADP 0.005545 0.40681 2.79503
122 2J0W ADP 0.00521 0.4059 2.79503
123 1RZM E4P 0.009797 0.40471 2.79503
124 2NCD ADP 0.005556 0.40347 2.79503
125 2ZJF BSU 0.002073 0.40053 2.79503
126 2OKK ABU 0.01691 0.40022 2.79503
127 2HXT EHM 0.005684 0.40011 2.79503
128 2HEK GDP 0.002182 0.40006 2.79503
129 3P7I P7I 0.000737 0.4327 2.80374
130 3PJU C2E 0.001129 0.44734 2.81124
131 3MBG FAD 0.01067 0.40521 2.8777
132 1SQ5 PAU 0.004816 0.40055 2.92208
133 1TU3 GNP 0.0008965 0.44987 2.92398
134 2CSN CKI 0.007875 0.41069 3.0303
135 1G8S MET 0.002035 0.4278 3.04348
136 1P9P SAH 0.001568 0.43464 3.06513
137 4DL8 UMP AF3 PO4 0.005676 0.40829 3.10345
138 2Q8H TF4 0.00004083 0.53254 3.10559
139 2BLE 5GP 0.001845 0.47008 3.10559
140 1Z44 NPO 0.008197 0.43947 3.10559
141 1Z42 HBA 0.01066 0.43728 3.10559
142 9LDB OXM 0.0067 0.43463 3.10559
143 2PWY SAH 0.001845 0.43353 3.10559
144 2ZJ3 G6P 0.001556 0.43097 3.10559
145 1KBJ FMN 0.003814 0.42378 3.10559
146 4WVH ASP HIS ASP ALA HIS ALA 0.0008893 0.42342 3.10559
147 8CAT NDP 0.004377 0.41468 3.10559
148 2J8Z NAP 0.008936 0.41257 3.10559
149 2NVK NAP 0.002463 0.41204 3.10559
150 2G36 TRP 0.0008863 0.40991 3.10559
151 9LDT OXM 0.02121 0.40932 3.10559
152 4BT5 23B 0.001867 0.41115 3.11284
153 2PT9 2MH 0.0005665 0.47018 3.11526
154 1Y9Q MED 0.001353 0.43533 3.125
155 3U5S FAD 0.002982 0.42145 3.1746
156 2H6B 3C4 0.04588 0.40312 3.2
157 1UXG FUM 0.01143 0.41825 3.23625
158 1UXG NAD 0.01143 0.41825 3.23625
159 3GEG NAD 0.00341 0.4288 3.23887
160 1H9G COA MYR 0.01071 0.40655 3.29218
161 1A69 FMB 0.01067 0.43637 3.36134
162 1M1B SPV 0.001734 0.42416 3.38983
163 2DTX BMA 0.01791 0.41064 3.40909
164 1HFA PIO 0.002112 0.45125 3.41615
165 2WQP WQP 0.002068 0.43638 3.41615
166 4GYW UDP 0.003099 0.43598 3.41615
167 2AEB ABH 0.01168 0.41307 3.41615
168 3GJB AKG 0.001719 0.41251 3.44828
169 1CBF SAH 0.0001249 0.41842 3.50877
170 1EYE PMM 0.0007755 0.40894 3.57143
171 1VQ2 DDN 0.00009074 0.4185 3.62694
172 3DCM SAM 0.004832 0.41111 3.64583
173 1EDO NAP 0.008829 0.44394 3.68852
174 2HW1 FRU 0.0004529 0.44798 3.69128
175 1NZY BCA 0.0003888 0.4683 3.71747
176 1T26 NAI 0.001131 0.49743 3.72671
177 1T26 GBD 0.001131 0.49743 3.72671
178 3TKA CTN 0.001221 0.49346 3.72671
179 2IMP NAI 0.002127 0.47775 3.72671
180 2EB5 OXL 0.0004271 0.45656 3.72671
181 2BNE U5P 0.002284 0.44355 3.72671
182 2ZWS PLM 0.007513 0.44147 3.72671
183 2XK9 XK9 0.002703 0.44101 3.72671
184 1Y42 TYR 0.00067 0.43433 3.72671
185 4PO2 ASN ARG LEU LEU LEU THR GLY 0.001634 0.43391 3.72671
186 3FPZ AHZ 0.02424 0.42757 3.72671
187 1FP1 HCC 0.002348 0.42176 3.72671
188 2XVE FAD 0.02431 0.41977 3.72671
189 1OJ7 NZQ 0.02295 0.41722 3.72671
190 2YIV NBN 0.006918 0.41139 3.72671
191 3SHR CMP 0.001397 0.40784 3.72671
192 2YIV YIV 0.01693 0.4002 3.72671
193 3K5X P8D 0.002195 0.40012 3.72671
194 2GDZ NAD 0.004994 0.42458 3.74532
195 4B16 NAG 0.004031 0.44574 3.7594
196 3GM5 CIT 0.0005876 0.45069 3.77358
197 4EKV BTN 0.0145 0.40846 3.77358
198 2B82 ADN 0.005722 0.40995 3.79147
199 2F59 INI 0.00006365 0.41552 3.82166
200 2Q37 3AL 0.004767 0.4062 3.8674
