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Receptor
PDB id Resolution Class Description Source Keywords
1Y3A 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF G-ALPHA-I1 BOUND TO A GDP-SELECTIVE PEPTIDE PROVIDES INSIGHT INTO GUANINE NUCLEOTIDE EXCHANGE HOMO SAPIENS PROTEIN-PEPTIDE COMPLEX SIGNALING PROTEIN
Ref.: STRUCTURE OF G-ALPHA-I1 BOUND TO A GDP-SELECTIVE PEPTIDE PROVIDES INSIGHT INTO GUANINE NUCLEOTIDE EXCHANGE STRUCTURE V. 7 1069 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:355;
B:356;
C:357;
D:358;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1Y3A 2.5 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF G-ALPHA-I1 BOUND TO A GDP-SELECTIVE PEPTIDE PROVIDES INSIGHT INTO GUANINE NUCLEOTIDE EXCHANGE HOMO SAPIENS PROTEIN-PEPTIDE COMPLEX SIGNALING PROTEIN
Ref.: STRUCTURE OF G-ALPHA-I1 BOUND TO A GDP-SELECTIVE PEPTIDE PROVIDES INSIGHT INTO GUANINE NUCLEOTIDE EXCHANGE STRUCTURE V. 7 1069 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 1Y3A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1Y3A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 1Y3A - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1Y3A; Ligand: GDP; Similar sites found with APoc: 621
This union binding pocket(no: 1) in the query (biounit: 1y3a.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 1GXU 2HP None
2 1TUK PGM None
3 2QQC AG2 None
4 2VWT PYR 0.749064
5 4PPF FLC 0.911854
6 5KSP GDP 1.05263
7 4QOS ADP 1.13208
8 1SVM ATP 1.21581
9 1W5T ANP 1.21581
10 1W5T ADP 1.21581
11 2W58 ADP 1.48515
12 3WYA GDP 1.51976
13 3WY9 GDP 1.51976
14 1TQ4 GDP 1.51976
15 4H1V GNP 1.51976
16 5TSH ADP 1.51976
17 5TSH ANP 1.51976
18 3T34 GDP 1.51976
19 3IO3 ADP 1.51976
20 1X6V ADP 1.51976
21 2B8W ALF 5GP 1.52439
22 1NST A3P 1.53846
23 2CBZ ATP 1.68776
24 3BD9 A3P 1.78571
25 5W7Q GDP 1.82371
26 2Y65 ADP 1.82371
27 3COB ADP 1.82371
28 4P4T GDP 1.82371
29 4XGU ADP 1.82371
30 5M7P ADP 1.82371
31 4NE2 ADP 1.82371
32 4NE2 SH2 1.82371
33 2O0J ADP 1.82371
34 1NN5 2DT 1.86047
35 1NN5 ANP 1.86047
36 5NM7 GLY 1.8797
37 3TK1 GDP 2.12766
38 3EZ2 ADP 2.12766
39 2ZFI ADP 2.12766
40 2GKS ADP 2.12766
41 4LJ9 ACP 2.12766
42 2C9O ADP 2.12766
43 5I34 GDP 2.12766
44 2ZPA ADP 2.12766
45 3L6C MLI 2.12766
46 3ITJ CIT 2.12766
47 4IOK ADP 2.12766
48 4IOK XPO 2.12766
