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Receptor
PDB id Resolution Class Description Source Keywords
1VG0 2.2 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH MONOPRENYLATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BIPROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CL A:3001;
Invalid;
none;
submit data
35.453 Cl [Cl-]
GDP B:1557;
Valid;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
GER A:952;
Valid;
none;
Kd = 0.8 nM
274.484 C20 H34 CC=C(...
MG B:3000;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
PG4 B:5502;
Invalid;
none;
submit data
194.226 C8 H18 O5 C(COC...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1VG0 2.2 Å NON-ENZYME: TRANSPORT THE CRYSTAL STRUCTURES OF THE REP-1 PROTEIN IN COMPLEX WITH MONOPRENYLATED RAB7 PROTEIN RATTUS NORVEGICUS RAB PRENYLATION POST-TRANSLATIONAL MODIFICATION PROTEIN BIPROTEIN TRANSPORT COMPLEX
Ref.: STRUCTURE OF THE RAB7:REP-1 COMPLEX: INSIGHTS INTO MECHANISM OF RAB PRENYLATION AND CHOROIDEREMIA DISE CELL(CAMBRIDGE,MASS.) V. 117 749 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 175 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 149 families.
1 1VG0 Kd = 0.8 nM GER C20 H34 CC=C(/C)CC....
2 1VG9 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Ligand no: 2; Ligand: GER; Similar ligands found: 9
No: Ligand ECFP6 Tc MDL keys Tc
1 GER 1 1
2 FAR 1 1
3 650 0.785714 0.8125
4 SQL 0.709677 0.941176
5 FOH 0.628571 0.695652
6 64Z 0.514286 0.652174
7 CTV 0.447368 0.684211
8 28U 0.444444 0.615385
9 GRQ 0.421053 0.722222
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1VG0; Ligand: GDP; Similar sites found with APoc: 560
This union binding pocket(no: 1) in the query (biounit: 1vg0.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 6AIC AMP 2.33645
2 2ZE7 DST 2.37154
3 2ZE7 AMP 2.37154
4 3R7F CP 2.41546
5 2ZPA ADP 2.46154
6 2HF9 GSP 2.65487
7 1P72 ADP 2.69461
8 3WYA GDP 2.76498
9 1UJ2 ADP 2.77778
10 1UJ2 C5P 2.77778
11 2WHX ADP 2.89855
12 5XDR ADP 2.89855
13 5M7P ADP 2.89855
14 5Z69 AGS 2.89855
15 1NST A3P 3.07692
16 1QF5 GDP 3.24826
17 1QF5 RPL 3.24826
18 2J5V PCA 3.26975
19 1SKQ GDP 3.38164
20 3MD0 GDP 3.38164
21 1FP6 ADP 3.38164
22 5ZBR ANP 3.38164
23 5G41 AP5 3.38164
24 2FAH GDP 3.38164
25 2IS6 ADP 3.38164
26 5Y6N ADP 3.42466
27 1T5C ADP 3.4384
28 2D2F ADP 3.6
29 3IO3 ADP 3.73563
30 3FWY ADP 3.82166
31 5U32 GDP 3.86473
32 1V8K ANP 3.86473
33 4WZA ADP 3.86473
34 4WZA ACP 3.86473
35 1ZIN AP5 3.86473
36 2GK6 ADP 3.86473
