Receptor
PDB id Resolution Class Description Source Keywords
1WDD 1.35 Å EC: 4.1.1.39 CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2 CARBOXYARABINITOL-1,5-BISPHOSPHATE ORYZA SATIVA JAPONICA GROUP RUBISCO PHOTOSYNTHESIS ALPHA/BETA BARREL N-METHYLMETHIONITRANSLATIONAL MODIFICATION LYASE
Ref.: CRYSTAL STRUCTURE OF RICE RUBISCO AND IMPLICATIONS ACTIVATION INDUCED BY POSITIVE EFFECTORS NADPH AND 6-PHOSPHOGLUCONATE J.MOL.BIOL. V. 422 75 2012
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CAP A:1001;
E:2001;
Valid;
Valid;
none;
none;
submit data
356.115 C6 H14 O13 P2 C([C@...
GOL A:3001;
A:3004;
A:3006;
A:3010;
A:3012;
A:3015;
A:3017;
E:3002;
E:3003;
E:3005;
E:3009;
E:3011;
E:3013;
E:3014;
E:3016;
W:3007;
W:3008;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MG A:1476;
E:2476;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1WDD 1.35 Å EC: 4.1.1.39 CRYSTAL STRUCTURE OF ACTIVATED RICE RUBISCO COMPLEXED WITH 2 CARBOXYARABINITOL-1,5-BISPHOSPHATE ORYZA SATIVA JAPONICA GROUP RUBISCO PHOTOSYNTHESIS ALPHA/BETA BARREL N-METHYLMETHIONITRANSLATIONAL MODIFICATION LYASE
Ref.: CRYSTAL STRUCTURE OF RICE RUBISCO AND IMPLICATIONS ACTIVATION INDUCED BY POSITIVE EFFECTORS NADPH AND 6-PHOSPHOGLUCONATE J.MOL.BIOL. V. 422 75 2012
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 20 families.
1 1WDD - CAP C6 H14 O13 P2 C([C@H]([C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1WDD - CAP C6 H14 O13 P2 C([C@H]([C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 1WDD - CAP C6 H14 O13 P2 C([C@H]([C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: CAP; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 CAP 1 1
2 XDP 0.543478 0.945946
3 DEZ 0.434783 0.918919
4 DER 0.434783 0.918919
5 4TP 0.416667 0.772727
6 R10 0.408163 0.918919
7 PA5 0.408163 0.918919
8 HG3 0.404762 0.810811
Similar Ligands (3D)
Ligand no: 1; Ligand: CAP; Similar ligands found: 6
No: Ligand Similarity coefficient
1 XBP 0.9050
2 RUB 0.8822
3 IR8 0.8758
4 AHG 0.8707
5 PAZ 0.8646
6 UMP 0.8564
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 1WDD; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1wdd.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
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