49 3ZQ6 ADP ALF 2.16049
50 4RZ3 ADP 2.37288
51 1Z2A GDP 2.38095
52 4WZ6 ATP 2.41379
53 2XT3 ADP 2.43161
54 6A20 ADP 2.43161
55 1G6O ADP 2.43161
56 5ZBR ANP 2.43161
57 2OBM ADP 2.43161
58 5Y6N ADP 2.43161
59 5AK0 8V1 2.43161
60 4ZG4 VO4 ADP 2.43161
61 1R0X ATP 2.44755
62 1BG2 ADP 2.46154
63 5K2M ADP 2.5641
64 1A4R GNH 2.6178
65 2NGR GDP 2.6178
66 1A4R GDP 2.6178
67 2WMO GTP 2.63158
68 4DDY DN6 2.6616
69 2Z5F A3P 2.68456
70 2GWH A3P 2.68456
71 3Q9L ATP 2.69231
72 2QQ0 ANP 2.71739
73 2QQ0 TMP 2.71739
74 2QQ0 ADP 2.71739
75 2QQ0 THM 2.71739
76 2RCN GDP 2.73556
77 3EC1 GDP 2.73556
78 3DZD ADP 2.73556
79 5LB3 ADP 2.73556
80 1YTM ATP 2.73556
81 4IDN GNP 2.73556
82 2BIF ANP 2.73556
83 2BIF SIN 2.73556
84 1E2K TMC 2.73556
85 2Q2Y MKR 2.73556
86 2Q2Y ADP 2.73556
87 5Z69 AGS 2.73556
88 2PEZ DAT 2.7933
89 2PEZ GGZ 2.7933
90 3VGL BGC 2.80374
91 3BER AMP 2.81124
92 3MKN DNB 2.8481
93 3P4X ADP 2.90557
94 3FKQ ATP 2.94906
95 1GRN GDP 2.95567
96 1U0J ADP 2.99625
97 5ZB0 ADP 3.0303
98 5ZB0 TYD 3.0303
99 2VVG ADP 3.03951
100 1G7S GDP 3.03951
101 3DC4 ADP 3.03951
102 1V8K ANP 3.03951
103 4LYA ATP 3.03951
104 1G41 ADP 3.03951
105 2FAH GDP 3.03951
106 3RC3 ANP 3.03951
107 1D8C SOR 3.03951
108 5Y0T TAT 3.03951
109 2Q8M AMP 3.03951
110 3BFX A3P 3.04054
111 2PZE ATP 3.05677
112 5HCN GCP 3.06513
113 5UIV ADP 3.0837
114 2BEK ATP 3.11284
115 3H86 AP5 3.125
116 5H4S RAM 3.16901
117 4D81 ADP 3.18021
118 3FWY ADP 3.18471
119 1NJF ADP 3.2
120 1NJF AGS 3.2
121 1B7T ADP 3.20513
122 6B8B ADP 3.21285
123 4DID GDP 3.28947
124 5M04 GDP 3.34347
125 1T5C ADP 3.34347
126 3LRE ADP 3.34347
127 1F76 ORO 3.34347
128 5ZXD ATP 3.34347
129 2QEN ADP 3.34347
130 1IN4 ADP 3.34347
131 4IEE AGS 3.34347
132 3TBK ANP 3.34347
133 4PFO ADP 3.34347
134 2CDC XYS 3.34347
135 1XP8 AGS 3.34347
136 1CT9 GLN 3.34347
137 4U8P UDP 3.34347
138 5GOP FRU 3.34347
139 5URY PAM 3.42466
140 1YRB GDP 3.43511
141 2QZ4 ADP 3.43511
142 3B7G ANP 3.47826
143 2GJ8 ALF GDP 3.48837
144 3UIE ANP 3.5
145 5TIV A3P 3.55731
146 1SQ5 ADP 3.57143
147 4Q1A 2XZ 3.57143
148 4Q1A UDP 3.57143
149 1KK8 BEF ADP 3.59712
150 4WEI GLC GAL 3.61011
151 5H7J GCP 3.64742
152 5H7K GDP 3.64742
153 1GOJ ADP 3.64742
154 4IHQ ADP 3.64742
155 1OXV ANP 3.64742
156 5IFS ADP 3.64742
157 1QF5 RPL 3.64742
158 1QF5 GDP 3.64742
159 4KVA GTP 3.64742
160 1RJW ETF 3.64742
