Receptor
PDB id Resolution Class Description Source Keywords
1UZH 2.2 Å EC: 4.1.1.39 A CHIMERIC CHLAMYDOMONAS, SYNECHOCOCCUS RUBISCO ENZYME CHLAMYDOMONAS REINHARDTII LYASE RUBISCO PHOTOSYNTHESIS CARBON DIOXIDE FIXATION PHOTORESPIRATION OXIDOREDUCTASE MONOOXYGENASE CHLOROPLAST TRANSIT PEPTIDE MULTIGENE FAMILY
Ref.: CHIMERIC SMALL SUBUNITS INFLUENCE CATALYSIS WITHOUT CAUSING GLOBAL CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURE OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE BIOCHEMISTRY V. 44 9851 2005
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CAP A:477;
B:477;
E:477;
H:477;
K:477;
O:477;
R:477;
V:477;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
356.115 C6 H14 O13 P2 C([C@...
EDO A:1476;
A:1477;
A:1478;
A:1479;
A:1480;
B:1476;
B:1477;
B:1478;
B:1479;
B:1480;
B:1481;
C:1123;
E:1476;
E:1477;
E:1478;
E:1479;
E:1480;
F:1123;
H:1476;
H:1477;
H:1478;
H:1479;
H:1480;
H:1481;
J:1123;
K:1476;
K:1477;
K:1478;
K:1479;
K:1480;
M:1123;
O:1476;
O:1477;
O:1478;
O:1479;
O:1480;
P:1123;
R:1476;
R:1477;
R:1478;
R:1479;
R:1480;
T:1123;
V:1476;
V:1477;
V:1478;
V:1479;
V:1480;
V:1481;
W:1123;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
MG A:476;
B:476;
E:476;
H:476;
K:476;
O:476;
R:476;
V:476;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UZH 2.2 Å EC: 4.1.1.39 A CHIMERIC CHLAMYDOMONAS, SYNECHOCOCCUS RUBISCO ENZYME CHLAMYDOMONAS REINHARDTII LYASE RUBISCO PHOTOSYNTHESIS CARBON DIOXIDE FIXATION PHOTORESPIRATION OXIDOREDUCTASE MONOOXYGENASE CHLOROPLAST TRANSIT PEPTIDE MULTIGENE FAMILY
Ref.: CHIMERIC SMALL SUBUNITS INFLUENCE CATALYSIS WITHOUT CAUSING GLOBAL CONFORMATIONAL CHANGES IN THE CRYSTAL STRUCTURE OF RIBULOSE-1,5-BISPHOSPHATE CARBOXYLASE/OXYGENASE BIOCHEMISTRY V. 44 9851 2005
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 19 families.
1 1UZH - CAP C6 H14 O13 P2 C([C@H]([C....
70% Homology Family (6)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 16 families.
1 1UWA - CAP C6 H14 O13 P2 C([C@H]([C....
2 1UW9 - CAP C6 H14 O13 P2 C([C@H]([C....
3 1UPP - CAP C6 H14 O13 P2 C([C@H]([C....
4 1RCX - RUB C5 H12 O11 P2 C([C@H]([C....
5 1UZD - CAP C6 H14 O13 P2 C([C@H]([C....
6 1UZH - CAP C6 H14 O13 P2 C([C@H]([C....
50% Homology Family (14)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 1UWA - CAP C6 H14 O13 P2 C([C@H]([C....
2 1UW9 - CAP C6 H14 O13 P2 C([C@H]([C....
3 8RUC - CAP C6 H14 O13 P2 C([C@H]([C....
4 1UPM - CAP C6 H14 O13 P2 C([C@H]([C....
5 1AA1 - 3PG C3 H7 O7 P C([C@H](C(....
6 1RCO - XDP C5 H14 O12 P2 C([C@H]([C....
7 1RBO Kd = 0.19 pM CAP C6 H14 O13 P2 C([C@H]([C....
8 1RXO - RUB C5 H12 O11 P2 C([C@H]([C....
9 1UPP - CAP C6 H14 O13 P2 C([C@H]([C....
10 1RCX - RUB C5 H12 O11 P2 C([C@H]([C....
11 1UZD - CAP C6 H14 O13 P2 C([C@H]([C....
12 1UZH - CAP C6 H14 O13 P2 C([C@H]([C....
13 1RSC - XBP C5 H12 O11 P2 C([C@H]([C....
14 1RBL - CAP C6 H14 O13 P2 C([C@H]([C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CAP; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 CAP 1 1
2 XDP 0.543478 0.945946
3 DER 0.434783 0.918919
4 DEZ 0.434783 0.918919
5 4TP 0.416667 0.772727
6 PA5 0.408163 0.918919
7 R10 0.408163 0.918919
8 HG3 0.404762 0.810811
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1uzh.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1uzh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1uzh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1uzh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1uzh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1uzh.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 1uzh.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 1UZH; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1uzh.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
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