Receptor
PDB id Resolution Class Description Source Keywords
1SYO 2.2 Å NON-ENZYME: TRANSPORT N-TERMINAL 3 DOMAINS OF CI-MPR BOUND TO MANNOSE 6-PHOSPHATE BOS TAURUS LECTIN; RECEPTOR; MANNOSE 6-PHOSPHATE PROTEIN TRANSPORTSUGBINDING PROTEIN
Ref.: THE N-TERMINAL CARBOHYDRATE RECOGNITION SITE OF THE CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR J.BIOL.CHEM. V. 279 34000 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:4005;
B:4006;
Invalid;
Invalid;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
M6P A:500;
B:1500;
Valid;
Valid;
none;
none;
Kd ~ 1 nM
260.136 C6 H13 O9 P C([C@...
NAG A:601;
B:1501;
B:1601;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
submit data
221.208 C8 H15 N O6 CC(=O...
NDG NAG BMA A:501;
Part of Protein;
none;
submit data n/a n/a n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1SZ0 2.1 Å NON-ENZYME: TRANSPORT N-TERMINAL 3 DOMAINS OF CI-MPR BOUND TO MANNOSE 6-PHOSPHATE BOS TAURUS LECTIN; RECEPTOR; MANNOSE 6-PHOSPHATE PROTEIN TRANSPORTSUGBINDING PROTEIN
Ref.: THE N-TERMINAL CARBOHYDRATE RECOGNITION SITE OF THE CATION-INDEPENDENT MANNOSE 6-PHOSPHATE RECEPTOR J.BIOL.CHEM. V. 279 34000 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 199 families.
1 1SZ0 Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
2 1SYO Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 166 families.
1 1SZ0 Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
2 1SYO Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 141 families.
1 1SZ0 Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
2 1SYO Kd ~ 1 nM M6P C6 H13 O9 P C([C@@H]1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: M6P; Similar ligands found: 52
No: Ligand ECFP6 Tc MDL keys Tc
1 M6P 1 1
2 BG6 1 1
3 G6P 1 1
4 M6D 1 1
5 BGP 1 1
6 A6P 1 1
7 RP5 0.8 0.902439
8 HSX 0.8 0.902439
9 ABF 0.8 0.902439
10 AHG 0.621622 0.795455
11 GLP 0.590909 0.829787
12 4R1 0.590909 0.829787
13 RF5 0.571429 0.8
14 50A 0.571429 0.8
15 4QY 0.55102 0.75
16 BMX 0.55102 0.75
17 16G 0.55102 0.75
18 GRF 0.547619 0.692308
19 NNG 0.530612 0.75
20 1FT 0.517857 0.847826
21 FDQ 0.511111 0.777778
22 G16 0.5 0.951219
23 PRP 0.5 0.880952
24 T6P 0.470588 0.906977
25 D6G 0.468085 0.951219
26 P3M 0.466667 0.906977
27 GLA 0.461538 0.675
28 GIV 0.461538 0.675
29 WOO 0.461538 0.675
30 GLC 0.461538 0.675
31 ALL 0.461538 0.675
32 BGC 0.461538 0.675
33 GXL 0.461538 0.675
34 GAL 0.461538 0.675
35 BMA 0.461538 0.675
36 MAN 0.461538 0.675
37 GLA BGC 0.45098 0.674419
38 BGC GLA 0.45098 0.674419
39 GLA BMA 0.45098 0.674419
40 LAK 0.45098 0.674419
41 GAL GAL 0.45098 0.674419
42 BMA GLA 0.45098 0.674419
43 MAN BMA 0.45098 0.674419
44 GLA GLC 0.45098 0.674419
45 MLB 0.45098 0.674419
46 N 0.444444 0.777778
47 PPC 0.442308 0.822222
48 GLC GLC GLC 0.433962 0.674419
49 MAN MAN MAN 0.433962 0.674419
50 GLC GLC GLC GLC BGC 0.433962 0.674419
51 GLC GLC GLC GLC GLC BGC 0.433962 0.674419
52 GLC GLC 0.423077 0.707317
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1SZ0; Ligand: M6P; Similar sites found: 12
This union binding pocket(no: 1) in the query (biounit: 1sz0.bio1) has 11 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5INJ 6C7 0.01235 0.40845 1.48148
2 1XIM XYL 0.01104 0.41788 2.29008
3 4N14 WR7 0.003244 0.41468 2.54777
4 1GQG DCD 0.01334 0.41427 2.57143
5 4C1K PEP 0.005562 0.42252 3.43511
6 3HF3 FMN 0.01374 0.41742 4.58453
7 1FP1 HCC 0.01945 0.40918 5.64516
8 4MLO PAM 0.01361 0.41583 6.15942
9 1Y0G 8PP 0.04677 0.40553 6.80628
10 4XQM MAN 0.00000004 0.6858 13.8298
11 3AIH BMA MAN MAN 0.000002751 0.5711 19.3548
12 1M6P M6P 0.000006714 0.50619 34.2105
Pocket No.: 2; Query (leader) PDB : 1SZ0; Ligand: M6P; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1sz0.bio1) has 11 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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