161 3HU3 AGS 3.64742
162 1NY5 ADP 3.64742
163 4HSE ADP 3.64742
164 3FVQ ATP 3.64742
165 2VVM PRO 3.64742
166 1I0B PEL 3.64742
167 4HE2 AMP 3.64742
168 1QHG ATP 3.64742
169 1VHT BA3 3.66972
170 3TMK T5A 3.7037
171 4PX9 ADP 3.76712
172 2OFW ADX 3.84615
173 4FCW ADP 3.85852
174 3A1S GDP 3.87597
175 3NHB ADP 3.92157
176 4JLS 3ZE 3.94737
177 3MD0 GDP 3.95137
178 3A4M ADP 3.95137
179 1YQT ADP 3.95137
180 4NCN GTP 3.95137
181 5YV5 ADP 3.95137
182 4TMZ GSP 3.95137
183 1IHU AF3 3.95137
184 1IHU ADP 3.95137
185 1P9B GDP 3.95137
186 1OYY AGS 3.95137
187 2NCD ADP 3.95137
188 2ZTS ADP 3.98406
189 3QXY SAM 4.00891
190 1AQU A3P 4.0404
191 4R98 GNH 4.05904
192 1H65 GDP 4.07407
193 3DKP ADP 4.08163
194 5X40 ACP 4.10959
195 2WIC GNP 4.11985
196 3REF GDP 4.12371
197 4NON GDP 4.23077
198 1D2E GDP 4.25532
199 4YJ1 ADP 4.25532
200 3EWA ANP 4.25532
201 2FNA ADP 4.25532
202 5VGR GDP 4.25532
203 5HR5 ADP 4.25532
204 5L2R MLA 4.25532
205 4PJ3 ANP 4.25532
206 1GQY ACP 4.25532
207 3QKT ANP 4.25532
208 4V03 ADP 4.28016
209 1G6H ADP 4.28016
210 2V2G BEZ 4.29185
211 4GOX A3P 4.47284
212 3GD8 GOL 4.4843
213 5W76 GDP 4.55927
214 2AWN ADP 4.55927
215 1IWE IMP 4.55927
216 6DEF GCP 4.55927
217 5MZN ADP 4.55927
218 2JLR ANP 4.55927
219 2FSH ANP 4.55927
220 4OHY ANP 4.55927
221 4LHD GLY 4.55927
222 1S3G AP5 4.60829
223 5EXT ADP 4.61538
224 1W7J ADP BEF 4.63576
225 4GBM A3P 4.64396
226 2WJH FLC 4.81928
227 2WJH GDP 4.81928
228 3VX3 ADP 4.83871
229 4LC1 GDP 4.86322
230 2C77 GNP 4.86322
231 2C78 GNP 4.86322
232 2CE7 ADP 4.86322
233 5WC2 ADP 4.86322
234 1P72 ADP 4.86322
235 4ZDJ UTP 4.86322
236 2CHG ANP 4.86726
237 4HI0 GDP 4.90566
238 3B5J 12D 4.93827
239 1JI0 ATP 5
240 1DKU AP2 5.04732
241 1ONI BEZ 5.07246
242 4DKX GDP 5.09259
243 1G3M PCQ 5.10204
244 1G3M A3P 5.10204
245 1L2T ATP 5.10638
246 1UJ2 C5P 5.15873
247 1UJ2 ADP 5.15873
248 3BFV ADP 5.16605
249 1MKY GDP 5.16717
250 3VMF GTP 5.16717
251 1WDT GTP 5.16717
252 3ZFD ANP 5.16717
253 5N69 ADP 5.16717
254 2XAU ADP 5.16717
255 4KBF AMP 5.16717
256 4R2I ANP 5.2381
257 5MEX PAP 5.2795
258 5MEX SZZ 5.2795
259 5BQ5 ADP BEF 5.29101
260 2HF9 GSP 5.30973
261 4WOP CTP 5.33333
262 1JJ7 ADP 5.38462
263 3CV2 OXL 5.47112
264 2CDN ADP 5.47264
265 4X8O AP5 5.60748
266 3TKL GTP 5.61225
267 5J1J ANP 5.61404
268 2IYL GDP 5.6338
269 4YDS ATP 5.70175