201 1IYE PGU 0.009937 0.41315 3.8835
202 1OFH ADP 0.004371 0.42132 4.02299
203 4O8A 2OP 0.0002535 0.49452 4.03727
204 2AMV BIN 0.00083 0.47926 4.03727
205 4NTD FAD 0.00105 0.46352 4.03727
206 2NLI FMN 0.007654 0.43578 4.03727
207 2NLI LAC 0.007654 0.43578 4.03727
208 3B9Z CO2 0.00147 0.43379 4.03727
209 1R37 NAD 0.004268 0.43248 4.03727
210 3SUC ATP 0.00573 0.43137 4.03727
211 3AHC TPP 0.003493 0.43115 4.03727
212 1DXY COI 0.006409 0.42719 4.03727
213 1ZGA HMK 0.001826 0.41695 4.03727
214 4IVG ANP 0.02139 0.41555 4.03727
215 3L6R MLI 0.006339 0.41307 4.03727
216 4LHM AZZ 0.003354 0.41245 4.03727
217 1PEA ACM 0.01042 0.40994 4.03727
218 2Q1A 2KT 0.007327 0.40418 4.09556
219 1TDF FAD 0.0007702 0.4779 4.11392
220 1TDF NAP 0.001765 0.4779 4.11392
221 4P3H 25G 0.005381 0.43839 4.14508
222 3SVL FMN 0.003064 0.41508 4.14508
223 4U36 TNR 0.0002942 0.46813 4.16667
224 1R0X ATP 0.01796 0.40446 4.1958
225 4LO6 SIA GAL 0.00858 0.41046 4.21053
226 1WHT BZS 0.007821 0.40297 4.29688
227 3KJI ADP 0.003152 0.41243 4.33071
228 2V7T SAH 0.001656 0.48737 4.34783
229 3U1T MLI 0.0002002 0.47925 4.34783
230 1R27 MGD 0.002067 0.44842 4.34783
231 3IHB GLU 0.001931 0.43587 4.34783
232 3IHB TRS 0.007546 0.4253 4.34783
233 3UR0 SVR 0.01494 0.41861 4.34783
234 1YS4 NAP 0.004416 0.41628 4.34783
235 1I0Z OXM 0.01159 0.41479 4.34783
236 2CKM AA7 0.02282 0.4078 4.34783
237 1GJW MAL 0.002092 0.40048 4.34783
238 1E7S NAP 0.005415 0.42563 4.36137
239 1T57 FMN 0.0004121 0.45831 4.36893
240 1Y1A GSH 0.005192 0.44789 4.37158
241 3F81 STT 0.01173 0.41454 4.37158
242 1QJC PNS 0.03486 0.40764 4.43038
243 3S2Y FMN 0.004314 0.40704 4.52261
244 4N7C AEF 0.005672 0.41521 4.54545
245 4IS0 1R4 0.002918 0.42363 4.56432
246 2HGZ PBF 0.00144 0.43968 4.57516
247 2Y7P SAL 0.0006348 0.43526 4.58716
248 1H8P PC 0.004598 0.43412 4.58716
249 2BZ1 TAU 0.0001911 0.52577 4.59184
250 1AX2 NDG GAL 0.002694 0.41051 4.60251
251 3ZGE ASP 0.0002656 0.4832 4.65839
252 1T0S BML 0.0003206 0.47945 4.65839
253 1SOW NAD 0.002577 0.4394 4.65839
254 1J0D 5PA 0.01039 0.42667 4.65839
255 4KCF AKM 0.003176 0.42384 4.65839
256 4ARF IP8 GLY PRO ALA 0.002045 0.41985 4.65839
257 4KCF FMN 0.002283 0.41796 4.65839
258 3CLH NAD 0.01778 0.41038 4.65839
259 2Q09 DI6 0.003216 0.40214 4.65839
260 3DGB MUC 0.001115 0.40312 4.71204
261 2F7C CCU 0.001146 0.40474 4.72103
262 1ZUW DGL 0.0006567 0.42843 4.77941
263 3BL6 FMC 0.0004565 0.45024 4.78261
264 4JCA CIT 0.008238 0.4301 4.79042
265 3I51 45C 0.0009903 0.40669 4.81482
266 4COQ SAN 0.0008234 0.44447 4.8583
267 2HMT NAI 0.02664 0.40972 4.86111
268 3K56 IS3 0.002905 0.41154 4.88722
269 3JQ3 ADP 0.001443 0.40673 4.91803
270 1EYQ NAR 0.001071 0.42034 4.95496
271 1X54 4AD 0.0009807 0.44656 4.96894
272 3ZPG 5GP 0.003195 0.44172 4.96894
273 1F1V DHY 0.001792 0.41183 4.96894
274 3NNF AKG 0.005799 0.40849 4.96894
275 1MG1 MAL 0.007022 0.40804 4.96894
276 2FGQ MLT 0.006493 0.40641 4.96894
277 4QVH FLC 0.04224 0.40158 4.96894
278 4B9E FAH 0.001319 0.44316 4.98339
279 3R51 MMA 0.001384 0.45915 5
280 1UW1 ADP 0.002624 0.4168 5
