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Receptor
PDB id Resolution Class Description Source Keywords
1SKQ 1.8 Å NON-ENZYME: TRANSCRIPT_TRANSLATE THE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS ELONGATION ALPHA IN COMPLEX WITH MAGNESIUM AND GDP SULFOLOBUS SOLFATARICUS ELONGATION FACTORS ARCHAEA PROTEIN SYNTHESIS TRANSLATION
Ref.: THE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS EL FACTOR 1ALPHA IN COMPLEX WITH MAGNESIUM AND GDP. BIOCHEMISTRY V. 43 6630 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:500;
B:501;
Valid;
Valid;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:502;
Part of Protein;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1SKQ 1.8 Å NON-ENZYME: TRANSCRIPT_TRANSLATE THE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS ELONGATION ALPHA IN COMPLEX WITH MAGNESIUM AND GDP SULFOLOBUS SOLFATARICUS ELONGATION FACTORS ARCHAEA PROTEIN SYNTHESIS TRANSLATION
Ref.: THE CRYSTAL STRUCTURE OF SULFOLOBUS SOLFATARICUS EL FACTOR 1ALPHA IN COMPLEX WITH MAGNESIUM AND GDP. BIOCHEMISTRY V. 43 6630 2004
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1SKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1JNY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 1SKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1JNY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 3WYA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (12)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5W76 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5W7Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 4LC0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1EXM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
5 2C78 - PUL C47 H66 O13 C[C@@H]1[C....
6 1EFT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
7 4LBV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4LBW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
9 1HA3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
10 1SKQ - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
11 1JNY - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
12 3WYA - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1SKQ; Ligand: GDP; Similar sites found with APoc: 684
This union binding pocket(no: 1) in the query (biounit: 1skq.bio1) has 15 residues
No: Leader PDB Ligand Sequence Similarity
1 4HSE ADP 1.25945
2 2O0J ADP 1.2987
3 1AQU A3P 1.3468
4 5TSH ANP 1.37931
5 5VHC BEF ADP 1.37931
6 5TSH ADP 1.37931
7 5XKT GNP 1.5
8 5T79 NDP 1.50602
9 2X77 GDP 1.5873
10 1OS1 PYR 1.6092