270 4U00 ADP 5.7377
271 1CR1 TTP 5.74324
272 1KK1 GNP 5.77508
273 1XMV ADP 5.77508
274 5KSZ GCP 5.77508
275 4UP4 GAL NAG 5.77508
276 4E03 ADP 5.82524
277 3KJI ADP 5.90551
278 1AKY AP5 5.90909
279 2PL3 ADP 5.9322
280 1YZN GNP 5.94595
281 1VKJ A3P 5.96491
282 2KIN ADP 6
283 3FB4 AP5 6.01852
284 2F9L GDP 6.03015
285 3SFV GDP 6.07735
286 4ZKD GDP 6.07903
287 4R43 GDP 6.07903
288 2DPY ADP 6.07903
289 3VM7 GLC 6.07903
290 6B4K ANP 6.07903
291 5LV1 78T 6.07903
292 5O74 GDP 6.11111
293 4KFU ACP 6.13208
294 2Y8E GNP 6.14525
295 1OIV GDP 6.28272
296 1OIX GDP 6.28272
297 3NKV GNP 6.28571
298 1KO8 6PG 6.28571
299 1RRC ADP 6.31229
300 4LHW GNP 6.32184
301 3TNF GNP 6.32184
302 3QBT GNP 6.32184
303 1HTW ADP 6.32911
304 1Z06 GNP 6.34921
305 3W5J GDP 6.37255
306 1SKQ GDP 6.38298
307 2WJG GDP 6.38298
308 5FG3 GDP 6.38298
309 5YT0 GDP 6.38298
310 4RD0 GDP 6.38298
311 1UKZ ADP 6.40394
312 2FFQ GSP 6.43275
313 1ZIN AP5 6.45161
314 2EW1 GNP 6.46766
315 1YZQ GNP 6.47059
316 3RWO GDP 6.48649
317 3CNL GNP 6.48855
318 3RAB GNP 6.50888
319 1M7G AV2 6.63507
320 1M7G ADX 6.63507
321 1M7G ADP 6.63507
322 5BN3 ADP 6.68693
323 5FTB ANP 6.68693
324 5FHD ADP ALF 6.68693
325 5LTJ ADP 6.68693
326 1K6M AGS 6.68693
327 3RLF ANP 6.68693
328 4JDR FAD 6.68693
329 5K5Z ANP 6.6879
330 1DAK DPU 6.69643
331 1DAK ADP 6.69643
332 5JCZ GDP 6.70391
333 1Z0F GDP 6.70391
334 2OZE AGS 6.71141
335 1DCP HBI 6.73077
336 1VG8 GNP 6.76329
337 2RGX AP5 6.79612
338 1JJV ATP 6.79612
339 2D2F ADP 6.8
340 4MKF AP5 6.91244
341 2HV8 GTP 6.97674
342 4TTQ ATP 6.97674
343 5GOE GDP 6.99088
344 1LVK MNT BEF 6.99088
345 5UWP GNP 6.99301
346 6CIT GNP 6.99301
347 5DIF GNP 6.99301
348 5UWW GNP 6.99301
349 5UWI GNP 6.99301
350 5DHF GNP 6.99301
351 5UWJ GNP 6.99301
352 5UWH GNP 6.99301
353 5UWT GNP 6.99301
354 5DI9 GNP 6.99301
355 5XKT GNP 7
356 5UPK GNP 7.02703
357 1LVG ADP 7.07071
358 5G3Y ADP 7.07965
359 5G41 AP5 7.17489
360 2EFE GNH 7.18232
361 2D7C GTP 7.18563
362 3GJ3 GDP 7.23982
363 3GJ0 GDP 7.23982
364 2XTN GTP 7.26496
365 4B47 GDP 7.29483
366 1F9V ADP 7.29483
367 3DEF GDP 7.29483
368 6C90 ADP 7.29483
369 4ZNL BEF ADP 7.29927
370 4MKG AP5 7.37327
371 5BXQ GDP 7.40741
372 4HAT GNP 7.40741
373 1D5C GDP 7.40741
374 1IBR GNP 7.40741
375 4LPS GDP 7.43802
376 1YOE RIB 7.45342
377 4YMU ATP 7.5
378 1TU3 GNP 7.60234