281 1Y75 NAG 0.0007997 0.42517 5.08475
282 1NU4 MLA 0.005834 0.44729 5.15464
283 4TMK T5A 0.03369 0.43124 5.16432
284 2QQF A1R 0.004783 0.4197 5.19481
285 3OIG NAD 0.006902 0.44376 5.26316
286 3OIG IMJ 0.0196 0.40282 5.26316
287 1ZED PNP 0.0005684 0.45928 5.2795
288 2W8Q SIN 0.001657 0.4388 5.2795
289 3ZOK NAD 0.01922 0.41793 5.2795
290 2IZ1 ATR 0.003489 0.41787 5.2795
291 4DYO SD4 0.001436 0.41549 5.2795
292 4ME6 ADP 0.005697 0.40303 5.2795
293 1NW5 SAM 0.005533 0.40874 5.32915
294 1BGQ RDC 0.0003398 0.46908 5.33333
295 1F5F DHT 0.000267 0.40436 5.36585
296 2OYS FMN 0.0008524 0.44351 5.3719
297 2XI7 XI7 0.001105 0.48551 5.43478
298 2F01 BTQ 0.03356 0.41498 5.51181
299 2F01 BTN 0.03356 0.41498 5.51181
300 1T8U UAP SGN IDS SGN 0.002954 0.44393 5.51471
301 1T8U A3P 0.00713 0.40429 5.51471
302 4N02 FNR 0.002873 0.45663 5.59006
303 3PNL ADP 0.000791 0.44676 5.59006
304 1T3D CYS 0.001945 0.43573 5.59006
305 3DG6 MUC 0.0001662 0.42473 5.59006
306 2JC9 ADN 0.002026 0.41539 5.59006
307 1PFK ADP 0.0004097 0.44739 5.625
308 2OFD NGA 0.0009057 0.44272 5.6338
309 1Y2W NAG 0.001143 0.43843 5.6338
310 2OFE NAG 0.001166 0.43807 5.6338
311 2OHV NHL 0.0009191 0.42287 5.68182
312 2WCV FUC 0.0006918 0.41835 5.71429
313 2X61 CH 0.0139 0.41549 5.81395
314 1C1L GAL BGC 0.001322 0.44312 5.83942
315 3L24 GOA 0.0006342 0.47542 5.90062
316 2C5S AMP 0.000118 0.45681 5.90062
317 2I4O ATP 0.0008432 0.42723 5.90062
318 1A59 CIT 0.003943 0.42218 5.90062
319 3NKS ACJ 0.0001966 0.41357 5.90062
320 1QS0 TDP 0.006318 0.40641 5.90062
321 2C4I BTN 0.00321 0.41211 5.90406
322 1NXJ GLV 0.003624 0.40017 6.01093
323 1JAC AMG 0.0006398 0.48592 6.01504
324 3CEV ARG 0.003222 0.40211 6.02007
325 4BAS GNP 0.005847 0.40957 6.03015
326 3W54 RNB 0.0009214 0.40076 6.07903
327 1PR9 NAP 0.0006387 0.46661 6.14754
328 2ZE3 AKG 0.0009395 0.43504 6.18182
329 2BOI MFU 0.0001196 0.46383 6.19469
330 4F8L GAL 0.01205 0.43059 6.2069
331 1B8U OAA 0.0009379 0.45812 6.21118
332 2J7T 274 0.001165 0.44986 6.21118
333 1V2X SAM 0.001223 0.43517 6.21118
334 1B8U NAD 0.003745 0.41743 6.21118
335 1NHK CMP 0.0002031 0.48177 6.25
336 3AJ6 NGA 0.04351 0.40761 6.29371
337 2YLD CMO 0.008125 0.40227 6.29921
338 4O1M NAD 0.005812 0.42178 6.34921
339 2QGI UDP 0.001842 0.40077 6.45161
340 1JGS SAL 0.002081 0.47098 6.52174
341 4B7E OGA 0.00091 0.4356 6.52174
342 4M5P 23W 0.003986 0.42916 6.52174
343 1H2K OGA 0.002441 0.42445 6.52174
344 4M5P MLA 0.01168 0.42244 6.52174
345 1H2M OGA 0.002831 0.42172 6.52174
346 4BMO FMN 0.004966 0.41902 6.52174
347 2Y0I AKG 0.003524 0.41157 6.52174
348 1R6W 164 0.0003648 0.40734 6.52174
349 2HVW DDN 0.0008855 0.40019 6.52174
350 1R18 SAH 0.004654 0.41535 6.60793
351 1U7Z PMT 0.001561 0.45 6.63717
352 2E1A MSE 0.0001762 0.45019 6.66667
353 1NVU GTP 0.03441 0.40891 6.8323
354 1A5Z OXM 0.009245 0.41233 6.89655
355 1GVF PGH 0.0007789 0.42012 6.99301
356 3DX5 DHB 0.0007172 0.41777 6.99301
357 3JQM GTP 0.003256 0.40194 7.00637
358 4DVE BTN 0.01118 0.40325 7.07071
359 4HZD COA 0.0137 0.41172 7.0922
360 4AQL TXC 0.00002226 0.50006 7.14286