11 1OS1 ATP 1.6092
12 5VGR GDP 1.62413
13 2Y65 ADP 1.64384
14 4P4T GDP 1.66667
15 2XTZ GSP 1.69492
16 1X6V ADP 1.74603
17 4LIK CIT 1.78571
18 1YTM ATP 1.83908
19 1P9B GDP 1.83908
20 1CT9 GLN 1.83908
21 2ZE7 DST 1.97628
22 2ZE7 AMP 1.97628
23 1RRC ADP 1.99336
24 2C6Q NDP 1.9943
25 2XT3 ADP 2.03488
26 1FNN ADP 2.05656
27 5JCP GDP ALF 2.06897
28 1XKV ATP 2.06897
29 3HU3 AGS 2.06897
30 4YS0 ADP 2.06897
31 2V5K OXM 2.09059
32 6B4K ANP 2.09302
33 4XFR CIT 2.10773
34 2PZ8 APC 2.11268
35 1XP8 AGS 2.18579
36 5CK5 GDP 2.21519
37 1XMV ADP 2.24719
38 4PPF FLC 2.28571
39 1T5C ADP 2.29226
40 2ZR9 DTP 2.29226
41 5I34 GDP 2.29885
42 1LVK MNT BEF 2.29885
43 2FSH ANP 2.29885
44 5WRJ A3P 2.31023
45 5WC2 ADP 2.31481
46 1K6M AGS 2.31481
47 4OHY ANP 2.32019
48 3ITJ FAD 2.36686
49 3ITJ CIT 2.36686
50 5TIV A3P 2.37154
51 3QVV 3QV 2.37288
52 3QVV A3P 2.37288
53 3FKQ ATP 2.41287
54 3COB ADP 2.43902
55 5J1J ANP 2.45614
56 3T34 GDP 2.5
57 1JI0 ATP 2.5
58 2RCN GDP 2.51397
59 4PFO ADP 2.52874
60 5HR5 ADP 2.52874
61 4IHQ ADP 2.52874
62 5MZN ADP 2.52874
63 2ZPA ADP 2.52874
64 5L3W GDP 2.61438
65 1SVM ATP 2.65252
66 2JJK R15 2.66272
67 2GWH A3P 2.68456
68 4XT8 TMQ 2.71318
69 2QQ0 ANP 2.71739
70 2QQ0 THM 2.71739
71 2QQ0 TMP 2.71739
72 2QQ0 ADP 2.71739
73 1VHT BA3 2.75229
74 1G41 ADP 2.75862
75 4IOK ADP 2.75862
76 2XAU ADP 2.75862
77 4IOK XPO 2.75862
78 1BG2 ADP 2.76923
79 1R0X ATP 2.7972
80 2FNA ADP 2.80112
81 2WW4 ADP 2.82686
82 1M7G ADX 2.8436
83 1M7G AV2 2.8436
84 1M7G ADP 2.8436
85 3ZFD ANP 2.849
86 4M7V NAP 2.85714
87 4GOX A3P 2.8754
88 5HGZ ACO 2.88066
89 1JJV ATP 2.91262
90 4LYA ATP 2.98851
91 5XDR ADP 2.98851
92 1QHG ATP 2.98851
93 3UIE ANP 3
94 5N6C NAD 3
95 4B5P ACO 3
96 5FHD ADP ALF 3.00231
97 5FTB ANP 3.00231
98 5NM7 GLY 3.00752
99 1I0B PEL 3.01205
100 2OZE AGS 3.02013
101 1E2K TMC 3.02115
102 1FWY UD1 3.02115
103 1G6O ADP 3.0303
104 5LLB 6YZ 3.04183
105 5HCN GCP 3.06513
106 4KOT CE3 3.08642
107 2NCD ADP 3.09524
108 4V03 ADP 3.11284
109 1DAK DPU 3.125
110 1DAK ADP 3.125
111 3GJ0 GDP 3.16742
112 4ITM ATP 3.1746
113 4Q1A 2XZ 3.21429
114 4Q1A UDP 3.21429
115 1M2O GNP 3.21839
116 1F5N GNP 3.21839
117 1Z6T ADP 3.21839
118 4YJ1 ADP 3.21839
119 1R6B ADP 3.21839
120 3RC3 ANP 3.21839
121 1KUV CA5 3.21839
122 3SXN COA 3.21839
123 4AF0 IMP 3.21839
124 3CV2 OXL 3.21839
125 1IBR GNP 3.24074
126 4ZNL BEF ADP 3.28467
127 4AVB ACO 3.3033
128 1D2N ANP 3.30882
129 2OFW ADX 3.36538
130 1VG8 GNP 3.38164
131 1VG0 GDP 3.38164
132 1G3M PCQ 3.40136
133 1G3M A3P 3.40136
134 5GVR LMR 3.4188
135 6A20 ADP 3.44828
136 2WHX ADP 3.44828
