Receptor
PDB id Resolution Class Description Source Keywords
1UDC 1.65 Å EC: 5.1.3.2 STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-MA ESCHERICHIA COLI UDP-GALACTOSE EPIMERASE ISOMERASE
Ref.: STRUCTURAL ANALYSIS OF UDP-SUGAR BINDING TO UDP-GAL 4-EPIMERASE FROM ESCHERICHIA COLI. BIOCHEMISTRY V. 36 6294 1997
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
EDO A:370;
A:371;
A:372;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
62.068 C2 H6 O2 C(CO)...
NA A:350;
A:351;
A:352;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
22.99 Na [Na+]
NAD A:340;
Valid;
none;
submit data
663.425 C21 H27 N7 O14 P2 c1cc(...
PGE A:360;
Invalid;
none;
submit data
150.173 C6 H14 O4 C(COC...
UFM A:341;
Valid;
none;
submit data
566.302 C15 H24 N2 O17 P2 C1=CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1UDB 1.65 Å EC: 5.1.3.2 STRUCTURE OF UDP-GALACTOSE-4-EPIMERASE COMPLEXED WITH UDP-4- FLUORO-ALPHA-D-GLUCOSE ESCHERICHIA COLI UDP-GALACTOSE EPIMERASE ISOMERASE
Ref.: STRUCTURAL ANALYSIS OF UDP-SUGAR BINDING TO UDP-GAL 4-EPIMERASE FROM ESCHERICHIA COLI. BIOCHEMISTRY V. 36 6294 1997
Members (17)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1XEL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1KVT - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 1LRJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 1LRL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1KVQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 1KVS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 2UDP - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 1UDC - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 1NAI - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 1UDA Ki = 1.4 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
11 1KVU - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
12 1A9Y - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
13 1LRK - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
14 1A9Z - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
15 1NAH - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
16 1UDB Ki = 1.2 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
17 1KVR - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (17)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 6 families.
1 1XEL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1KVT - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 1LRJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 1LRL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1KVQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 1KVS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 2UDP - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 1UDC - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 1NAI - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 1UDA Ki = 1.4 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
11 1KVU - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
12 1A9Y - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
13 1LRK - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
14 1A9Z - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
15 1NAH - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
16 1UDB Ki = 1.2 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
17 1KVR - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (25)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1XEL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 1KVT - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 1LRJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 1LRL - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 1KVQ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
6 1KVS - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
7 2UDP - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
8 1UDC - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
9 1NAI - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
10 1UDA Ki = 1.4 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
11 1KVU - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
12 1A9Y - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
13 1LRK - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
14 1A9Z - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
15 1NAH - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
16 1UDB Ki = 1.2 mM UFG C15 H23 F N2 O16 P2 C1=CN(C(=O....
17 1KVR - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
18 1I3L - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
19 1I3M - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
20 1I3K - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
21 1EK5 - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
22 1HZJ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
23 1EK6 - NAI C21 H29 N7 O14 P2 c1nc(c2c(n....