361 1XHL NDP 0.0003591 0.47589 7.14286
362 2P1M IHP 0.001931 0.43605 7.14286
363 4K7O EKZ 0.002889 0.42814 7.14286
364 4C2G ALA ALA ALA ALA 0.001677 0.41292 7.14286
365 1OGZ EQU 0.0009133 0.40696 7.2
366 3OZG SSI 0.00469 0.40561 7.2
367 3E81 SLB 0.001228 0.43028 7.31707
368 1SVK ALF GDP 0.01037 0.42941 7.45342
369 1Y3A GDP 0.01047 0.42047 7.45342
370 1P72 THM 0.003138 0.40789 7.45342
371 3QP6 HL6 0.0003395 0.4159 7.54717
372 1BH2 GSP 0.01404 0.42129 7.61905
373 2W3L DRO 0.01161 0.41476 7.63889
374 3BY8 MLT 0.002845 0.42844 7.74648
375 4F2Q QUS 0.002288 0.4156 7.75194
376 4RJK PYR 0.0001707 0.52835 7.76398
377 4W6Z ETF 0.003016 0.44292 7.76398
378 1Q3Q ANP 0.0257 0.4161 7.76398
379 3CQ5 PMP 0.001653 0.41316 7.76398
380 1RY2 AMP 0.0115 0.40384 7.76398
381 1SC3 MLI 0.003297 0.43295 7.86517
382 4FGC PQ0 0.001419 0.42772 7.87879
383 2XRH NIO 0.005393 0.41617 8
384 2DKH FAD 0.001118 0.4562 8.07453
385 2DKH 3HB 0.002054 0.45191 8.07453
386 4M51 BEZ 0.001578 0.44766 8.07453
387 2X2T GAL NGA 0.01215 0.41381 8.07453
388 1DL7 NCH 0.01015 0.43455 8.25688
389 1ECM TSA 0.001653 0.41316 8.25688
390 1JUV NDP 0.002288 0.43456 8.29016
391 1NN5 2DT 0.005325 0.42339 8.37209
392 1NN5 ANP 0.005325 0.42339 8.37209
393 1YAG ATP 0.01131 0.40116 8.38509
394 1SS4 GSH 0.002105 0.47671 8.49673
395 1SS4 CIT 0.00103 0.46801 8.49673
396 2D37 NAD 0.005521 0.42001 8.52273
397 2D37 FMN 0.006527 0.41555 8.52273
398 3CBG 4FE 0.00003003 0.55265 8.62069
399 3CBG FER 0.003741 0.43843 8.62069
400 4LFL TG6 0.001953 0.40215 8.64198
401 4HA6 PXM 0.004679 0.40653 8.69565
402 1TUV VK3 0.0002681 0.49335 8.77193
403 1VR0 3SL 0.002597 0.40569 8.90688
404 1NP0 NGT 0.00442 0.41351 8.94737
405 1ZFJ IMP 0.002829 0.44986 9.00621
406 3T2W BTN 0.001814 0.40479 9.01639
407 1L1Q 9DA 0.001349 0.43345 9.13978
408 1XX4 BAM 0.004055 0.40623 9.1954
409 2QLX RM4 0.009889 0.40453 9.25926
410 1BTN I3P 0.002163 0.47109 9.43396
411 4AF5 CIT 0.001351 0.43536 9.47368
412 3RF4 FUN 0.0008201 0.43087 9.48276
413 4EXO PYR 0.003904 0.42958 9.58904
414 2JFV FLC 0.001068 0.43969 9.62199
415 5EQU AKG 0.01251 0.40626 9.62733
416 4IOK XPO 0.01123 0.40128 9.62733
417 2VDJ HSE 0.001363 0.45057 9.63455
418 3ZS7 ATP 0.0003521 0.4611 9.66667
419 3PNA CMP 0.0000725 0.46487 9.74026
420 3QDY A2G GAL 0.0002974 0.48094 9.79021
421 3QDW A2G 0.00149 0.45761 9.79021
422 3QDW NDG 0.0007758 0.45333 9.79021
423 3QDT A2G GAL 0.003337 0.43271 9.79021
424 3QDY CBS 0.00401 0.42186 9.79021
425 2NZU BG6 0.0008413 0.41731 10
426 1FIQ FAD 0.002916 0.4396 10.0457
427 1FIQ MTE 0.005034 0.42443 10.0457
428 1FIQ SAL 0.006183 0.42317 10.0457
429 2BGM NAJ 0.02019 0.42094 10.0719
430 2BGM MAX 0.008905 0.40698 10.0719
431 1XNK XS2 0.00217 0.41883 10.2041
432 1YFZ IMP 0.002767 0.41587 10.2439
433 3I0O SMI 0.003164 0.41348 10.2484
434 3I0O ADP 0.001101 0.41118 10.2484
435 1UWZ THU 0.0007226 0.43767 10.2941
436 2YD6 FLC 0.0001851 0.51986 10.3774
437 3MAG 3MA 0.0002694 0.50479 10.4235
438 3IB8 AMP 0.0008235 0.43297 10.559
439 1QO0 BMD 0.004352 0.41379 10.7143
440 3MCT 3MC 0.000722 0.43305 10.7744
441 1KOL NAD 0.00297 0.4416 10.8696