137 4BFW ZVW 3.44828
138 6B8B ADP 3.44828
139 5Y6N ADP 3.44828
140 2JLR ANP 3.44828
141 5YGE ACO 3.44828
142 2W58 ADP 3.46535
143 5HH0 COA 3.5
144 4NE2 ADP 3.59281
145 4NE2 SH2 3.59281
146 5M04 GDP 3.61111
147 3MD0 GDP 3.66197
148 3LRE ADP 3.66197
149 5ZXD ATP 3.67816
150 1Q20 A3P 3.67893
151 1Q20 PLO 3.67893
152 1ION ADP 3.7037
153 6APV 3L4 3.7037
154 1QSN COA 3.7037
155 4JLV ADP 3.71747
156 2ZPT A3P 3.72881
157 3F8K COA 3.75
158 1J99 AND 3.75427
159 4TMK T5A 3.75587
160 3MGB PAP 3.76176
161 5X40 ACP 3.76712
162 3EZ2 ADP 3.76884
163 3EC1 GDP 3.79404
164 1NRJ GTP 3.79747
165 5IFS ADP 3.79747
166 2YOH WMJ 3.80952
167 4QRH 0O2 3.80952
168 4NON GDP 3.84615
169 1VKJ A3P 3.85965
170 1OFH ADP 3.87097
171 1SQ5 ADP 3.8961
172 1V8K ANP 3.90244
173 5LTJ ADP 3.90805
174 1Q19 APC 3.90805
175 6GVZ CHO 3.93443
176 3IUY AMP 3.94737
177 2HF9 GSP 3.9823
178 5ZBR ANP 4
179 5L3V GDP 4.01338
180 5L3S GNP 4.02685
181 1F9V ADP 4.03458
182 2B8T THM 4.03587
183 5MEX SZZ 4.03727
184 5MEX PAP 4.03727
185 1F6B GDP 4.0404
186 1CR1 TTP 4.05405
187 3BFV ADP 4.05904
188 2IXE ATP 4.05904
189 2J5V PCA 4.08719
190 4KBF AMP 4.10959
191 3P4X ADP 4.11622
192 4KVA GTP 4.12621
193 2FAH GDP 4.13793
194 2GMV UN8 4.13793
195 1NHX FTB 4.13793
196 1NHX PEP 4.13793
197 2GMV PEP 4.13793
198 2ZJ5 ADP 4.13793
199 4NU0 AP5 4.14747
200 4LC1 GDP 4.1543
201 4DKX GDP 4.16667
202 3H86 AP5 4.16667
203 4FCW ADP 4.18006
204 2NGR GDP 4.18848
205 1GRN GDP 4.18848
206 4ITR GDP 4.18848
207 2QZ4 ADP 4.19847
208 2WMO GTP 4.21053
209 4NSQ COA 4.21053
210 1G3Q ADP 4.21941
211 3Q9L ATP 4.23077
212 2J0V GDP 4.24528
213 4MXP DB4 4.26829
214 1X8J A3P 4.2735
215 3BD9 A3P 4.28571
216 1NST A3P 4.30769
217 1TAD GDP 4.32099
218 1TAD ALF 4.32099
219 2OBM ADP 4.32277
220 5BSH PRO 4.33213
221 4KAX GTP 4.34783
222 4ZG4 VO4 ADP 4.36782
223 2BIF SIN 4.36782
224 2BIF ANP 4.36782
225 6C90 ADP 4.36782
226 3TBK ANP 4.36782
227 4I9B 1KA 4.36782
228 2ZFI ADP 4.37158
229 3ORF NAD 4.38247
230 3BFX A3P 4.39189
231 4FRZ ADP 4.40415
232 6G14 G4P 4.42177
233 4PX9 ADP 4.45205
234 4WZ6 ATP 4.48276
235 5G41 AP5 4.4843
236 2FJU GSP 4.49438
237 6AU6 GDP 4.50928
238 1S8F GDP 4.51977
239 3B5J 12D 4.52675
240 1WA5 GTP 4.5977
241 5M7P ADP 4.5977
242 4IDN GNP 4.5977
243 1OYY AGS 4.5977
244 2VTD LKM 4.5977
245 4H1V GNP 4.60705
246 1ZIN AP5 4.60829
247 1PUJ GNP 4.60993
248 3PQC GDP 4.61538
249 3A1S GDP 4.65116
250 5U32 GDP 4.66102
251 2VB6 ADP BEF 4.69799
252 2XTN GTP 4.70085
253 2ORV 4TA 4.70085
254 2A5J GDP 4.71204
255 3QKT ANP 4.71976
256 2WPW ACO 4.71976
257 3Q85 GNP 4.73373
258 2OG2 MLI 4.73538