37 4PX9 ADP 3.86473
38 2DPY ADP 3.86473
39 3FYH ADP 3.86473
40 1Z6T ADP 3.86473
41 2GKS ADP 3.86473
42 4BFW ZVW 3.86473
43 2GDJ ANP 3.86473
44 2JLR ANP 3.86473
45 2D7D ADP 3.86473
46 2A2C ADP 3.86473
47 2A2C NG1 3.86473
48 3VX3 ADP 4.03226
49 1H65 GDP 4.07407
50 5K5Z ANP 4.14013
51 1S3G AP5 4.14747
52 3H86 AP5 4.16667
53 1GOJ ADP 4.22535
54 3FKQ ATP 4.28954
55 3EC1 GDP 4.33604
56 3EZ2 ADP 4.34783
57 1XKV ATP 4.34783
58 1G3Q ADP 4.34783
59 3BFV ADP 4.34783
60 1ION ADP 4.34783
61 4D81 ADP 4.34783
62 1YTM ATP 4.34783
63 4R43 GDP 4.34783
64 4MKF AP5 4.34783
65 4MKG AP5 4.34783
66 1SVM ATP 4.34783
67 1Q20 A3P 4.34783
68 1Q20 PLO 4.34783
69 4PJ3 ANP 4.34783
70 4A4Z ANP 4.34783
71 5W76 GDP 4.41558
72 6FMC DUE 4.43038
73 3DKP ADP 4.4898
74 4GBM A3P 4.64396
75 2XT3 ADP 4.65116
76 4QM7 GTP 4.67836
77 3BFX A3P 4.72973
78 5H7K GDP 4.78589
79 3U6B GDP 4.83092
80 1D8T GDP 4.83092
81 2HCJ GDP 4.83092
82 4G5G GDP 4.83092
83 5JBQ GDP 4.83092
84 3U6K GDP 4.83092
85 2BVN GNP 4.83092
86 1D2E GDP 4.83092
87 4PC3 GDP 4.83092
88 5TSH ADP 4.83092
89 5L3V GDP 4.83092
90 5TSH ANP 4.83092
91 4V03 ADP 4.83092
92 2Q2Y MKR 4.83092
93 2Q2Y ADP 4.83092
94 1X6V ADP 4.83092
95 1P9B GDP 4.83092
96 6B8B ADP 4.83092
97 1NY5 ADP 4.83092
98 5J1J ANP 4.83092
99 5I0H ADP BEF 4.83092
100 2O0J ADP 4.83092
101 2FSH ANP 4.83092
102 1OYY AGS 4.83092
103 2I4I AMP 4.83092
104 1J99 AND 4.83092
105 1RJ9 GCP 4.93421
106 5M04 GDP 5
107 2NCD ADP 5
108 1G3M PCQ 5.10204
109 1G3M A3P 5.10204
110 1K4M CIT 5.16432
111 2O66 FLC 5.18518
112 1T3D CYS 5.19031
113 1NJF AGS 5.2
114 1NJF ADP 5.2
115 2IYL GDP 5.28169
116 5H4S RAM 5.28169
117 2CHG ANP 5.30973
118 1KK1 GNP 5.31401
119 5KSZ GCP 5.31401
120 4LYA ATP 5.31401
121 6A20 ADP 5.31401
122 1XMV ADP 5.31401
123 1YQT ADP 5.31401
124 5YV5 ADP 5.31401
125 1W5T ANP 5.31401
126 1W5T ADP 5.31401
127 1VKJ A3P 5.31401
128 5TIV A3P 5.31401
129 5BYK OAQ 5.31401
130 5BYK A3P 5.31401
131 3ITJ CIT 5.31401
132 4TMK T5A 5.31401
133 4E03 ADP 5.33981
134 2B8T THM 5.38117
135 1UKZ ADP 5.41872
136 2QQ0 ANP 5.43478
137 2QQ0 THM 5.43478
138 2QQ0 TMP 5.43478
139 2QQ0 ADP 5.43478
140 2BEK ATP 5.53846
141 4P4T GDP 5.55556
142 2ZTS ADP 5.57769
143 1Z83 AP5 5.61225
144 1QF9 ADP 5.6701
145 1QF9 ALF 5.6701
146 1QF9 C5P 5.6701
147 4IDN GNP 5.68928
148 3IUY AMP 5.70175
149 2RCN GDP 5.7971
150 1TQ4 GDP 5.7971
151 3VMF GTP 5.7971
152 3WXM GTP 5.7971
153 2XTZ GSP 5.7971
154 4LC1 GDP 5.7971
155 3ZQ6 ADP ALF 5.7971
156 1G41 ADP 5.7971
157 1IHU AF3 5.7971