442 4LNL PLG 0.001163 0.42711 10.8696
443 4LNL 2BO 0.001844 0.42162 10.8696
444 4LNL 2BK 0.001844 0.42162 10.8696
445 2FWP CIT 0.006127 0.4221 10.929
446 2FWP ICR 0.01826 0.4063 10.929
447 2EFJ 37T 0.0002544 0.43631 11.1801
448 4C0X FMN 0.002172 0.4355 11.33
449 4C0X AQN 0.006423 0.42122 11.33
450 1WUR 8DG 0.001394 0.43673 11.3636
451 1O9U ADZ 0.01478 0.40971 11.4907
452 1UF5 CDT 0.002161 0.40159 11.5512
453 1WTC ACP 0.004839 0.41825 11.7647
454 1A5V Y3 0.003456 0.41191 12.0253
455 1I2B USQ 0.0006967 0.48621 12.4224
456 1I2B NAD 0.0006967 0.48621 12.4224
457 1I2B UPG 0.0006967 0.48621 12.4224
458 3H22 B53 0.000134 0.45793 12.4579
459 1Y7P RIP 0.0009034 0.45879 12.5561
460 3Q9T FAY 0.002587 0.44644 12.7329
461 2IYG FMN 0.0009816 0.40625 12.9032
462 1GOT GDP 0.01442 0.41182 13.6986
463 3O03 NAP 0.0053 0.41933 13.7457
464 4INB 1F6 0.0005367 0.44959 14.3836
465 3S9K CIT 0.002678 0.47653 14.4068
466 1ULE GLA GAL NAG 0.006213 0.42029 14.6667
467 4G28 0W8 0.002251 0.40805 14.7059
468 1H8G CHT 0.001582 0.47728 15.7895
469 1PTR PRB 0.002529 0.4307 16
470 1I1Q TRP 0.001363 0.41636 18.75
471 2Q97 ATP 0.005801 0.41144 19.3798
472 2FOI JPA 0.001529 0.40583 20
473 4P5F AR6 0.000003407 0.4586 21.118
474 2V5E SCR 0.005745 0.43799 21.7822
475 2YBQ SAH 0.001289 0.43426 21.9178
476 2YBQ UP2 0.006563 0.42667 21.9178
477 2HFK E4H 0.001772 0.41768 24.7649
478 1GU3 BGC BGC BGC BGC BGC 0.003168 0.40773 26.1745
479 4I71 AGV 0.0000000003827 0.78291 33.5404
480 3EPW JMQ 0.00000000006468 0.61101 38.1988
Pocket No.: 2; Query (leader) PDB : 1YOE; Ligand: RIB; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1yoe.bio3) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1YOE; Ligand: RIB; Similar sites found: 200
This union binding pocket(no: 3) in the query (biounit: 1yoe.bio1) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3KPE TM3 0.0007896 0.47682 None
2 1S8F GDP 0.00738 0.40328 None
3 3L02 CP 0.00006089 0.41421 1.24224
4 3L02 SN0 0.00006089 0.41421 1.24224
5 2JBH 5GP 0.006044 0.41974 1.33333
6 1JCM 137 0.0002309 0.41057 1.5444
7 3PMA SCR 0.0218 0.40037 1.5444
8 2GWD GLU 0.003426 0.43013 1.5528
9 1ONX ASP 0.000003883 0.47063 1.86335
10 3CKZ ZMR 0.0000001864 0.44033 1.86335
11 1YBQ BDH 0.00001347 0.41963 1.86335
12 1CKN GTP 0.006233 0.41917 1.86335
13 4KCT FDP 0.005746 0.41161 1.86335
14 1FWY UD1 0.0001904 0.40184 1.86335
15 2OWZ F6P 0.00002778 0.40039 1.86335
16 4A8H PUW 0.0001386 0.41103 2.17391
17 3UXL CFI 0.00001123 0.40392 2.17391
18 1LTH FBP 0.000001232 0.607 2.19436
19 1LTH OXM 0.000008825 0.53087 2.19436
20 4M7F BM3 0.00003772 0.52042 2.21239
21 4TSK NDP 0.00005053 0.4622 2.48447
22 2ZI8 SDT 0.000003917 0.4613 2.48447
23 1U5R ATP 0.001379 0.42684 2.48447
24 3GTD MLI 0.01435 0.4131 2.48447
25 1JIL 485 0.001589 0.41234 2.48447
26 1VCO GLN 0.0003617 0.41158 2.48447
27 4CCO OGA 0.01783 0.40419 2.48447
28 4OE4 NAD 0.0003112 0.40094 2.48447
29 4JP3 CIT 0.000001827 0.44903 2.51046
30 1A8S PPI 0.0001815 0.47417 2.5641
31 43CA NPO 0.04821 0.42653 2.5641
32 2YDW WSH 0.002478 0.43093 2.61438