379 4QM7 GTP 7.60234
380 2YOH WMJ 7.61905
381 1R2Q GNP 7.64706
382 1EK0 GNP 7.64706
383 3Q85 GNP 7.69231
384 3MJH GTP 7.7381
385 5N1P 8GK 7.76699
386 1QHH ATP 7.82609
387 3QXC ATP 7.85124
388 3IUY AMP 7.89474
389 4YC7 GNP 7.90274
390 4XVU ATP 7.90274
391 2WOJ ADP ALF 7.90274
392 1S8F GDP 7.9096
393 4ITR GDP 7.91139
394 5OCG GNP 7.93651
395 5XC5 GTP 7.95455
396 4BQS ADP 7.95455
397 4BQS K2Q 7.95455
398 5U32 GDP 8.05085
399 1D2N ANP 8.08823
400 4KVG GTP 8.33333
401 4CVN ADP 8.37696
402 1CLU DBG 8.43373
403 5IRR GSP 8.44156
404 5SZH GNP 8.49673
405 2WKQ GTP 8.51064
406 1R6B ADP 8.51064
407 2HT6 GDP 8.62069
408 1OFH ADP 8.62069
409 1F2U ATP 8.72483
410 5H67 ATP 8.75
411 1QF9 C5P 8.76289
412 1QF9 ALF 8.76289
413 1QF9 ADP 8.76289
414 4AG5 ADP 8.81459
415 4FRZ ADP 8.81459
416 1T0S BML 8.81459
417 4JLV ADP 8.92193
418 1ZUI SKM 8.92857
419 1GUA GNP 8.98204
420 4HDO GNP 8.98204
421 4HDQ GNP 8.98204
422 3X1Z GNP 8.98204
423 3E5H GNP 8.98876
424 4U5X GNP 8.98876
425 3FYH ADP 9.00621
426 5IRN ADP 9.11854
427 4DVR 0LY 9.26518
428 5WDR GNP 9.35672
429 2CJW GDP 9.375
430 5JCP GDP ALF 9.42249
431 5E5U MLI 9.54774
432 1WF3 GNP 9.63455
433 1Z83 AP5 9.69388
434 3BC1 GNP 9.74359
435 2ZX2 RAM 9.74359
436 5GVR LMR 9.82906
437 2BCG GDP 10.0304
438 4LX0 BEF GDP 10.0304
439 4TQK NAG 10.0304
440 4NU0 AP5 10.1382
441 1NF3 GNP 10.1562
442 1W0J ADP 10.2941
443 2CK3 ANP 10.2941
444 2V7Q ATP 10.2941
445 1W0J ADP BEF 10.2941
446 2V7Q ADP 10.2941
447 2CK3 ADP 10.2941
448 3CPJ GDP 10.3139
449 2ZEJ GDP 10.3261
450 1YXM ADE 10.5611
451 5W75 GDP 10.6383
452 4DCT GDP 10.6383
453 2WHX ADP 10.6383
454 6FA4 GNP 10.9422
455 2GDJ ANP 10.9848
456 2A5J GDP 10.9948
457 5WLB GNP 11.2462
458 5O2T GSP 11.2462
459 2GK6 ADP 11.2462
460 1FP6 ADP 11.4187
461 6FAA ADP 11.5502
462 2IXE ATP 11.8081
463 3H4S ADP 11.8519
464 1VG1 GDP 11.8919
465 1BO4 COA 11.9048
466 4WZA ACP 11.9565
467 4WZA ADP 11.9565
468 3KTA AP5 12.0879
469 1XEX ATP 12.0879
470 6D5E GNP 12.462
471 6D5H GNP 12.462
472 6D5J GNP 12.462
473 6BVJ GNP 12.462
474 5E95 GDP 12.462
475 6BVK GNP 12.462
476 6D5G GNP 12.462
477 1WQ1 GDP 12.462
478 2UZI GTP 12.462
479 1NVV GNP 12.462
480 3DDC GNP 12.462
481 6D5L GNP 12.462
482 6D55 GNP 12.462
483 6BVL GNP 12.462
484 6BVI GNP 12.462
485 6D5M GNP 12.462
486 6D56 GNP 12.462
487 6D59 GNP 12.462
488 6BVM GNP 12.462