158 1CR1 TTP 5.7971
159 1IHU ADP 5.7971
160 1DAK ADP 5.7971
161 1DAK DPU 5.7971
162 3FVQ ATP 5.7971
163 3TBK ANP 5.7971
164 3VM7 GLC 5.7971
165 6H5E ANP 5.7971
166 2JJK R15 5.7971
167 1AQU A3P 5.7971
168 3QDK QDK 5.7971
169 2IL4 COA 5.82524
170 5ZXD ATP 6.04396
171 2OBM ADP 6.28019
172 2FNA ADP 6.28019
173 2CE7 ADP 6.28019
174 1R6B ADP 6.28019
175 4HSE ADP 6.28019
176 1F5N GNP 6.28019
177 1RRC ADP 6.28019
178 3V2U ATP 6.28019
179 1I0B PEL 6.28019
180 5UAV TFB 6.28019
181 5UAV NDP 6.28019
182 2RGX AP5 6.31068
183 4AG5 ADP 6.37755
184 4NU0 AP5 6.45161
185 1BG2 ADP 6.46154
186 5H68 AGS 6.47059
187 4OHY ANP 6.49652
188 3UIE ANP 6.5
189 5G3Y ADP 6.63717
190 1TAD ALF 6.76329
191 1TAD GDP 6.76329
192 4Q1A 2XZ 6.76329
193 4Q1A UDP 6.76329
194 2C9O ADP 6.76329
195 3ZFD ANP 6.76329
196 3NHB ADP 6.76329
197 3TMK T5A 6.76329
198 5NM7 GLY 6.76329
199 5WRJ A3P 6.76329
200 5WRI A3P 6.76329
201 5MZN ADP 6.76329
202 3QVV A3P 6.77966
203 1XX6 ADP 6.80628
204 2CDN ADP 6.96517
205 4TTQ ATP 6.97674
206 2IXE ATP 7.01107
207 1OS1 PYR 7.03704
208 1OS1 ATP 7.03704
209 1B7T ADP 7.05128
210 4UXH T5A 7.06522
211 4RZ3 ADP 7.11864
212 1KK8 BEF ADP 7.19424
213 4DCT GDP 7.24638
214 2OG2 MLI 7.24638
215 4JLV ADP 7.24638
216 4IHQ ADP 7.24638
217 5LTJ ADP 7.24638
218 5LTJ BEF 7.24638
219 2XAU ADP 7.24638
220 2BIF SIN 7.24638
221 2BIF ANP 7.24638
222 4ZDJ UTP 7.24638
223 3B9Q MLI 7.24638
224 1GHE ACO 7.34463
225 2X0K PPV 7.39645
226 4PPF FLC 7.42857
227 3EWA ANP 7.45342
228 1SQ5 ADP 7.46753
229 1NHX PEP 7.52
230 1NHX FTB 7.52
231 2GMV UN8 7.52
232 2GMV PEP 7.52
233 1E2K TMC 7.55287
234 1U1I NAD 7.65306
235 4LJ9 ACP 7.66962
236 4FCW ADP 7.71704
237 1WDT GTP 7.72947
238 2QEN ADP 7.72947
239 3P4X ADP 7.72947
240 1IN4 ADP 7.72947
241 3DZD ADP 7.72947
242 4YS0 ADP 7.72947
243 1ZUI SKM 7.7381
244 3AB4 THR 7.86517
245 3FB4 AP5 7.87037
246 5KSP GDP 7.89474
247 5UIV ADP 7.92952
248 4WZ6 ATP 7.93103
249 1CS4 GSP 8
250 3T34 GDP 8.05556
251 4R2I ANP 8.09524
252 5GVR LMR 8.11966
253 1FQK GDP 8.16327
254 1FQJ GDP 8.16327
255 3PQC GDP 8.20513
256 6G14 G4P 8.21256
257 1PUJ GNP 8.21256
258 3DEF GDP 8.21256
259 5L3W GDP 8.21256
260 5L3S GNP 8.21256
261 5IFS ADP 8.21256
262 1LVK MNT BEF 8.21256
263 3B7G ANP 8.21256
264 3HU3 AGS 8.21256
265 3QXC ATP 8.21256
266 1FNN ADP 8.21256
267 4X8O AP5 8.21256
268 4QOS ADP 8.21256
269 4IOK XPO 8.21256
270 4IOK ADP 8.21256
271 2JAQ DCP 8.29268
272 4NE2 ADP 8.38323
273 4NE2 SH2 8.38323
274 1OFH ADP 8.3871
275 2W58 ADP 8.41584
