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Receptor
PDB id Resolution Class Description Source Keywords
1VG9 2.5 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH TERMINALLY TRUNCATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BIPROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP B:2302;
D:2300;
F:2305;
H:2303;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
K B:3303;
D:3305;
F:3307;
H:3309;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
39.098 K [K+]
MG B:2307;
D:2301;
F:2306;
H:2304;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
P33 B:3302;
D:3304;
F:3306;
H:3308;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
326.383 C14 H30 O8 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VG9 2.5 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH TERMINALLY TRUNCATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BIPROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 175 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found with APoc: 556
This union binding pocket(no: 1) in the query (biounit: 1vg9.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4PX9 ADP 2.05479
2 6AIC AMP 2.33645
3 2ZE7 AMP 2.37154
4 2ZE7 DST 2.37154
5 2ZPA ADP 2.46154
6 2HF9 GSP 2.65487
7 3R7F CP 2.7027
8 3WYA GDP 2.76498
9 1UJ2 ADP 2.77778
10 1UJ2 C5P 2.77778
11 5TSH ADP 3.07692
12 5TSH ANP 3.07692
13 1NST A3P 3.07692
14 2WHX ADP 3.24324
15 5XDR ADP 3.24324
16 5M7P ADP 3.24324
17 5Z69 AGS 3.24324
18 5BYK OAQ 3.24324
19 5BYK A3P 3.24324
20 1PVN MZP 3.24324
21 4UTG ANP 3.24324
22 1QF5 RPL 3.24826
23 1QF5 GDP 3.24826
24 2J5V PCA 3.26975
25 4AVB ACO 3.3033
26 5Y6N ADP 3.42466
27 1T5C ADP 3.4384
28 2D2F ADP 3.6
29 4V24 GYR 3.77358
30 3MD0 GDP 3.78378
31 5ZBR ANP 3.78378
32 3IO3 ADP 3.78378
33 2IS6 ADP 3.78378
34 5G41 AP5 3.78378
35 2FAH GDP 3.78378
36 3RC3 ANP 3.78378
37 3B8Y ADA ADA ADA ADA 3.78378
38 3FWY ADP 3.82166
39 1H65 GDP 4.07407
40 5K5Z ANP 4.14013
41 1S3G AP5 4.14747
42 1GOJ ADP 4.22535
43 3FKQ ATP 4.28954
44 5U32 GDP 4.32432
45 2DPY ADP 4.32432
46 3VX3 ADP 4.32432
47 1V8K ANP 4.32432
48 1ZIN AP5 4.32432
49 3FYH ADP 4.32432
50 2GKS ADP 4.32432
51 4BFW ZVW 4.32432
52 2GK6 ADP 4.32432
53 2JLR ANP 4.32432
54 2D7D ADP 4.32432
55 1Z6T ADP 4.32432
56 2GDJ ANP 4.32432
57 2A2C NG1 4.32432
58 2A2C ADP 4.32432
59 5EP2 AZU 4.32432
60 2V5K OXM 4.32432
