Receptor
PDB id Resolution Class Description Source Keywords
1YNI 2.2 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE MONTREAL-KINGSTON BACTERIAL STRUCTURAL GENOMICS INITIATIVE BSGI STRUCTURAL GENOMICS
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
K A:2001;
B:2002;
C:2003;
D:2004;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
39.098 K [K+]
SUG A:1001;
B:1002;
C:1003;
D:1004;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
274.274 C10 H18 N4 O5 C(C[C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1YNH 1.95 Å EC: 3.-.-.- CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE, ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE A RGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI ESCHERICHIA COLI SUCCINYLARGININE DIHYDROLASE
Ref.: CRYSTAL STRUCTURE OF N-SUCCINYLARGININE DIHYDROLASE ASTB, BOUND TO SUBSTRATE AND PRODUCT, AN ENZYME FROM THE ARGININE CATABOLIC PATHWAY OF ESCHERICHIA COLI. J.BIOL.CHEM. V. 280 15800 2005
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 312 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 261 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 1YNH - SUO C9 H16 N2 O5 C(C[C@@H](....
2 1YNI - SUG C10 H18 N4 O5 C(C[C@@H](....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: SUG; Similar ligands found: 16
No: Ligand ECFP6 Tc MDL keys Tc
1 SUG 1 1
2 SUO 0.612245 0.825
3 AAG 0.6 0.880952
4 NSK 0.588235 0.804878
5 CMA 0.566038 0.860465
6 2W2 0.555556 0.925
7 SN0 0.52 0.651163
8 M3R 0.509091 0.692308
9 6DB 0.490909 0.833333
10 SMG 0.481481 0.652174
11 L06 0.425926 0.72093
12 GVA 0.42 0.756098
13 OLN 0.418182 0.813953
14 G3M 0.418182 0.790698
15 SF8 0.412698 0.66
16 KSN 0.403509 0.731707
Similar Ligands (3D)
Ligand no: 1; Ligand: SUG; Similar ligands found: 1
No: Ligand Similarity coefficient
1 BAG 0.9021
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1ynh.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: 1
This union binding pocket(no: 3) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 6JV0 ORN 3.31126
Pocket No.: 4; Query (leader) PDB : 1YNH; Ligand: SUO; Similar sites found with APoc: 1
This union binding pocket(no: 4) in the query (biounit: 1ynh.bio2) has 26 residues
No: Leader PDB Ligand Sequence Similarity
1 6JV0 ORN 3.31126
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