276 2ORV 4TA 8.54701
277 2Y65 ADP 8.69565
278 4KVA GTP 8.69565
279 6FAA ADP 8.69565
280 4YJ1 ADP 8.69565
281 1SVI GDP 8.71795
282 1W4R TTP 8.71795
283 4ZNL BEF ADP 8.75912
284 3IIJ ADP 8.88889
285 2PL3 ADP 8.8983
286 5E5U MLI 9.04523
287 1G6O ADP 9.09091
288 1VHT BA3 9.17431
289 5H7J GCP 9.17874
290 3CNL GNP 9.17874
291 5WC2 ADP 9.17874
292 3LRE ADP 9.17874
293 1JJV ATP 9.2233
294 5L3R GCP 9.30233
295 2B4B COA 9.35672
296 1U0J ADP 9.3633
297 2B8W ALF 5GP 9.45122
298 5VGR GDP 9.51276
299 6AU6 GDP 9.66184
300 4H1V GNP 9.66184
301 2VVG ADP 9.66184
302 4ZG4 VO4 ADP 9.66184
303 4TL6 ANP 9.66184
304 5FHD ADP ALF 9.66184
305 5FTB ANP 9.66184
306 1NN5 ANP 9.66184
307 1NN5 2DT 9.66184
308 3RC3 ANP 9.66184
309 4IEE AGS 9.66184
310 2F3R G5P 9.66184
311 4QRH 0O2 9.66184
312 4I9B 1KA 9.66184
313 5J1S ATP 9.7561
314 4LPS GDP 9.91736
315 4CVN ADP 9.94764
316 2PZE ATP 10.0437
317 3ZIA ATP 10.0719
318 3ZIA ADP 10.0719
319 1F9V ADP 10.0865
320 1BO4 COA 10.119
321 1M7G AV2 10.1449
322 5IRR GSP 10.1449
323 1IWE IMP 10.1449
324 1W0J ADP 10.1449
325 5LB3 ADP 10.1449
326 1M7G ADX 10.1449
327 1W0J ADP BEF 10.1449
328 1OE0 TTP 10.1449
329 1M7G ADP 10.1449
330 2WOJ ADP ALF 10.1695
331 4XVU ATP 10.1695
332 3Q9L ATP 10.3846
333 4P3Y GDP 10.4396
334 3KTA AP5 10.4396
335 4XGU ADP 10.628
336 2QZ4 ADP 10.628
337 2AWN ADP 10.628
338 3RLF ANP 10.628
339 5MEX SZZ 10.628
340 1G7C 5GP 10.6383
341 2X7I CIT 10.7143
342 1XEX ATP 10.989
343 1YRB GDP 11.1111
344 5CK5 GDP 11.1111
345 6B4K ANP 11.1111
346 1XP8 AGS 11.1111
347 1Q19 SSC 11.1111
348 4BQS K2Q 11.3636
349 4BQS ADP 11.3636
350 5XKT GNP 11.5
351 2OFW ADX 11.5385
352 6C90 ADP 11.5385
353 5W7Q GDP 11.5942
354 2KIN ADP 11.5942
355 5AK0 8V1 11.5942
356 4PFO ADP 11.5942
357 1K6M AGS 11.5942
358 4YDS ATP 11.5942
359 2VB6 ADP BEF 11.5942
360 3BER AMP 11.5942
361 1Y63 ADP 11.9565
362 5HCN GCP 12.0773
363 2ZR9 DTP 12.0773
364 1AKY AP5 12.0773
365 4KOT CE3 12.3457
366 5BN3 ADP 12.5604
367 1R0X ATP 12.5604
368 4B1M FRU FRU 12.973
369 2C78 GNP 13.0435
370 2C77 GNP 13.0435
371 1DAR GDP 13.0435
372 6DEF GCP 13.0435
373 1LVG ADP 13.1313
374 2PEZ DAT 13.4078
375 2PEZ GGZ 13.4078
376 3H4S ADP 13.4715
377 4FRZ ADP 13.4715
378 3QKT ANP 13.5266
379 5N69 ADP 13.5678
380 3QF7 ANP 14
381 4RD0 GDP 14.0097
382 2QN6 GDP 14.0097
383 4KBF AMP 14.0097
384 3E70 GDP 14.4928
385 5VHC BEF ADP 14.4928
386 2OZE AGS 14.4928
387 5HR5 ADP 14.4928
388 3CX8 GSP 14.9758
389 3AB3 GDP 14.9758
390 1ZCB GDP 14.9758
391 3DC4 ADP 14.9758