24 1I3N - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
25 1GY8 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAD; Similar ligands found: 230
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NHD 0.821429 0.972222
3 NAP 0.811966 0.986111
4 NFD 0.791304 0.946667
5 NXX 0.765766 0.972603
6 DND 0.765766 0.972603
7 AMP NAD 0.74359 0.972222
8 ZID 0.737705 0.986111
9 NAQ 0.729508 0.934211
10 NAE 0.721311 0.959459
11 NA0 0.712 0.972603
12 TAP 0.704 0.921053
13 NDE 0.689922 0.972603
14 NAJ 0.683333 0.972222
15 NDC 0.679389 0.934211
16 NDO 0.674603 0.958904
17 N01 0.656 0.972222
18 CNA 0.642276 0.972603
19 NBP 0.621212 0.922078
20 8ID 0.609756 0.922078
21 A2D 0.576923 0.958333
22 ADP 0.575472 0.931507
23 NGD 0.574803 0.922078
24 BA3 0.566038 0.958333
25 M33 0.564815 0.918919
26 ADP PO3 0.563636 0.957747
27 B4P 0.560748 0.958333
28 AP5 0.560748 0.958333
29 AN2 0.555556 0.918919
30 AT4 0.555556 0.894737
31 GAP 0.553571 0.932432
32 OOB 0.551724 0.972222
33 CA0 0.550459 0.932432
34 9JJ 0.546053 0.898734
35 HEJ 0.545455 0.931507
36 ACP 0.545455 0.906667
37 ATP 0.545455 0.931507
38 DQV 0.544 0.972222
39 ADP ALF 0.54386 0.883117
40 ALF ADP 0.54386 0.883117
41 DAL AMP 0.543103 0.945205
42 APR 0.540541 0.931507
43 AQP 0.540541 0.931507
44 AR6 0.540541 0.931507
45 5FA 0.540541 0.931507
46 ADP VO4 0.53913 0.945205
47 VO4 ADP 0.53913 0.945205
48 AD9 0.535714 0.906667
49 SAP 0.535714 0.883117
50 AGS 0.535714 0.883117
51 WAQ 0.533333 0.896104
52 ABM 0.53271 0.905405
53 DLL 0.529412 0.972222
54 00A 0.529412 0.921053
55 ACQ 0.526316 0.906667
56 NJP 0.526316 0.959459
57 ANP 0.526316 0.906667
58 OAD 0.525 0.932432
59 ADX 0.522523 0.839506
60 5AL 0.521739 0.945205
61 A1R 0.521008 0.871795
62 9SN 0.520325 0.909091
63 A 0.518868 0.930556
64 AMP 0.518868 0.930556
65 50T 0.517857 0.893333
66 ATF 0.517241 0.894737
67 1ZZ 0.516393 0.851852
68 3OD 0.516393 0.932432
69 SON 0.513514 0.92
70 PRX 0.513274 0.881579
71 6YZ 0.512821 0.906667
72 SRP 0.512821 0.92
73 9X8 0.512397 0.883117
74 ADP BMA 0.512397 0.932432
75 3UK 0.512397 0.958904
76 MYR AMP 0.512195 0.851852
77 NAJ PZO 0.510949 0.909091
78 NMN 0.509434 0.875
79 A3R 0.508333 0.871795
80 B5V 0.508197 0.945946
81 AMP DBH 0.507937 0.906667
82 A22 0.504202 0.945205
83 ATP A A A 0.504 0.971831
84 B5M 0.504 0.933333
85 FA5 0.504 0.945946
86 8QN 0.5 0.945205
87 NAX 0.496183 0.886076
88 TYR AMP 0.496063 0.933333
89 PR8 0.495935 0.8625
90 AMO 0.495868 0.92
91 ADQ 0.495868 0.932432
92 4AD 0.495868 0.933333
93 PAJ 0.495868 0.873418
94 A12 0.495495 0.894737
95 AP2 0.495495 0.894737
96 AHZ 0.492308 0.851852
97 YAP 0.492063 0.933333
98 FYA 0.491935 0.918919
99 AHX 0.491803 0.884615
100 4UU 0.488372 0.933333
101 5SV 0.487603 0.8375
102 TAT 0.487179 0.894737
103 T99 0.487179 0.894737
104 APC 0.486957 0.894737
105 SRA 0.486239 0.881579
106 6V0 0.484848 0.909091
107 NAI 0.484848 0.921053
108 GTA 0.484615 0.898734
109 A A 0.483871 0.958333
110 LAD 0.483871 0.873418
111 AU1 0.482456 0.906667
112 F2R 0.481752 0.831325
113 OMR 0.481203 0.841463
114 TXE 0.481203 0.921053
115 AF3 ADP 3PG 0.481203 0.873418
116 LAQ 0.480916 0.851852
