Receptor
PDB id Resolution Class Description Source Keywords
1SL6 2.25 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A FRAGMENT OF DC-SIGNR (CONTAING THE CA RECOGNITION DOMAIN AND TWO REPEATS OF THE NECK) COMPLEXED WX . HOMO SAPIENS DC-SIGNR C-TYPE LECTIN SUGAR BINDING PROTEIN
Ref.: STRUCTURAL BASIS FOR DISTINCT LIGAND-BINDING AND TA PROPERTIES OF THE RECEPTORS DC-SIGN AND DC-SIGNR NAT.STRUCT.MOL.BIOL. V. 11 591 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA A:1;
A:2;
A:3;
A:4;
B:1;
B:2;
B:3;
B:4;
C:1;
C:2;
C:3;
C:4;
D:1;
D:2;
D:3;
D:4;
E:1;
E:2;
E:3;
E:4;
F:1;
F:2;
F:3;
F:4;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
40.078 Ca [Ca+2...
NDG FUC GAL L:1;
J:1;
I:1;
K:1;
G:1;
H:1;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1SL6 2.25 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF A FRAGMENT OF DC-SIGNR (CONTAING THE CA RECOGNITION DOMAIN AND TWO REPEATS OF THE NECK) COMPLEXED WX . HOMO SAPIENS DC-SIGNR C-TYPE LECTIN SUGAR BINDING PROTEIN
Ref.: STRUCTURAL BASIS FOR DISTINCT LIGAND-BINDING AND TA PROPERTIES OF THE RECEPTORS DC-SIGN AND DC-SIGNR NAT.STRUCT.MOL.BIOL. V. 11 591 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 552 families.
1 1SL6 - NDG FUC GAL n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 426 families.
1 1SL6 - NDG FUC GAL n/a n/a
50% Homology Family (29)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 322 families.
1 4N33 - GAL NAG n/a n/a
2 3P5I - NAG G6S n/a n/a
3 3P5H - BGC BGC n/a n/a
4 4N37 - MMA C7 H14 O6 CO[C@@H]1[....
5 4N34 - 2F8 C9 H17 N O6 CC(=O)N[C@....
6 3P5E - MAN C6 H12 O6 C([C@@H]1[....
7 6PWR - MAN NAG n/a n/a
8 6PWS Ki = 1.6 mM MMA C7 H14 O6 CO[C@@H]1[....
9 5G6U ic50 = 0.22 uM SGN C6 H13 N O11 S2 C([C@@H]1[....
10 5VYB - BMA MAN MAN MAN MAN MAN MAN n/a n/a
11 1SL5 - GAL NAG FUC GAL n/a n/a
12 2IT5 - MAN MAN MAN n/a n/a
13 6LFJ Kd = 140 uM MAN IPD MAN n/a n/a
14 1K9J - MAN MAN MAN NAG NAG n/a n/a
15 1SL4 - MAN MAN MAN MAN n/a n/a
16 2IT6 - MAN MAN n/a n/a
17 1K9I - MAN MAN MAN NAG NAG n/a n/a
18 6GHV Kd = 52 uM EZ8 C35 H48 Cl N6 O10 c1cc(ccc1C....
19 3VYK Kd = 0.000023 M MMA MAN NAG MAN NAG NAG n/a n/a
20 4KZV - GLC GLC n/a n/a
21 4ZRV - GLC U8V n/a n/a
22 5KTH - GLC GLC 6X7 6X7 n/a n/a
23 5KTI - GLC GLC 6X6 n/a n/a
24 2OX9 - NAG FUC GAL n/a n/a
25 4ZES Ki = 9.4 mM MMA C7 H14 O6 CO[C@@H]1[....
26 3WH2 - FLC C6 H5 O7 C(C(=O)[O-....
27 5JPV - GLC GAL n/a n/a
28 5JQ1 - ZPF C9 H15 N O6 CC(=O)N[C@....
29 1SL6 - NDG FUC GAL n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: NDG FUC GAL; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: NDG FUC GAL; Similar ligands found: 9
No: Ligand Similarity coefficient
1 NDG FUC GAL 1.0000
2 NAG FUC GAL 0.9753
3 MAG FUC GAL 0.9323
4 NAG GAL FUC 0.9217
5 BGC FUC GAL 0.9021
6 NDG GAL FUC 0.8928
7 MAG FUC SGA 0.8868
8 NAG FUC SGA 0.8867
9 MAG FUC G4S 0.8810
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1SL6; Ligand: NDG FUC GAL; Similar sites found with APoc: 2
This union binding pocket(no: 1) in the query (biounit: 1sl6.bio6) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1PWB GLC 25.4237
2 1PWB GLC GLC 25.4237
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