392 2CBZ ATP 14.9758
393 4GOX A3P 14.9758
394 4WOP CTP 15.1111
395 2ZPT A3P 15.2542
396 3A4M ADP 15.3846
397 4J0Q GDP 15.4589
398 5EXT ADP 15.4589
399 4OI4 ATP 15.6522
400 2YOH WMJ 15.942
401 4KFU ACP 16.0377
402 5ZB0 ADP 16.1616
403 5ZB0 TYD 16.1616
404 4XTR ATP 16.2162
405 4XTR ADP 16.2162
406 4HUT ATP 16.2304
407 1W7J ADP BEF 16.5563
408 2QG6 NMN 16.5829
409 3BOS CDP 16.9421
410 5W75 GDP 17.3913
411 4B47 GDP 17.3913
412 4HI0 GDP 17.8744
413 5H67 ATP 18.0851
414 1F2U ATP 18.9189
415 2FH5 GTP 19.3237
416 1GXU 2HP 19.7802
417 3KJI ADP 20.0787
418 2X77 GDP 20.1058
419 1MKY GDP 20.2899
420 3TK1 GDP 20.2899
421 3DOE GTP 20.8333
422 2XTN GTP 21.256
423 1KSH GDP 21.5054
424 1HTW ADP 21.519
425 6CS8 F9Y 21.7391
426 5K04 COA 21.7391
427 5I34 GDP 22.2222
428 2ODE ALF GDP 23.1429
429 4ZKD GDP 23.1884
430 5GOE GDP 23.6715
431 3ZS9 ADP ALF 23.6842
432 5BQ5 ADP BEF 23.8095
433 1SVK ALF GDP 24.6459
434 3WY9 GDP 25
435 2OM2 GDP 25.2308
436 6FHQ DE5 25.8621
437 5KUT GDP 25.9259
438 1BH2 GSP 26.0317
439 5IRN ADP 26.087
440 5KDO GDP 27.027
441 1GWN GTP 27.3171
442 1Y3A GDP 27.9635
443 4GOJ GNP 28.0423
444 4ZI2 GNP 28.4211
445 4M9Q GNP 28.5024
446 5DI3 GNP 28.5024
447 1GOT GDP 28.7671
448 3AQ4 GDP 29.3478
449 1FZQ GDP 29.8343
450 4KAX GTP 30.1775
451 5MVR ADP 30.2469
452 2A5F GTP 30.2857
453 1M7B GTP 30.4348
454 2WKQ GTP 30.9179
455 3PCR GTP 31.4815
456 2W83 GTP 31.5152
457 4YLG GDP 31.7919
458 1KO8 6PG 32
459 3N5C GDP 32.716
460 1RYH GNP 33.0049
461 1E96 GTP 33.3333
462 1G7S GDP 33.3333
463 2QTV GNP 33.5329
464 2J59 GTP 33.7349
465 5FG3 GDP 33.8164
466 4NCN GTP 33.8164
467 4TMZ GSP 33.8164
468 1I4D GDP 33.8542
469 5YT0 GDP 34.2995
470 1NF3 GNP 34.359
471 1MH1 GNP 34.4086
472 3SBD GNP 34.7594
473 1G4U GDP 34.7826
474 6CRK GDP 35.2113
475 1GP2 GDP 35.2113
476 4DID GDP 35.2332
477 2ZEJ GDP 35.3261
478 2NGR GDP 35.6021
479 1GRN GDP 35.6021
480 1A4R GNH 35.6021
481 1A4R GDP 35.6021
482 4ITR GDP 35.6021
483 2WMO GTP 35.7895
484 2FJU GSP 35.9551
485 5UPK GNP 36.2162
486 1UPT GTP 36.2573
487 1HE1 GDP 36.3636
488 3REF GDP 36.5979
489 4V0K GDP 37.2781
490 5EE5 GTP 37.4269
491 4YC7 GNP 37.5691
492 4BAS GNP 37.6884
493 3T12 GDP ALF 37.8788
494 3T1O GDP 37.8788
495 2V7Q ATP 38
496 2CK3 ANP 38
497 2V7Q ADP 38
498 2CK3 ADP 38
499 1WF3 GNP 38.1642
500 2GJ8 ALF GDP 38.3721
501 1MR3 G3D 40.3315
502 5JCP GDP ALF 41.0628
503 2GCN GDP 42.2886
504 2GCO GNP 42.2886
505 1DS6 GDP 42.7083
506 2CJW GDP 43.2292
507 2W2X GSP 43.7838
508 3WYF GTP 43.9614