61 3EC1 GDP 4.33604
62 5W76 GDP 4.41558
63 6FMC DUE 4.43038
64 3DKP ADP 4.4898
65 4GBM A3P 4.64396
66 2XT3 ADP 4.65116
67 4QM7 GTP 4.67836
68 2Z5F A3P 4.69799
69 5H7K GDP 4.78589
70 1WDT GTP 4.86486
71 3BFV ADP 4.86486
72 1G3Q ADP 4.86486
73 1XKV ATP 4.86486
74 1ION ADP 4.86486
75 4R43 GDP 4.86486
76 1YTM ATP 4.86486
77 4MKF AP5 4.86486
78 4MKG AP5 4.86486
79 1SVM ATP 4.86486
80 1Q20 PLO 4.86486
81 1Q20 A3P 4.86486
82 4PJ3 ANP 4.86486
83 3BFX A3P 4.86486
84 4A4Z ANP 4.86486
85 4ZDJ UTP 4.86486
86 1H74 ADP 4.86486
87 2JJK R15 4.86486
88 1AQU A3P 4.86486
89 2NCD ADP 5
90 1G3M A3P 5.10204
91 1G3M PCQ 5.10204
92 2V2V V12 5.16605
93 2O66 FLC 5.18518
94 1T3D CYS 5.19031
95 1NJF ADP 5.2
96 1NJF AGS 5.2
97 4KBF AMP 5.20548
98 2IYL GDP 5.28169
99 5H4S RAM 5.28169
100 2CHG ANP 5.30973
101 4E03 ADP 5.33981
102 2B8T THM 5.38117
103 3U6B GDP 5.40541
104 4P3Y GDP 5.40541
105 3U6K GDP 5.40541
106 1D8T GDP 5.40541
107 2HCJ GDP 5.40541
108 4G5G GDP 5.40541
109 5JBQ GDP 5.40541
110 1D2E GDP 5.40541
111 2BVN GNP 5.40541
112 4PC3 GDP 5.40541
113 5L3V GDP 5.40541
114 1RJ9 GCP 5.40541
115 4WZA ADP 5.40541
116 4WZA ACP 5.40541
117 4V03 ADP 5.40541
118 1X6V ADP 5.40541
119 3ZFD ANP 5.40541
120 1FP6 ADP 5.40541
121 1P9B GDP 5.40541
122 6B8B ADP 5.40541
123 1NY5 ADP 5.40541
124 5J1J ANP 5.40541
125 5I0H ADP BEF 5.40541
126 2FSH ANP 5.40541
127 2I4I AMP 5.40541
128 5TIV A3P 5.40541
129 2O0J ADP 5.40541
130 1J99 AND 5.40541
131 1OYY AGS 5.40541
132 1UKZ ADP 5.41872
133 2QQ0 ANP 5.43478
134 2QQ0 THM 5.43478
135 2QQ0 TMP 5.43478
136 2QQ0 ADP 5.43478
137 2BEK ATP 5.53846
138 2ZTS ADP 5.57769
139 1Z83 AP5 5.61225
140 1QF9 C5P 5.6701
141 1QF9 ADP 5.6701
142 1QF9 ALF 5.6701
143 5TVJ COA 5.6872
144 5TVJ 7LF 5.6872
145 3IUY AMP 5.70175
146 2IL4 COA 5.82524
147 2NAD NAD 5.85242
148 1T8U UAP SGN IDS SGN 5.88235
149 1T8U A3P 5.88235
150 1KK1 GNP 5.94595
151 6A20 ADP 5.94595
152 5KSZ GCP 5.94595
153 1YQT ADP 5.94595
154 5YV5 ADP 5.94595
155 4IDN GNP 5.94595
156 1XMV ADP 5.94595
157 4IOK XPO 5.94595
158 4IOK ADP 5.94595
159 1W5T ADP 5.94595
160 4TMK T5A 5.94595
161 1W5T ANP 5.94595
162 1VKJ A3P 5.94595
163 3MGB PAP 5.94595
164 5ZXD ATP 6.04396
165 5BN3 ADP 6.25
166 2RGX AP5 6.31068
167 4AG5 ADP 6.37755
168 4NU0 AP5 6.45161
169 1BG2 ADP 6.46154
170 5H68 AGS 6.47059
171 2RCN GDP 6.48649
172 1TQ4 GDP 6.48649
173 4LC1 GDP 6.48649