33 2J5S KTA 0.0004746 0.43488 2.6616
34 2QCX PF1 0.005604 0.4315 2.6616
35 2FR6 CTN 0.00008844 0.46082 2.73973
36 3V91 UPG 0.000001816 0.4017 2.74914
37 4IXW IXW 0.0109 0.40892 2.75591
38 1SJW NGV 0.000004487 0.42316 2.77778
39 1LDM OXM 0.0000242 0.51299 2.79503
40 3EE4 MYR 0.0006137 0.42262 2.79503
41 1H16 DTL 0.04943 0.40856 2.79503
42 1YHM AHD 0.02435 0.40271 2.79503
43 1LYX PGA 0.007801 0.40235 2.82258
44 1SQ5 ADP 0.007757 0.40643 2.92208
45 1WGC SIA GAL BGC 0.01682 0.44071 2.92398
46 4LBP 1WG 0.00004006 0.43237 3
47 1WNG SAH 0.003105 0.40225 3.01887
48 3D2Y AH0 ALA FGA LYS 0.0002271 0.44626 3.06513
49 4IEN GDP 0.0002796 0.4132 3.06748
50 1Z42 FMN 0.001713 0.43248 3.10559
51 4P87 4NP 0.0001049 0.42769 3.10559
52 1D3V ABH 0.0001816 0.42423 3.10559
53 3VOZ 04A 0.0004142 0.44158 3.1746
54 2WL9 MBD 0.00007965 0.43931 3.27869
55 1UAY ADN 0.008598 0.40071 3.30579
56 3UST FAD 0.006467 0.40164 3.37079
57 2NZ2 ASP 0.000004718 0.5596 3.41615
58 1V5F TPP 0.00135 0.45134 3.41615
59 1V5F FAD 0.00135 0.45134 3.41615
60 2Z5Y HRM 0.0001697 0.4144 3.41615
61 2NZ2 CIR 0.0003159 0.41334 3.41615
62 3BRE C2E 0.02542 0.40665 3.41615
63 3EM1 TYD 0.0001499 0.43268 3.42466
64 1LL2 UPG 0.001576 0.40877 3.6036
65 2ZO9 MLI 0.0002459 0.46886 3.64964
66 2GN2 C5P 0.00002168 0.48834 3.72671
67 2PP3 LGT 0.000001667 0.4342 3.72671
68 4E28 9MZ 0.007557 0.43126 3.72671
69 2XDQ MGX 0.02972 0.42026 3.72671
70 4E28 0MZ 0.01061 0.41903 3.72671
71 2IMP LAC 0.00001827 0.41627 3.72671
72 1E4E PHY 0.006787 0.40085 3.72671
73 4NVP 7CH 0.00006387 0.40092 3.82775
74 2JGS BTN 0.01946 0.40479 3.84615
75 1XMV ADP 0.00009006 0.44934 4.03727
76 4NAO AKG 0.01757 0.41964 4.03727
77 4IHQ ADP 0.006251 0.41912 4.03727
78 3A8U PLP 0.00007035 0.41288 4.03727
79 3MMR ABH 0.000887 0.40309 4.11622
80 2DVZ GLU 0.003139 0.42673 4.14013
81 3NJQ NJQ 0.000008381 0.46061 4.14508
82 3KMT SAH 0.0009873 0.43699 4.20168
83 1FNZ A2G 0.000003396 0.49315 4.21941
84 4C25 13P 0.0002224 0.41104 4.24528
85 4P9Z NMI PTR 02K ASN NH2 0.01383 0.40902 4.2735
86 3BHO B4P 0.01568 0.44237 4.32692
87 1PX8 XYP 0.000926 0.4666 4.34783
88 1TV5 A26 0.000101 0.44457 4.34783
89 1TV5 N8E 0.001006 0.42327 4.34783
90 1TV5 ORO 0.001984 0.4188 4.34783
91 1GJW GLC 0.03103 0.40762 4.34783
92 3W8S GSH 0.006672 0.4281 4.36893
93 1WKL ADP 0.0002195 0.44678 4.37956
94 4HE2 AMP 0.00001052 0.43948 4.43787
95 1J2Z SOG 0.004812 0.40455 4.44444
96 4DN8 BMA 0.00001023 0.56436 4.48718
97 5A2J ALA PRO ASP THR ARG PRO 0.02446 0.42147 4.5082
98 2V5K OXM 0.002388 0.42913 4.52962
99 2JE7 XMM 0.00000556 0.46595 4.60251
100 3ZZS TRP 0.000001482 0.4434 4.61538
101 1Y0L HAN 0.02156 0.43479 4.62963
102 3SQG COM 0.004385 0.4725 4.65839
103 4AF0 MOA 0.00001064 0.46677 4.65839
104 4LCQ URQ 0.00001437 0.44513 4.65839
105 1W7J ADP BEF 0.005309 0.40112 4.65839
106 3VGL BGC 0.00003591 0.43373 4.6729
107 1QDS PGA 0.003213 0.42632 4.78088
108 4IU0 ABH 0.0003215 0.428 4.84848
109 4JEJ 1GP 0.00632 0.40997 4.91803
110 3EJ0 11X 0.0009095 0.46363 4.96894
111 1FA2 DOM 0.000003913 0.46131 4.96894
112 2QS8 MET 0.000006852 0.45434 4.96894