509 3M1I GTP 43.9614
510 1OW3 GDP 44.0415
511 3T5G GDP 45.3039
512 1KMQ GNP 45.6522
513 3Q72 GNP 45.7831
514 3GJ4 GDP 45.8937
515 3GJ7 GDP 45.8937
516 3GJ5 GDP 45.8937
517 2J0V GDP 45.8937
518 3GJ8 GDP 45.8937
519 3GJX GTP 45.8937
520 5HPY GDP 45.9459
521 6BSX GDP 46.0674
522 6BSX E7S 46.0674
523 5BXQ GDP 46.3768
524 5UWP GNP 46.3768
525 5UWQ GNP 46.3768
526 5DIF GNP 46.3768
527 4HAT GNP 46.3768
528 5UWU GNP 46.3768
529 5UWW GNP 46.3768
530 6CIT GNP 46.3768
531 5UWI GNP 46.3768
532 5UWR GNP 46.3768
533 5UWS GNP 46.3768
534 5DHF GNP 46.3768
535 5UWH GNP 46.3768
536 5UWT GNP 46.3768
537 3GJ3 GDP 46.3768
538 3CH5 GDP 46.3768
539 3GJ0 GDP 46.3768
540 5UWJ GNP 46.3768
541 1IBR GNP 46.3768
542 5DI9 GNP 46.3768
543 4D0N GDP 46.4865
544 3LXR GDP 46.4865
545 6BCA GSP 46.4865
546 6BC0 GSP 46.4865
547 6BCB GSP 46.4865
548 2HT6 GDP 46.5517
549 4XOI GTP 46.6667
550 4XSH GSP 46.9274
551 1CXZ GSP 47.2527
552 5IRC GDP 47.3118
553 1TX4 ALF GDP 47.4576
554 4U5X GNP 47.7528
555 3Q85 GNP 48.5207
556 2G77 GDP 48.9899
557 2G77 AF3 48.9899
558 5UQW GDP 49.2063
559 3E5H GNP 49.4382
560 5SZH GNP 49.7537
561 5UWO GNP 50
562 3WYG GTP 50
Pocket No.: 2; Query (leader) PDB : 1VG0; Ligand: GER; Similar sites found with APoc: 53
This union binding pocket(no: 2) in the query (biounit: 1vg0.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4WG0 CHD None
2 3FSM 2NC 0.985222
3 1YOK P6L 2.73438
4 5WIU AQD 3.38164
5 1TO9 HMH 3.46154
6 4ZJS 4P0 3.47826
7 3IB1 IMN 3.76812
8 2UUU FAD 3.86473
9 4IN9 SER TRP PHE PRO 4.21687
10 3HP9 CF1 4.34783
11 5NCB JZ3 4.34783
12 4L9Z OXL 4.34783
13 1U25 IHS 4.45104
14 2ED4 NAD 4.69799
15 2F7A BEZ 4.83092
16 4Q9M FPP 4.83092
17 1TD2 PXL 4.83092
18 3KA2 2NC 4.92611
19 1XQP 8HG 5.31401
20 1P4C FMN 5.31401
21 1RZ1 NAD 6.21118
22 4UDB CV7 6.61765
23 5DQY BEZ 6.66667
24 5JBE MAL 6.76329
25 6B2W AG2 6.76329
26 3QVV 3QV 6.77966
27 1ZPD CIT 7.24638
28 4WZ8 3W7 7.72947
29 4ZOH MCN 7.7381
30 5CXI 5TW 8.37438
31 3LN0 52B 8.69565
32 5JBX MLI 8.69565
33 1BWO LPC 8.88889
34 2XRH NIO 9
35 4Z87 5GP 9.17874
36 5OFW 9TW 9.17874
37 4KCF FMN 9.17874
38 3S43 478 10.101
39 2P3C 3TL 10.101
40 3MWS 017 11.1111
41 4C2W ANP 11.5385
42 1Y63 ADP 11.9565
43 5N53 8NB 12.3077
44 1SBR VIB 13
45 3A8H TAY 13.0435
46 5KVM THR TYR PHE ALA VAL LEU MET VAL SER 13.6842
47 1IDA 0PO 16.1616
48 1M2Z DEX 16.3424
49 5CSD ACD 17.6101
50 3D78 NBB 17.6471
51 5CX8 RP3 17.8744
52 1LTI GAL 24.2718
53 5Z84 CHD 26.7857
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