174 3VMF GTP 6.48649
175 3WXM GTP 6.48649
176 4P4T GDP 6.48649
177 2XTZ GSP 6.48649
178 1G41 ADP 6.48649
179 1CR1 TTP 6.48649
180 3FVQ ATP 6.48649
181 1DAK ADP 6.48649
182 1DAK DPU 6.48649
183 1IHU AF3 6.48649
184 1IHU ADP 6.48649
185 3TBK ANP 6.48649
186 3ITJ CIT 6.48649
187 3VM7 GLC 6.48649
188 6H5E ANP 6.48649
189 2VYN NAD 6.48649
190 4OHY ANP 6.49652
191 4YJ1 ADP 6.61538
192 3QVV 3QV 6.77966
193 3QVV A3P 6.77966
194 2CDN ADP 6.96517
195 4TTQ ATP 6.97674
196 2IXE ATP 7.01107
197 2KIN ADP 7.02703
198 4YDS ATP 7.02703
199 3UIE ANP 7.02703
200 2OBM ADP 7.02703
201 4HSE ADP 7.02703
202 1R6B ADP 7.02703
203 5G3Y ADP 7.02703
204 1F5N GNP 7.02703
205 2CE7 ADP 7.02703
206 1RRC ADP 7.02703
207 1XX6 ADP 7.02703
208 2FNA ADP 7.02703
209 3V2U ATP 7.02703
210 1I0B PEL 7.02703
211 5LLB 6YZ 7.02703
212 3R96 ACO 7.02703
213 3R96 AMP 7.02703
214 1OS1 PYR 7.03704
215 1OS1 ATP 7.03704
216 2GWH A3P 7.04698
217 1B7T ADP 7.05128
218 4UXH T5A 7.06522
219 4RZ3 ADP 7.11864
220 1KK8 BEF ADP 7.19424
221 2X0K PPV 7.39645
222 4PPF FLC 7.42857
223 3QXC ATP 7.43802
224 3EWA ANP 7.45342
225 1SQ5 ADP 7.46753
226 2GMV UN8 7.52
227 1NHX FTB 7.52
228 1NHX PEP 7.52
229 2GMV PEP 7.52
230 1E2K TMC 7.55287
231 1TAD GDP 7.56757
232 1TAD ALF 7.56757
233 3NHB ADP 7.56757
234 3TMK T5A 7.56757
235 5WRJ A3P 7.56757
236 2C9O ADP 7.56757
237 5WRI A3P 7.56757
238 5MZN ADP 7.56757
239 5NM7 GLY 7.56757
240 1U1I NAD 7.65306
241 4LJ9 ACP 7.66962
242 4FCW ADP 7.71704
243 1ZUI SKM 7.7381
244 5W7Q GDP 7.7748
245 3AB4 THR 7.86517
246 5KSP GDP 7.89474
247 5UIV ADP 7.92952
248 4WZ6 ATP 7.93103
249 1CS4 GSP 8
250 3T34 GDP 8.05556
251 4R2I ANP 8.09524
252 4DCT GDP 8.10811
253 2OG2 MLI 8.10811
254 3B9Q MLI 8.10811
255 4JLV ADP 8.10811
256 5LB3 ADP 8.10811
257 2XAU ADP 8.10811
258 2BIF SIN 8.10811
259 2BIF ANP 8.10811
260 4IHQ ADP 8.10811
261 5LTJ ADP 8.10811
262 5LTJ BEF 8.10811
263 3IQE F42 8.10811
264 5GVR LMR 8.11966
265 1FQJ GDP 8.16327
266 1FQK GDP 8.16327
267 4NE2 ADP 8.38323
268 4NE2 SH2 8.38323
269 1OFH ADP 8.3871
270 2W58 ADP 8.41584
271 1SKQ GDP 8.64865
272 2Q2Y MKR 8.64865
273 2Q2Y ADP 8.64865
274 3P4X ADP 8.64865
275 2QEN ADP 8.64865
276 3EZ2 ADP 8.64865
277 3DZD ADP 8.64865
278 1IN4 ADP 8.64865
279 4YS0 ADP 8.64865
280 2ORV 4TA 8.64865
281 4WZ8 3W7 8.64865
282 1W4R TTP 8.71795
283 4ZNL BEF ADP 8.75912
284 3IIJ ADP 8.88889