117 G3A 0.48062 0.909091
118 B5Y 0.480315 0.933333
119 NB8 0.48 0.884615
120 TXA 0.48 0.92
121 BIS 0.48 0.871795
122 ME8 0.48 0.851852
123 PTJ 0.48 0.884615
124 139 0.477941 0.886076
125 LPA AMP 0.477273 0.851852
126 AFH 0.476923 0.873418
127 AR6 AR6 0.476923 0.958333
128 G5P 0.476923 0.909091
129 ARG AMP 0.476923 0.841463
130 25L 0.47619 0.945205
131 NAJ PYZ 0.475524 0.864198
132 25A 0.47541 0.958333
133 9ZA 0.47541 0.896104
134 9ZD 0.47541 0.896104
135 DZD 0.47482 0.897436
136 TXD 0.473684 0.921053
137 4UV 0.472868 0.933333
138 TYM 0.470149 0.945946
139 RBY 0.470085 0.894737
140 ADV 0.470085 0.894737
141 4TA 0.467626 0.864198
142 48N 0.466165 0.884615
143 XAH 0.465116 0.851852
144 4UW 0.462687 0.897436
145 M24 0.461538 0.886076
146 80F 0.460993 0.853659
147 IOT 0.459854 0.821429
148 T5A 0.456522 0.853659
149 EAD 0.455782 0.886076
150 MAP 0.455285 0.883117
151 GA7 0.454545 0.894737
152 BT5 0.453901 0.821429
153 A4P 0.452555 0.833333
154 UP5 0.451852 0.933333
155 PAP 0.445378 0.917808
156 4TC 0.445255 0.909091
157 AP0 0.445255 0.884615
158 YLP 0.444444 0.831325
159 P1H 0.443709 0.864198
160 AOC 0.442478 0.810811
161 Z5A 0.439189 0.833333
162 LMS 0.4375 0.817073
163 2A5 0.436975 0.857143
164 A G 0.43662 0.921053
165 G A A A 0.43662 0.909091
166 COD 0.43662 0.802326
167 ADJ 0.435714 0.841463
168 YLB 0.434783 0.831325
169 YLC 0.434783 0.851852
170 U A G G 0.433566 0.921053
171 ATR 0.433333 0.90411
172 7MD 0.432836 0.851852
173 8X1 0.432 0.764045
174 G5A 0.429752 0.790698
175 PO4 PO4 A A A A PO4 0.429688 0.943662
176 TAD 0.42963 0.873418
177 5AS 0.42735 0.770115
178 BTX 0.426573 0.831325
179 YLA 0.425532 0.831325
180 DSZ 0.425197 0.790698
181 NCN 0.424779 0.805556
182 UPA 0.42446 0.921053
183 8PZ 0.424242 0.811765
184 VMS 0.424 0.8
185 54H 0.424 0.8
186 9K8 0.423077 0.744444
187 N0B 0.422819 0.853659
188 6AD 0.422764 0.85
189 AYB 0.422535 0.821429
190 7D3 0.422414 0.844156
191 YLY 0.421769 0.821429
192 TSB 0.420635 0.809524
193 ODP 0.41958 0.922078
194 AV2 0.419355 0.855263
195 FB0 0.419355 0.775281
196 A5A 0.419355 0.819277
197 NNR 0.419048 0.739726
198 A A A 0.418605 0.918919
199 U A 0.417808 0.946667
200 649 0.417266 0.775281
201 NMN AMP PO4 0.416667 0.933333
202 SSA 0.416 0.790698
203 P5A 0.415385 0.755556
204 LSS 0.414062 0.772727
205 A2R 0.412698 0.918919
206 52H 0.412698 0.790698
207 JB6 0.412214 0.896104
208 5N5 0.411215 0.783784
209 YSA 0.410448 0.811765
210 53H 0.409449 0.790698
211 5CA 0.409449 0.790698
212 ITT 0.408333 0.878378
213 7D4 0.408333 0.844156
214 NA7 0.407692 0.894737
215 LEU LMS 0.407692 0.784091
216 5CD 0.407407 0.794521
217 0WD 0.406897 0.909091
218 A3P 0.40678 0.930556
219 HFD 0.406504 0.883117
220 AVV 0.40625 0.860759
221 RAB 0.40566 0.808219
222 XYA 0.40566 0.808219
223 ADN 0.40566 0.808219
224 FDA 0.405063 0.823529
225 GSU 0.40458 0.790698
226 7MC 0.404255 0.831325
227 NSS 0.403101 0.811765
228 6FA 0.402516 0.853659
229 PPS 0.4 0.817073
230 NVA LMS 0.4 0.784091
Ligand no: 2; Ligand: UFM; Similar ligands found: 97
No: Ligand ECFP6 Tc MDL keys Tc
1 GUD 1 1
2 GDU 1 1
3 UPG 1 1
4 UFM 1 1
5 USQ 0.8 0.846154