113 3GD8 GOL 0.00001145 0.43403 4.96894
114 4A3R CIT 0.000006629 0.42997 4.96894
115 1E2S CSN 0.004038 0.4134 4.96894
116 1G6O ADP 0.0005873 0.40859 4.96894
117 3PLN U5P 0.01761 0.40443 4.96894
118 2DTJ THR 0.002527 0.43059 5.05618
119 1AUA BOG 0.004907 0.42864 5.06757
120 3V1V GST 0.002783 0.41138 5.08083
121 1V8K ANP 0.00002403 0.42965 5.2795
122 2TOH HBI 0.0002626 0.42303 5.2795
123 4C6F NCD 0.004166 0.42171 5.2795
124 4C6F DOR 0.004166 0.42171 5.2795
125 2UZ2 BTN 0.006109 0.40257 5.38462
126 3NOJ PYR 0.00125 0.45753 5.46218
127 2YP9 SIA CMO 0.002878 0.41282 5.59006
128 1KWK GAL 0.002347 0.41018 5.59006
129 2C9O ADP 0.00009642 0.40748 5.70175
130 2X61 NGA GAL SIA 0.00001232 0.48197 5.81395
131 3K3G MMU 0.0002581 0.48776 5.90062
132 3QV9 QV7 0.003118 0.44294 5.90062
133 3IB9 BTN 0.007735 0.44012 5.90062
134 1A59 COA 0.001181 0.4208 5.90062
135 3TFC PEP 0.01846 0.40354 5.90062
136 2ET1 GLV 0.0000126 0.40451 5.97015
137 1NXJ TLA 0.00001795 0.4944 6.01093
138 3I8T LBT 0.000005025 0.55841 6.09756
139 1CFV E3G 0.0004 0.41371 6.19469
140 1KDK DHT 0.001154 0.4097 6.21469
141 1XE7 GUN 0.01254 0.43992 6.40394
142 1ZJ6 G3D 0.002016 0.42967 6.41711
143 4AIG FLX 0.01191 0.40303 6.46766
144 1W55 C 0.0001599 0.43843 6.469
145 1ML4 PAL 0.0009568 0.40708 6.49351
146 4FUA PGH 0.00005443 0.43624 6.51163
147 3P3N AKG 0.002376 0.45462 6.52174
148 4QDF 30Q 0.0003891 0.40895 6.52174
149 5DTF 5CT 0.04906 0.4058 6.52174
150 1FX8 BOG 0.00007943 0.46776 6.76157
151 3VPQ GSH 0.006696 0.42803 6.86275
152 3ZF8 GDP 0.01067 0.40498 6.88525
153 1A5Z FBP 0.0001202 0.45121 6.89655
154 1QW9 KHP 0.00006576 0.43778 7.14286
155 2ZYF AKG 0.007204 0.41652 7.14286
156 3QP4 HL0 0.002765 0.4155 7.14286
157 3M0J OAF 0.00000455 0.44951 7.16612
158 1MVQ MMA 0.00002043 0.43061 7.20339
159 2ZJ5 ADP 0.003077 0.4432 7.45342
160 1JQN DCO 0.00003707 0.41518 7.45342
161 1TH8 ADP 0.01395 0.4002 7.75862
162 1SAZ ACP 0.004415 0.40994 7.76398
163 3CF6 SP1 0.006266 0.40215 7.76398
164 3KYF 5GP 5GP 0.001231 0.44334 7.79221
165 3CH5 GDP 0.0001316 0.40145 7.87037
166 1T10 F6P 0.00425 0.4369 8.38509
167 4Q3F TLA 0.0009029 0.47412 8.54701
168 4PB2 5UD 0.00009901 0.45908 8.69565
169 3HPF GAE 0.000002078 0.43963 8.69565
170 4MOB ADP 0.004025 0.40742 8.69565
171 2RHQ GAX 0.00147 0.40623 8.69565
172 1Z6K OAA 0.0001052 0.4837 8.87372
173 4QCK ASD 0.0002182 0.42179 9.00621
174 1UQX MMA 0.0000694 0.41451 9.73451
175 3WCS MAN NAG 0.0022 0.44378 9.84252
176 3WCS MAN NAG GAL 0.003814 0.42328 9.84252
177 1YOA FAD 0.001296 0.40803 10.0629
178 1FWE HAE 0.0003193 0.4735 10.3774
179 3VCA PRO 0.004693 0.43217 10.8696
180 2Q3M MLA 0.005503 0.45858 11.3497
181 3O7B SAH 0.003479 0.4041 11.4754
182 4Q3R XA2 0.00002831 0.44901 11.4907
183 4Q3S X7A 0.0000533 0.43454 11.4907
184 1JOT GAL A2G 0.00008008 0.49178 12.0301
185 1O7N IND 0.00006745 0.45036 12.3711
186 4AP9 1PS 0.00001832 0.47952 12.4378
187 1JH7 UVC 0.02549 0.40181 12.6984
188 1OMZ UD2 0.000001789 0.49433 12.9693
189 1QD0 RR6 0.009314 0.40327 13.2812
190 3EW2 BTN 0.01281 0.40596 13.3333
191 2HVK TBA 0.0001725 0.50746 13.7097