285 2PL3 ADP 8.8983
286 1G6O ADP 9.09091
287 1VHT BA3 9.17431
288 1SVI GDP 9.18919
289 6G14 G4P 9.18919
290 1PUJ GNP 9.18919
291 3PQC GDP 9.18919
292 3DEF GDP 9.18919
293 5L3W GDP 9.18919
294 1LVK MNT BEF 9.18919
295 3HU3 AGS 9.18919
296 4QOS ADP 9.18919
297 5L3S GNP 9.18919
298 3B7G ANP 9.18919
299 5IFS ADP 9.18919
300 4X8O AP5 9.18919
301 1FNN ADP 9.18919
302 2JAQ DCP 9.18919
303 1JJV ATP 9.2233
304 1U0J ADP 9.3633
305 2B8W ALF 5GP 9.45122
306 5VGR GDP 9.51276
307 2Y65 ADP 9.72973
308 4KVA GTP 9.72973
309 6FAA ADP 9.72973
310 5J1S ATP 9.7561
311 4LPS GDP 9.91736
312 4CVN ADP 9.94764
313 2PZE ATP 10.0437
314 3ZIA ADP 10.0719
315 3ZIA ATP 10.0719
316 1F9V ADP 10.0865
317 1BO4 COA 10.119
318 4XVU ATP 10.1695
319 2WOJ ADP ALF 10.1695
320 5H7J GCP 10.2703
321 3CNL GNP 10.2703
322 3LRE ADP 10.2703
323 5WC2 ADP 10.2703
324 5L3R GCP 10.2703
325 4M52 FAD 10.2703
326 3Q9L ATP 10.3846
327 3KTA AP5 10.4396
328 6B4K ANP 10.4651
329 1G7C 5GP 10.6383
330 2X7I CIT 10.7143
331 4J0Q GDP 10.8108
332 2VVG ADP 10.8108
333 6AU6 GDP 10.8108
334 4H1V GNP 10.8108
335 4ZG4 VO4 ADP 10.8108
336 5FHD ADP ALF 10.8108
337 1NN5 2DT 10.8108
338 1NN5 ANP 10.8108
339 5FTB ANP 10.8108
340 2F3R G5P 10.8108
341 4IEE AGS 10.8108
342 4QRH 0O2 10.8108
343 4TL6 ANP 10.8108
344 1XEX ATP 10.989
345 1M7G AV2 11.3514
346 1M7G ADX 11.3514
347 1IWE IMP 11.3514
348 2V7Q ATP 11.3514
349 5IRR GSP 11.3514
350 1W0J ADP 11.3514
351 2CK3 ANP 11.3514
352 2V7Q ADP 11.3514
353 1W0J ADP BEF 11.3514
354 1OE0 TTP 11.3514
355 2CK3 ADP 11.3514
356 1M7G ADP 11.3514
357 4BQS ADP 11.3636
358 4BQS K2Q 11.3636
359 5XKT GNP 11.5
360 2OFW ADX 11.5385
361 6C90 ADP 11.5385
362 4Q1A 2XZ 11.7857
363 4Q1A UDP 11.7857
364 2AWN ADP 11.8919
365 3ZQ6 ADP ALF 11.8919
366 2QZ4 ADP 11.8919
367 4XGU ADP 11.8919
368 5MEX PAP 11.8919
369 1P72 ADP 11.8919
370 1Y63 ADP 11.9565
371 4KOT CE3 12.3457
372 1YRB GDP 12.4324
373 5CK5 GDP 12.4324
374 4LYA ATP 12.4324
375 1XP8 AGS 12.4324
376 2ZJ5 ADP 12.4324
377 1Q19 SSC 12.4324
378 2ZW5 COA 12.4324
379 5AK0 8V1 12.973
380 4PFO ADP 12.973
381 1AKY AP5 12.973
382 3BER AMP 12.973
383 2VB6 ADP BEF 12.973
384 1K6M AGS 12.973
385 2PEZ DAT 13.4078
386 2PEZ GGZ 13.4078
387 3H4S ADP 13.4715
388 4FRZ ADP 13.4715
389 5HCN GCP 13.5135
390 2ZR9 DTP 13.5135
391 3RLF ANP 13.5135
392 2Q6B HR2 13.5135
393 5N69 ADP 13.5678
394 1S7N COA 13.7363