259 5KUT GDP 4.7619
260 1CM0 COA 4.7619
261 1T8U A3P 4.77941
262 1T8U UAP SGN IDS SGN 4.77941
263 1OE0 TTP 4.78261
264 2WOJ ADP ALF 4.80226
265 2CE7 ADP 4.82759
266 1T9D PYD 4.82759
267 1T9D P25 4.82759
268 1T9D FAD 4.82759
269 4ZDJ UTP 4.82759
270 1TQ4 GDP 4.84262
271 2VVG ADP 4.85714
272 3E70 GDP 4.87805
273 4U00 ADP 4.91803
274 1RYH GNP 4.92611
275 3N5C GDP 4.93827
276 3PCR GTP 4.93827
277 1D5C GDP 4.93827
278 4D81 ADP 4.947
279 6CS8 F9Y 4.9505
280 3QXC ATP 4.95868
281 3DEF GDP 4.96183
282 2GCN GDP 4.97512
283 2GCO GNP 4.97512
284 2Y8E GNP 5.02793
285 4U5X GNP 5.05618
286 5LB3 ADP 5.05747
287 2GK6 ADP 5.05747
288 1P72 ADP 5.08982
289 3FWY ADP 5.09554
290 1UJ2 ADP 5.15873
291 1UJ2 C5P 5.15873
292 1Z0A GDP 5.17241
293 2JEV NHQ 5.17241
294 6H5E ANP 5.17928
295 2A5F GTP 5.18135
296 1OW3 GDP 5.18135
297 5KF9 ACO 5.18293
298 5TVJ COA 5.21327
299 3B7G ANP 5.21739
300 3ZQ6 ADP ALF 5.24691
301 2FFQ GSP 5.26316
302 1UPT GTP 5.26316
303 2B4D COA 5.26316
304 4MKF AP5 5.28736
305 1YZQ GNP 5.29412
306 2GDJ ANP 5.30303
307 5E5U MLI 5.30303
308 4LJ9 ACP 5.30973
309 3CNL GNP 5.34351
310 1GOJ ADP 5.35211
311 2JAQ DCP 5.36585
312 1MH1 GNP 5.37634
313 5IRC GDP 5.37634
314 3A4M ADP 5.38462
315 3X1Z GNP 5.38922
316 4HDO GNP 5.38922
317 4D0N GDP 5.40541
318 5HPY GDP 5.40541
319 6BC0 GSP 5.40541
320 1CJW COT 5.42169
321 4XGU ADP 5.42453
322 3AQ4 GDP 5.43478
323 1KMQ GNP 5.43478
324 3TK1 GDP 5.45455
325 4YMU ATP 5.45455
326 1KAO GDP 5.51724
327 5KSZ GCP 5.51724
328 2C9O ADP 5.51724
329 3DC4 ADP 5.52326
330 1FZQ GDP 5.52486
331 1MR3 G3D 5.52486
332 4XOI GTP 5.55556
333 1H65 GDP 5.55556
334 1NJF AGS 5.6
335 1NJF ADP 5.6
336 3B9Q MLI 5.62914
337 1W4R TTP 5.64103
338 1TX4 ALF GDP 5.64972
339 2ODE ALF GDP 5.67376
340 2PZE ATP 5.67686
341 2Z5F A3P 5.7047
342 2CJW GDP 5.72917
343 1IWE IMP 5.74713
344 1W0J ADP 5.74713
345 1W0J ADP BEF 5.74713
346 2VOS ADP 5.74713
347 1A4R GDP 5.75916
348 1A4R GNH 5.75916
349 1XX6 ADP 5.75916
350 4HUT ATP 5.75916
351 4YLG GDP 5.78035
352 4LPS GDP 5.78512
353 2B8W ALF 5GP 5.79268
354 2F3R G5P 5.7971
355 4GOJ GNP 5.83333
356 5IRR GSP 5.84416
357 1GWN GTP 5.85366
358 3W5J GDP 5.88235
359 2PL3 ADP 5.9322
360 4XSH GSP 5.93607
361 1SVK ALF GDP 5.94901
362 4KVG GTP 5.95238
363 2EW1 GNP 5.97015
364 2BCG GDP 5.97701
365 1P3D ANP 5.97701
366 1GQY ACP 5.97701
367 1WF3 GNP 5.98007
368 1S3G AP5 5.99078
369 1CXZ GSP 6.04396
370 3VX3 ADP 6.04839
371 2G77 GDP 6.06061
372 1RE0 GDP 6.09756
373 1S9D GDP 6.09756
374 3TKL GTP 6.12245
375 3DKP ADP 6.12245
376 1JJ7 ADP 6.15385
377 5MVR ADP 6.17284