489 5UQW GDP 12.462
490 6D5V GNP 12.462
491 1WQ1 AF3 12.462
492 5Z2M GTP 12.5
493 1XX6 ADP 12.5654
494 1KY3 GDP 12.6374
495 2C5L GTP 12.8205
496 1B0U ATP 12.9771
497 3QVV A3P 13.2203
498 3QVV 3QV 13.2203
499 1NRJ GTP 13.7615
500 1RYH GNP 13.7931
501 5XDR ADP 13.9818
502 1KMQ GNP 14.1304
503 1XKV ATP 14.2857
504 4XOI GTP 14.4444
505 3Q72 GNP 14.4578
506 3ZIA ATP 14.4928
507 3ZIA ADP 14.4928
508 4BAS GNP 14.5729
509 3WYF GTP 14.6119
510 3KUD GDP 14.8148
511 4C4P GNP 14.9533
512 5UWU GNP 15
513 3GJ7 GDP 15.3846
514 3GJ4 GDP 15.3846
515 3GJ5 GDP 15.3846
516 3GJ8 GDP 15.3846
517 4TL6 ANP 15.8103
518 4D0G GTP 15.942
519 1OW3 GDP 16.0622
520 2IS6 ADP 16.1094
521 1Y63 ADP 16.3043
522 5IRC GDP 16.6667
523 1OS1 PYR 16.7173
524 1OS1 ATP 16.7173
525 4D0N GDP 16.7568
526 5HPY GDP 16.7568
527 3LXR GDP 16.7568
528 6BCA GSP 16.7568
529 6BC0 GSP 16.7568
530 1CXZ GSP 17.033
531 4XSH GSP 17.3184
532 3BOS CDP 17.3554
533 1TX4 ALF GDP 17.5141
534 3WYG GTP 17.5824
535 3T1O GDP 17.6768
536 3T12 GDP ALF 17.6768
537 3IIJ ADP 17.7778
538 1SVI GDP 17.9487
539 1LFD GNP 18.3908
540 4ZI2 GNP 18.4211
541 4M9Q GNP 18.5022
542 4GOJ GNP 18.5185
543 5UWR GNP 18.5185
544 3LN9 FLC 18.705
545 6G14 G4P 18.7075
546 5I0H ADP BEF 18.75
547 4XTR ATP 18.9189
548 4XTR ADP 18.9189
549 2GCO GNP 19.403
550 2GCN GDP 19.403
551 2D7D ADP 20
552 1ZJ6 G3D 20.3209
553 6BCB GSP 20.5479
554 3DOE GTP 20.8333
555 4OI4 ATP 20.8696
556 5DI3 GNP 21.0811
557 5LEF GTP 21.2121
558 1KSH GDP 21.5054
559 3T5G GDP 21.7105
560 5TB5 GDP 22
561 5TAR GDP 22.2973
562 1YZG GDP 22.3464
563 5UWQ GNP 22.7273
564 4V0K GDP 23.0769
565 1ZD9 GDP 23.4043
566 1M2O GNP 23.6842
567 5KUT GDP 23.8095
568 2X77 GDP 24.8677
569 1Z0A GDP 25
570 1F6B GDP 25.2525
571 1UPT GTP 25.731
572 2BME GNP 25.8065
573 2VB6 ADP BEF 26.1745
574 3ZS9 ADP ALF 26.3158
575 5EE5 GTP 26.9006
576 2QTV GNP 26.9461
577 3AQ4 GDP 27.1739
578 4YLG GDP 27.7457
579 1VG9 GDP 27.9635
580 1VG0 GDP 27.9635
581 2A5F GTP 28
582 2J59 GTP 28.3133
583 1O3Y GTP 28.3133
584 1J2J GTP 28.3133
585 4KAX GTP 28.4024
586 1R4A GNP 28.4848
587 2W83 GTP 29.0909
588 1RE0 GDP 29.2683
589 1S9D GDP 29.2683
590 3SBD GNP 29.4118
591 3N5C GDP 30.2469
592 3PCR GTP 30.2469
593 2FJU GSP 30.8989
594 2A9K GDP 31.25
595 1UAD GNP 31.25
596 1DAR GDP 31.25
597 1Z08 GNP 31.25
598 1Z6T ADP 31.25