395 2ZFZ ARG 13.9241
396 3QF7 ANP 14
397 4D81 ADP 14.0541
398 1R0X ATP 14.0541
399 2C78 GNP 14.5946
400 1DAR GDP 14.5946
401 1LVG ADP 14.5946
402 2C77 GNP 14.5946
403 6DEF GCP 14.5946
404 1QHG ATP 14.5946
405 3F8D FAD 14.5946
406 4WOP CTP 15.1111
407 3QKT ANP 15.1351
408 2ZPT A3P 15.2542
409 3A4M ADP 15.3846
410 4OI4 ATP 15.6522
411 2QN6 GDP 15.6757
412 4RD0 GDP 15.6757
413 4KFU ACP 16.0377
414 5ZB0 TYD 16.1616
415 5ZB0 ADP 16.1616
416 3E70 GDP 16.2162
417 4XTR ADP 16.2162
418 4XTR ATP 16.2162
419 2OZE AGS 16.2162
420 5VHC BEF ADP 16.2162
421 5HR5 ADP 16.2162
422 5X62 SAH 16.2162
423 4HUT ATP 16.2304
424 2QG6 NMN 16.5829
425 3CX8 GSP 16.7568
426 3AB3 GDP 16.7568
427 1ZCB GDP 16.7568
428 3DC4 ADP 16.7568
429 2CBZ ATP 16.7568
430 4GOX A3P 16.7568
431 3FB4 AP5 16.7568
432 3BOS CDP 16.9421
433 1W7J ADP BEF 17.2973
434 5EXT ADP 17.2973
435 2YOH WMJ 17.2973
436 5H67 ATP 18.0851
437 4ITM ATP 18.3784
438 1F2U ATP 18.9189
439 4B47 GDP 19.4595
440 5W75 GDP 19.4595
441 1GXU 2HP 19.7802
442 4HI0 GDP 20
443 3KJI ADP 20.0787
444 2X77 GDP 20.5405
445 1HTW ADP 21.519
446 1KSH GDP 21.6216
447 3DOE GTP 21.6216
448 2FH5 GTP 21.6216
449 1MKY GDP 22.7027
450 3TK1 GDP 22.7027
451 5I34 GDP 22.7027
452 2ODE ALF GDP 23.1429
453 2XTN GTP 23.2432
454 3ZS9 ADP ALF 23.6842
455 6CS8 F9Y 24.3243
456 5BQ5 ADP BEF 24.3243
457 5K04 COA 24.3243
458 1SVK ALF GDP 24.6459
459 3WY9 GDP 25
460 2OM2 GDP 25.2308
461 4ZKD GDP 25.9459
462 1BH2 GSP 26.0317
463 5GOE GDP 26.4865
464 5KDO GDP 27.027
465 1GOT GDP 27.3973
466 4ZI2 GNP 27.8947
467 1Y3A GDP 27.9635
468 3H86 AP5 28.125
469 4GOJ GNP 28.5714
470 1G7S GDP 28.6486
471 1WF3 GNP 28.6486
472 5M04 GDP 28.6486
473 5IRN ADP 29.1892
474 3AQ4 GDP 29.3478
475 5MVR ADP 30.2469
476 2A5F GTP 30.2857
477 1FZQ GDP 30.3867
478 4KAX GTP 30.7692
479 4TMZ GSP 31.3514
480 3PCR GTP 31.4815
481 2W83 GTP 31.5152
482 4YLG GDP 31.7919
483 1KO8 6PG 32
484 5DI3 GNP 32.4324
485 4M9Q GNP 32.4324
486 3N5C GDP 32.716
487 2QTV GNP 33.5329
488 5KUT GDP 34.0541
489 2J59 GTP 34.3373
490 1MH1 GNP 34.5946
491 2WKQ GTP 34.5946
492 1E96 GTP 34.5946
493 1G4U GDP 34.7826
494 1I4D GDP 35.1351
495 3SBD GNP 35.1351
496 6CRK GDP 35.2113
497 1GP2 GDP 35.2113
498 2ZEJ GDP 35.3261
499 1RYH GNP 36.2162
500 5UPK GNP 36.2162
501 1GWN GTP 36.2162
502 1NF3 GNP 36.2162
503 1UPT GTP 36.2573
504 1HE1 GDP 36.3636