378 3N7O N7O 6.19469
379 1X1R GDP 6.2069
380 4PJ3 ANP 6.2069
381 4WOP CTP 6.22222
382 4BQS K2Q 6.25
383 4BQS ADP 6.25
384 1KO8 6PG 6.28571
385 3IO3 ADP 6.32184
386 2CBZ ATP 6.32911
387 1Z06 GNP 6.34921
388 2VWT PYR 6.36704
389 5BW4 SAM 6.36704
390 1Y3A GDP 6.38298
391 1HSR BHO 6.39535
392 1UKZ ADP 6.40394
393 4R43 GDP 6.43678
394 1YQT ADP 6.43678
395 2DPY ADP 6.43678
396 5YV5 ADP 6.43678
397 4MKG AP5 6.45161
398 2OM2 GDP 6.46154
399 1YZN GNP 6.48649
400 1YRB GDP 6.48855
401 4GBM A3P 6.50155
402 1M7B GTP 6.52174
403 3EWA ANP 6.52174
404 5N69 ADP 6.53266
405 5BYK OAQ 6.56371
406 5BYK A3P 6.56371
407 2J59 GTP 6.62651
408 1O3Y GTP 6.62651
409 3SFV GDP 6.62983
410 5G3Y ADP 6.63717
411 1BH2 GSP 6.66667
412 3H4S ADP 6.66667
413 5H68 AGS 6.76471
414 3LXR GDP 6.77083
415 4RZ3 ADP 6.77966
416 2IL4 COA 6.79612
417 2D2F ADP 6.8
418 3NKV GNP 6.85714
419 2QEN ADP 6.85714
420 5GOE GDP 6.87204
421 5WRI A3P 6.875
422 2HT6 GDP 6.89655
423 3QBT GNP 6.89655
424 3TNF GNP 6.89655
425 4OI4 ATP 6.95652
426 4X8O AP5 7.00935
427 5WDR GNP 7.01754
428 4BAS GNP 7.03518
429 1GP2 GDP 7.04225
430 2ZEJ GDP 7.06522
431 1LVG ADP 7.07071
432 3KJI ADP 7.08661
433 3JVH HHV 7.10383
434 2GKS ADP 7.12644
435 1XEX ATP 7.14286
436 3KTA AP5 7.14286
437 1BO4 COA 7.14286
438 3NHB ADP 7.18954
439 3FVQ ATP 7.24234
440 5L3R GCP 7.30897
441 6CRK GDP 7.33591
442 5BN3 ADP 7.35632
443 4A4Z ANP 7.35632
444 6DEF GCP 7.41688
445 2CDN ADP 7.46269
446 4LHW GNP 7.47126
447 2D7D ADP 7.5
448 2GJ8 ALF GDP 7.55814
449 1IHU AF3 7.58621
450 1IHU ADP 7.58621
451 5AK0 8V1 7.58621
452 4QM7 GTP 7.60234
453 5O74 GDP 7.61421
454 3RAB GNP 7.69231
455 1GXU 2HP 7.69231
456 4KVX ACO 7.69231
457 1ZUI SKM 7.7381
458 1G6H ADP 7.7821
459 2W83 GTP 7.79221
460 6C0B MLI 7.81609
461 3DDC GNP 7.83133
462 1G4U GDP 7.8329
463 2VBQ BSJ 7.87879
464 1ZD9 GDP 7.97872
465 1ZJ6 G3D 8.02139
466 2W9S NDP 8.07453
467 3RLF ANP 8.13648
468 2AWN ADP 8.13648
469 1Y63 ADP 8.15217
470 1FQK GDP 8.16327
471 2Q2Y ADP 8.17439
472 2Q2Y MKR 8.17439
473 1AKY AP5 8.18182
474 5EE5 GTP 8.18713
475 1G16 GDP 8.23529
476 5K04 COA 8.27586
477 1Z2A GDP 8.33333
478 5J1S ATP 8.3682
479 5UIV ADP 8.37004
480 1CS4 GSP 8.37563
481 1B0U ATP 8.39695
482 5K2M ADP 8.42491
483 2IYL GDP 8.4507
484 1R4A GNP 8.48485
485 5Z2M GTP 8.52273
486 3T5G GDP 8.55263
487 1VG1 GDP 8.64865
488 1VG9 GDP 8.64865
489 5BXQ GDP 8.66142
490 4YC7 GNP 8.66142
491 1RJ9 GCP 8.66667
492 4R3L COA 8.67052
493 1QF9 ALF 8.76289
494 1QF9 C5P 8.76289
495 1QF9 ADP 8.76289
496 2ZTS ADP 8.76494
497 3BER AMP 8.83534
498 3IIJ ADP 8.88889
