Receptor
PDB id Resolution Class Description Source Keywords
1TYW 1.8 Å NON-ENZYME: TOXIN_VIRAL STRUCTURE OF TAILSPIKE-PROTEIN ENTEROBACTERIA PHAGE P22 COMPLEX VIRAL ADHESION PROTEIN RECEPTOR ENDOGLYCOSIDASE CARBOHYDRATE CELL RECEPTOR RECOGNITION BINDING PROTEIN LIPOPOLYSACCHARIDE
Ref.: CRYSTAL STRUCTURE OF PHAGE P22 TAILSPIKE PROTEIN CO WITH SALMONELLA SP. O-ANTIGEN RECEPTORS. PROC.NATL.ACAD.SCI.USA V. 93 10584 1996
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
RAM MAN GLA TYV RAM GLC MAN GLA TYV B:1;
 Valid;
 none;
 submit data
1381.29 n/a O(C1C...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1TYU 1.8 Å NON-ENZYME: TOXIN_VIRAL STRUCTURE OF TAILSPIKE-PROTEIN ENTEROBACTERIA PHAGE P22 COMPLEX VIRAL ADHESION PROTEIN RECEPTOR ENDOGLYCOSIDASE CARBOHYDRATE CELL RECEPTOR RECOGNITION BINDING PROTEIN LIPOPOLYSACCHARIDE
Ref.: CRYSTAL STRUCTURE OF PHAGE P22 TAILSPIKE PROTEIN CO WITH SALMONELLA SP. O-ANTIGEN RECEPTORS. PROC.NATL.ACAD.SCI.USA V. 93 10584 1996
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 64 families.
1 1TYW - RAM MAN GLA TYV RAM GLC MAN GLA TYV n/a n/a
2 1TYU - RAM MAN GLA TYV RAM MAN GLA TYV n/a n/a
3 1TYX - RAM MAN GLA ABE RAM MAN GLA ABE n/a n/a
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 44 families.
1 1TYW - RAM MAN GLA TYV RAM GLC MAN GLA TYV n/a n/a
2 1TYU - RAM MAN GLA TYV RAM MAN GLA TYV n/a n/a
3 1TYX - RAM MAN GLA ABE RAM MAN GLA ABE n/a n/a
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 36 families.
1 1TYW - RAM MAN GLA TYV RAM GLC MAN GLA TYV n/a n/a
2 1TYU - RAM MAN GLA TYV RAM MAN GLA TYV n/a n/a
3 1TYX - RAM MAN GLA ABE RAM MAN GLA ABE n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: RAM MAN GLA TYV RAM GLC MAN GLA TYV; Similar ligands found: 16
No: Ligand ECFP6 Tc MDL keys Tc
1 RAM MAN GLA TYV RAM GLC MAN GLA TYV 1 1
2 RAM MAN GLA ABE RAM MAN GLA ABE 0.857143 1
3 RAM MAN GLA ABE 0.825581 0.973684
4 RAM MAN GLA ABE RAM MAN GLA 0.804124 1
5 MMA GLA ABE 0.576087 0.948718
6 MAN GLA ABE 0.526316 0.947368
7 BGC GAL FUC GLA 0.50505 0.894737
8 FUC GAL 0.494253 0.868421
9 GLC GAL NAG GAL FUC GLA 0.452991 0.714286
10 NAG GAL FUC GLA 0.427273 0.714286
11 BGC FUC GAL FUC A2G 0.424779 0.734694
12 BGC GAL FUC A2G 0.421053 0.714286
13 BGC FUC GAL 0.418367 0.894737
14 GLC BGC FUC GAL 0.418367 0.894737
15 GLC GAL NAG GAL FUC A2G 0.41129 0.705882
16 BGC FUC GAL NAG GAL 0.40678 0.714286
Similar Ligands (3D)
Ligand no: 1; Ligand: RAM MAN GLA TYV RAM GLC MAN GLA TYV; Similar ligands found: 1
No: Ligand Similarity coefficient
1 RAM MAN GLA TYV RAM MAN GLA TYV 0.8635
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1TYU; Ligand: RAM MAN GLA TYV RAM MAN GLA TYV; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1tyu.bio1) has 26 residues
No: Leader PDB Ligand Sequence Similarity
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