599 4A4Z ANP 31.25
600 5J1S ATP 31.25
601 2J0V GDP 32.5472
602 1Z0K GTP 33.1395
603 5OEC GDP 34.4262
604 2VOH CIT 34.6154
605 4J0Q GDP 37.5
606 2G77 GDP 37.5
607 1YVD GNP 37.5
608 3GJX GTP 37.5
609 3WXM GTP 37.5
610 2ZR9 DTP 37.5
611 2G77 AF3 37.5
612 3QF7 ANP 37.5
613 5VHC BEF ADP 37.5
614 2W2X GSP 38.7097
615 5UWS GNP 40.9091
616 1G7C 5GP 43.75
617 1WA5 GTP 43.75
618 5H68 AGS 43.75
619 6H5E ANP 43.75
620 2QN6 GDP 44.4444
621 5UWO GNP 45
622 4P3Y GDP 50
623 3U6B GDP 50
624 2HCJ GDP 50
625 5JBQ GDP 50
626 1D8T GDP 50
627 3U6K GDP 50
628 2BVN GNP 50
629 4PC3 GDP 50
630 4G5G GDP 50
631 3PQC GDP 50
632 1Z0J GTP 50
633 5MVR ADP 50
634 2QG6 NMN 50
635 2ZJ5 ADP 50
636 1V59 FAD 50
Pocket No.: 2; Query (leader) PDB : 1Y3A; Ligand: GDP; Similar sites found with APoc: 12
This union binding pocket(no: 2) in the query (biounit: 1y3a.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
1 2J5V PCA 1.51976
2 1SQL GUN 2.05479
3 4BFW ZVW 3.14465
4 2GU8 796 3.34347
5 1A5Z FBP 3.76176
6 5DNC ASN 3.95137
7 1NHX FTB 3.95137
8 1RV0 NDG 5.625
9 6GVZ CHO 5.90164
10 5LTJ BEF 6.68693
11 3B12 FAH 10.5263
12 3GDN HBX 11.8541
Pocket No.: 3; Query (leader) PDB : 1Y3A; Ligand: GDP; Similar sites found with APoc: 19
This union binding pocket(no: 3) in the query (biounit: 1y3a.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
1 4OOE FOM 1.82371
2 2Z3Y F2N 2.12766
3 5HZ7 BGC 2.12766
4 5AHM IMP 2.12766
5 5WRJ A3P 2.31023
6 5GZ9 MAN 2.95082
7 1KC7 PPR 3.34347
8 2ORV 4TA 3.84615
9 5BYK A3P 3.861
10 5BYK OAQ 3.861
11 1NHX PEP 3.95137
12 2GMV UN8 3.95137
13 5NC9 8SZ 4.45344
14 5WHU SIA GAL GLC 6.04027
15 1W4R TTP 6.99088
16 1XPJ TLA 7.14286
17 1U4L H1S 7.35294
18 1IZC PYR 10.0304
19 2ZPT A3P 31.25
Pocket No.: 4; Query (leader) PDB : 1Y3A; Ligand: GDP; Similar sites found with APoc: 17
This union binding pocket(no: 4) in the query (biounit: 1y3a.bio1) has 24 residues
No: Leader PDB Ligand Sequence Similarity
1 2V5K OXM 2.09059
2 5WRI A3P 2.1875
3 5AZC PGT 2.33333
4 4B5W PYR 2.34375
5 5LQ8 GB 2.48227
6 1PSC EBP 2.73556
7 2H7C SIA 2.73556
8 4JF5 FLC 2.88066
9 4MDB RLT 3.11111
10 1P3D ANP 3.64742
11 1OJ4 ANP 3.88693
12 4QDI ATP 3.95137
13 3KC1 2T6 6.99088
14 1TL2 NDG 7.62712
15 3VSV XYP 9.72644
16 1T8U A3P 12.5
17 3VSE SAH 43.75
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