499 1YZG GDP 8.93855
500 5OCG GNP 8.99471
501 2WKQ GTP 9.03614
502 1Z83 AP5 9.18367
503 5TB5 GDP 9.18919
504 5TAR GDP 9.18919
505 5OEC GDP 9.28962
506 1L2T ATP 9.3617
507 1Z08 GNP 9.41177
508 4CVN ADP 9.42408
509 5KSP GDP 9.47368
510 6FA4 GNP 9.82659
511 1MKY GDP 9.88506
512 4DCT GDP 9.88506
513 1TU3 GNP 9.94152
514 1R2Q GNP 10
515 4R2I ANP 10
516 5H67 ATP 10
517 5UQW GDP 10.0529
518 5E95 GDP 10.119
519 1GUA GNP 10.1796
520 6D5E GNP 10.1796
521 6D5J GNP 10.1796
522 6BVJ GNP 10.1796
523 6D59 GNP 10.1796
524 6BVL GNP 10.1796
525 6D56 GNP 10.1796
526 6D5H GNP 10.1796
527 6D55 GNP 10.1796
528 6D5L GNP 10.1796
529 6D5V GNP 10.1796
530 6D5G GNP 10.1796
531 6BVI GNP 10.1796
532 6BVK GNP 10.1796
533 6BVM GNP 10.1796
534 6D5M GNP 10.1796
535 2QTV GNP 10.2041
536 1CLU DBG 10.241
537 3KUD GDP 10.241
538 1WQ1 GDP 10.241
539 1NVV GNP 10.241
540 4TL6 ANP 10.2767
541 2I4I AMP 10.3118
542 6FAA ADP 10.3448
543 3V2U ATP 10.3448
544 4KFU ACP 10.3774
545 2C5L GTP 10.4046
546 3DOE GTP 10.4167
547 5K5Z ANP 10.5096
548 2QG6 NMN 10.5528
549 5IRN ADP 10.5747
550 5I0H ADP BEF 10.5747
551 5LEF GTP 10.6061
552 5ZB0 ADP 10.6061
553 5ZB0 TYD 10.6061
554 1BOB ACO 10.625
555 3MJH GTP 10.7143
556 1KSH GDP 10.7527
557 5LS7 ACO 10.7843
558 2UZI GTP 10.8434
559 1PVN MZP 10.9043
560 4K81 GTP 11.1111
561 3TMK T5A 11.1111
562 5O2T GSP 11.2426
563 1OXV ANP 11.3314
564 3WYF GTP 11.3445
565 5DI3 GNP 11.4068
566 4TTQ ATP 11.4943
567 3CH5 GDP 11.5385
568 1B7T ADP 11.5385
569 1QF5 GDP 11.6009
570 1QF5 RPL 11.6009
571 1ZUA NAP 11.6719
572 1ZUA TOL 11.6719
573 3GJX GTP 11.7241
574 5WLB GNP 11.7647
575 2A9K GDP 11.7647
576 3REF GDP 11.8557
577 1FQJ GDP 11.9048
578 6BCA GSP 11.9205
579 1HTW ADP 12.0253
580 5BQ5 ADP BEF 12.1693
581 4XTR ATP 12.1739
582 4XTR ADP 12.1739
583 4XVU ATP 12.1739
584 6BSX E7S 12.3596
585 6BSX GDP 12.3596
586 1UAD GNP 12.5714
587 2EFE GNH 12.7072
588 4ZI2 GNP 12.782
589 3D2M COA 12.8736
590 1KK8 BEF ADP 12.9496
591 2KIN ADP 13
592 3M1I GTP 13.089
593 1U8Z GDP 13.0952
594 4E03 ADP 13.1068
595 1FP6 ADP 13.1488
596 4DID GDP 13.1579
597 4M9Q GNP 13.2159
598 1SVI GDP 13.3333
599 1XPJ TLA 13.4921
600 5KDO GDP 13.5135
601 2RGX AP5 13.5922
602 1GOT GDP 13.6986
603 4WZA ADP 13.7681
604 4WZA ACP 13.7681
605 3BC1 GNP 13.8462
606 2V7Q ATP 14
607 2CK3 ANP 14
608 2CK3 ADP 14
609 2V7Q ADP 14
610 1VM6 NAD 14.0351
611 4AG5 ADP 14.2857
612 3CPJ GDP 14.3498
613 3AB3 GDP 14.3646
614 1ZCB GDP 14.3646
615 1Z0K GTP 14.4928
616 1Z0F GDP 14.5251
617 4UXH T5A 14.6739
618 3ZIA ATP 14.7482
619 3ZIA ADP 14.7482
620 1LFD GNP 14.9425