192 3O03 GCO 0.000004083 0.40638 13.7457
193 1UGX GAL MGC 0.00000437 0.45994 14.2857
194 1GXU 2HP 0.0008852 0.41349 15.3846
195 1YBH P22 0.00008895 0.41404 16.1491
196 1Y13 BIO 0.01238 0.40233 16.5746
197 4LKK SIA GAL 0.0001143 0.45685 18.4524
198 4PTZ FMN 0.003753 0.40663 18.8482
199 2WIC GNP 0.0006723 0.41195 32.2097
200 4PNO U5P 0.00145 0.43055 38.8889
Pocket No.: 4; Query (leader) PDB : 1YOE; Ligand: RIB; Similar sites found: 65
This union binding pocket(no: 4) in the query (biounit: 1yoe.bio4) has 17 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1EB9 HBA 0.001701 0.4326 None
2 1Q6O LG6 0.003922 0.4098 1.38889
3 4HZO COA 0.006353 0.42375 1.57233
4 2QV7 ADP 0.002688 0.41596 1.86335
5 1CKM GTP 0.01007 0.41038 1.86335
6 3O2K DST 0.01725 0.40483 1.86335
7 1NHZ 486 0.001073 0.41074 2.14286
8 1P9B HDA 0.007286 0.42637 2.17391
9 3A2Q ACA ACA 0.004337 0.40433 2.17391
10 4USS GSH 0.01781 0.40422 2.48447
11 2EJU SAH 0.004261 0.40096 2.48447
12 2VQ5 LDP 0.03545 0.41622 2.48756
13 1QB7 ADE 0.008139 0.40981 2.54237
14 1MZV AMP 0.01156 0.40355 2.55319
15 3FS8 TDR 0.006848 0.40179 2.5641
16 1RZM PEP 0.006635 0.42293 2.79503
17 2B7N NTM 0.009421 0.42135 2.9304
18 1IZC PYR 0.00000519 0.48708 3.10559
19 4CIB 7UZ 0.004275 0.43678 3.10559
20 1LCP PLU 0.0002223 0.42154 3.10559
21 1Z48 FMN 0.00699 0.40037 3.10559
22 1B74 DGN 0.04081 0.40711 3.14961
23 4HPP GLU 0.00002521 0.4163 3.41615
24 1FBL HTA 0.006222 0.41458 3.41615
25 4C0C WVH 0.001787 0.40274 3.41615
26 2Z9C FMN 0.002514 0.40543 3.5
27 2ZSC BTN 0.003654 0.41507 3.5461
28 1Q3P GLU ALA GLN THR ARG LEU 0.005278 0.42222 3.66972
29 1E4E ADP 0.004281 0.40089 3.72671
30 3OCZ SRA 0.004421 0.40403 3.81679
31 4R3L COA 0.006027 0.40092 4.04624
32 2DUA OXL 0.00003628 0.40388 4.13793
33 3RK0 AMP 0.007305 0.40747 4.21941
34 1WKL ATP 0.002357 0.41011 4.37956
35 1B5E DCM 0.01368 0.40474 4.47154
36 4AF0 IMP 0.0000004998 0.40749 4.65839
37 4I9A NCN 0.00003864 0.43282 4.86111
38 1X92 M7P 0.005316 0.41296 5.52764
39 3T1A 5MA 0.0007902 0.427 5.90062
40 1K27 MTM 0.00001416 0.43114 6.21118
41 2BJF DXC 0.000007896 0.40655 6.21118
42 2WA4 069 0.003974 0.41798 6.52174
43 4QDC ASD 0.0002204 0.41627 6.52174
44 3PC3 P1T 0.002781 0.40043 6.52174
45 1UFY MLI 0.0126 0.42092 6.55738
46 1FMB HYB 0.009809 0.40237 6.73077
47 5DS8 GLY 5CT GLY ALA 0.03544 0.41023 6.75676
48 3LST SAH 0.004486 0.41163 6.89655
49 3WUD GLC GAL 0.03438 0.4109 7.35294
50 3KJQ B94 0.001537 0.43434 7.36842
51 3I8P 840 0.006193 0.40235 7.45342
52 1QR0 COA 0.004039 0.42226 8.33333
53 1EJE FMN 0.003436 0.40429 8.33333
54 5DRN 5CT 0.01142 0.44584 8.7963
55 1XX6 ADP 0.01134 0.4039 8.90052
56 1JSH SIA GAL 0.000494 0.42185 9.09091
57 4NTX AMR 0.0006518 0.47001 9.2437
58 1T0I FMN 0.004325 0.40073 9.94764
59 1NNS ASP 0.01276 0.4018 10.559
60 1YGC 905 0.00197 0.4091 11.1111
61 1DUC DUD 0.001296 0.4135 13.4328
62 2FYU FDN 0.002419 0.40971 14.1026
63 1D09 PAL 0.002313 0.43175 16.9935
64 1N9L FMN 0.002514 0.40912 17.4312
65 2HV8 GTP 0.001408 0.4001 18.6047
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