505 1M7B GTP 36.413
506 2FJU GSP 36.5169
507 4DID GDP 36.7568
508 2NGR GDP 36.7568
509 2WMO GTP 36.7568
510 1GRN GDP 36.7568
511 1A4R GNH 36.7568
512 1A4R GDP 36.7568
513 4ITR GDP 36.7568
514 4V0K GDP 37.2781
515 5EE5 GTP 37.4269
516 4YC7 GNP 37.5691
517 5FG3 GDP 37.8378
518 4NCN GTP 37.8378
519 2GJ8 ALF GDP 38.3721
520 5YT0 GDP 38.3784
521 3REF GDP 38.9189
522 1MR3 G3D 40.3315
523 3T12 GDP ALF 40.5405
524 4BAS GNP 40.5405
525 3T1O GDP 40.5405
526 2W2X GSP 43.7838
527 1DS6 GDP 44.3243
528 2CJW GDP 44.8649
529 3T5G GDP 45.3039
530 1KMQ GNP 45.6522
531 3Q72 GNP 45.7831
532 1OW3 GDP 45.9459
533 5HPY GDP 45.9459
534 2GCO GNP 45.9459
535 5JCP GDP ALF 45.9459
536 2GCN GDP 45.9459
537 6BSX GDP 46.0674
538 6BSX E7S 46.0674
539 4D0N GDP 46.4865
540 3LXR GDP 46.4865
541 6BC0 GSP 46.4865
542 6BCB GSP 46.4865
543 6BCA GSP 46.4865
544 2HT6 GDP 46.5517
545 4XOI GTP 46.6667
546 4XSH GSP 46.9274
547 2J0V GDP 47.027
548 1CXZ GSP 47.2527
549 1TX4 ALF GDP 47.4576
550 5IRC GDP 47.5676
551 4U5X GNP 47.7528
552 3Q85 GNP 48.5207
553 3WYF GTP 49.1892
554 3M1I GTP 49.1892
555 5UQW GDP 49.2063
556 3E5H GNP 49.4382
557 3WYG GTP 50
Pocket No.: 2; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found with APoc: 10
This union binding pocket(no: 2) in the query (biounit: 1vg9.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 4ZJS 4P0 3.47826
2 4DDY DN6 4.32432
3 3VPH OXM 4.86486
4 5UXH GFB 5.94595
5 2WZF BGC 6.85714
6 5E5U MLI 9.04523
7 4TQK NAG 10.8108
8 5MEX SZZ 11.8919
9 4B1M FRU FRU 12.973
10 4Z7X 3CX 18.9076
Pocket No.: 3; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found with APoc: 12
This union binding pocket(no: 3) in the query (biounit: 1vg9.bio4) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 3L9W AMP 3.78378
2 4B5W PYR 4.32432
3 3FIU POP 4.86486
4 1X8J A3P 5.40541
5 2R4V GSH 8.09717
6 2VWT PYR 8.2397
7 3ELW GP3 8.64865
8 4YRY NAD 10.2703
9 4I9B 1KA 10.8108
10 2R42 FPS 11.3514
11 1QHH ATP 17.3653
12 2VOH CIT 19.1083
Pocket No.: 4; Query (leader) PDB : 1VG9; Ligand: GDP; Similar sites found with APoc: 6
This union binding pocket(no: 4) in the query (biounit: 1vg9.bio3) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 3FXU TSU 2.62295
2 5WQP NCA 3.84615
3 2QE0 NAP 4.86486
4 2B4B COA 5.26316
5 3L6C MLI 5.30973
6 1A8S PPI 11.3514
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