621 3F8D FAD 15.1703
622 2IS6 ADP 15.1724
623 1NF3 GNP 15.3846
624 1J2J GTP 15.5556
625 4HI0 GDP 15.5779
626 2F9L GDP 15.5779
627 1DS6 GDP 15.625
628 1WDT GTP 15.6322
629 1OIX GDP 15.7068
630 3E5H GNP 15.7303
631 3QF7 ANP 16
632 2BME GNP 16.129
633 1I4D GDP 16.1458
634 3T1O GDP 16.1616
635 3T12 GDP ALF 16.1616
636 3FB4 AP5 16.2037
637 2W2X GSP 16.2162
638 1OIV GDP 16.2304
639 1W7J ADP BEF 16.5563
640 3SBD GNP 16.5775
641 1E96 GTP 16.6667
642 5UPK GNP 16.7568
643 1Z0J GTP 17.0588
644 3RWO GDP 17.2973
645 5JCZ GDP 17.3184
646 2HV8 GTP 17.4419
647 4LX0 BEF GDP 17.5141
648 5XC5 GTP 17.6136
649 1HE1 GDP 17.6136
650 3CX8 GSP 17.7515
651 1YVD GNP 17.7515
652 4C4P GNP 17.9191
653 2D7C GTP 17.9641
654 2WIC GNP 17.9775
655 4R98 GNH 18.0812
656 1NN5 ANP 18.1395
657 1NN5 2DT 18.1395
658 2PEZ GGZ 18.4358
659 2PEZ DAT 18.4358
660 4YDS ATP 18.8596
661 5SZH GNP 18.9542
662 6BCB GSP 19.863
663 4H6U ACO 20
664 5H7J GCP 20.2299
665 1KY3 GDP 20.3297
666 3Q72 GNP 20.4819
667 2WJG GDP 20.7447
668 2FH5 GTP 21.4953
669 5H7K GDP 22.1662
670 3WYG GTP 22.3684
671 4D0G GTP 23.1884
672 2WJH GDP 23.494
673 2WJH FLC 23.494
674 1EK0 GNP 24.7059
675 3VPB ADP 25
676 3ZS9 ADP ALF 26.3158
677 1ZC3 GNP 26.5487
678 4HDQ GNP 26.9231
679 4PSW COA 28.9474
680 4ZKD GDP 31.2644
681 4TMZ GSP 33.3333
682 2VOH CIT 34.6154
683 4V0K GDP 36.0947
684 4J0Q GDP 48.9607
Pocket No.: 2; Query (leader) PDB : 1SKQ; Ligand: GDP; Similar sites found with APoc: 47
This union binding pocket(no: 2) in the query (biounit: 1skq.bio2) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 1ZEI CRS None
2 5AZ1 NDP 1.13314
3 4DP3 NDP 1.6092
4 4DP3 MMV 1.6092
5 5I60 67W 1.62602
6 2B6N ALA PRO THR 1.79856
7 3VM7 GLC 1.83908
8 3NTA FAD 1.83908
9 4U8P UDP 2.06897
10 5GLN XYP XYP XYP 2.32558
11 5FJJ MAN 2.75862
12 2BO4 FLC 2.77078
13 4M7V RAR 2.85714
14 3RG9 WRA 2.91667
15 3RG9 NDP 2.91667
16 3EEL 53T 3.0837
17 3ICC NAP 3.13725
18 2BL9 CP6 3.36134
19 2BL9 NDP 3.36134
20 2CVQ NDP 3.66972
21 3W9F I3P 3.67816
22 3IX9 NDP 3.68421
23 5LTJ BEF 3.90805
24 1YXM ADE 3.9604
25 3A76 SPD 3.97727
26 3NTD FAD 4.13793
27 4LAE 1VM 4.19162
28 4LAE NAP 4.19162
29 3HQ9 OXL 4.34783
30 2XZ9 PYR 4.62963
31 1J3I WRA 5.71429
32 1J3I NDP 5.71429
33 3Q9T FAY 5.97701
34 4H8N NDP 6.12903
35 5EW9 5VC 6.27306
36 2CJF RP4 6.36943
37 1ME8 RVP 6.75944
38 1AOE NDP 7.29167
39 1AOE GW3 7.29167
40 1DKU AP2 7.88644
41 1RJW ETF 10.0295
42 1WRA PC 10.7143
43 5XOY LYS 10.992
44 2Q46 NAP 11.8577
45 4DDY DN6 13.6882
46 3IA4 NDP 19.1358
47 1DCP HBI 21.1538
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