6 U2F 0.797619 0.943662
7 UPF 0.797619 0.943662
8 UFG 0.797619 0.943662
9 UD2 0.73913 0.985294
10 UD1 0.73913 0.985294
11 UGB 0.738636 0.985075
12 UGA 0.738636 0.985075
13 UDP 0.717949 0.941176
14 UDX 0.715909 0.970588
15 UAD 0.715909 0.970588
16 UTP 0.7125 0.941176
17 IUG 0.693878 0.835443
18 G3N 0.692308 0.942857
19 C5G 0.688889 0.943662
20 660 0.681818 0.956522
21 URM 0.681818 0.956522
22 UPU 0.670588 0.970149
23 EPZ 0.650485 0.971014
24 3UC 0.648936 0.943662
25 UNP 0.647059 0.914286
26 EPU 0.644231 0.957143
27 EEB 0.644231 0.957143
28 U5P 0.641026 0.926471
29 U 0.641026 0.926471
30 UD7 0.636364 0.956522
31 HP7 0.636364 0.970588
32 2GW 0.632653 0.957143
33 MJZ 0.63 0.942857
34 F5G 0.623762 0.956522
35 UD4 0.623762 0.942857
36 F5P 0.623762 0.942857
37 UPP 0.615385 0.942029
38 UDH 0.615385 0.866667
39 UDZ 0.615385 0.88
40 UMA 0.598214 0.971014
41 44P 0.597561 0.901408
42 UDM 0.59596 0.942857
43 HWU 0.592233 0.929577
44 12V 0.592233 0.929577
45 1GW 0.590476 0.917808
46 2KH 0.586207 0.914286
47 Y6W 0.585106 0.916667
48 UDP UDP 0.576471 0.911765
49 U22 0.567797 0.8375
50 U20 0.567797 0.858974
51 U21 0.567797 0.858974
52 URI 0.552632 0.865672
53 CJB 0.551282 0.850746
54 UP5 0.527273 0.855263
55 UAG 0.523438 0.917808
56 2QR 0.520325 0.848101
57 DAU 0.519608 0.891892
58 UA3 0.511905 0.911765
59 U3P 0.511905 0.911765
60 CSV 0.504762 0.878378
61 CSQ 0.504762 0.878378
62 4TC 0.504425 0.833333
63 U U 0.5 0.927536
64 4RA 0.492308 0.857143
65 UD0 0.484848 0.846154
66 PUP 0.480392 0.887324
67 UML 0.478571 0.858974
68 U2P 0.476744 0.926471
69 CXY 0.471154 0.916667
70 GDD 0.463636 0.8
71 GKE 0.463636 0.8
72 GDC 0.463636 0.8
73 A U 0.461538 0.831169
74 HF4 0.447917 0.888889
75 CTP 0.447917 0.888889
76 CDP 0.446809 0.888889
77 ADQ 0.443396 0.828947
78 DKX 0.44186 0.774648
79 G U 0.441667 0.790123
80 U2S 0.43956 0.77027
81 UMF 0.438202 0.833333
82 U4S 0.433333 0.733333
83 DUT 0.43299 0.861111
84 U3S 0.423913 0.756757
85 5GW 0.421569 0.915493
86 DUD 0.421053 0.861111
87 5FU 0.417582 0.863014
88 C2G 0.417476 0.902778
89 UPA 0.416667 0.868421
90 U1S 0.415842 0.776316
91 7XL 0.415842 0.890411
92 U U U U 0.413462 0.913043
93 2TU 0.411765 0.777778
94 UTP U U U 0.409524 0.897059
95 139 0.406504 0.835443
96 APU 0.401639 0.831169
97 PMP UD1 0.40146 0.835443
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1UDB; Ligand: UFG; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 1udb.bio1) has 51 residues
No: Leader PDB Ligand Sequence Similarity
1 1SB8 UD2 44.0828
Pocket No.: 2; Query (leader) PDB : 1UDB; Ligand: UFG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1udb.bio1) has 51 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1UDB; Ligand: NAD; Similar sites found with APoc: 1
This union binding pocket(no: 3) in the query (biounit: 1udb.bio1) has 51 residues
No: Leader PDB Ligand Sequence Similarity
1 1SB8 UD2 44.0828
Pocket No.: 4; Query (leader) PDB : 1UDB; Ligand: NAD; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1udb.bio1) has 51 residues
No: Leader PDB Ligand Sequence Similarity
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