Receptor
PDB id Resolution Class Description Source Keywords
1RPN 2.15 Å EC: 4.2.1.47 CRYSTAL STRUCTURE OF GDP-D-MANNOSE 4,6-DEHYDRATASE IN COMPLE GDP AND NADPH PSEUDOMONAS AERUGINOSA SHORT-CHAIN DEHYDROGENASE/REDUCTASE ROSSMANN FOLD LYASE
Ref.: CRYSTAL STRUCTURE OF A TETRAMERIC GDP-D-MANNOSE 4,6-DEHYDRATASE FROM A BACTERIAL GDP-D-RHAMNOSE BIO PATHWAY. PROTEIN SCI. V. 13 529 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:1601;
B:1602;
C:1603;
D:1604;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
443.201 C10 H15 N5 O11 P2 c1nc2...
NDP A:1501;
B:1502;
C:1503;
D:1504;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1RPN 2.15 Å EC: 4.2.1.47 CRYSTAL STRUCTURE OF GDP-D-MANNOSE 4,6-DEHYDRATASE IN COMPLE GDP AND NADPH PSEUDOMONAS AERUGINOSA SHORT-CHAIN DEHYDROGENASE/REDUCTASE ROSSMANN FOLD LYASE
Ref.: CRYSTAL STRUCTURE OF A TETRAMERIC GDP-D-MANNOSE 4,6-DEHYDRATASE FROM A BACTERIAL GDP-D-RHAMNOSE BIO PATHWAY. PROTEIN SCI. V. 13 529 2004
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1RPN - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1RPN - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1RPN - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
2 2PK3 - GDD C16 H25 N5 O16 P2 c1nc2c(n1[....
3 1N7H - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
4 1N7G - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
5 5IN4 Kd = 11 uM 6CK C16 H22 F3 N5 O15 P2 c1nc2c(n1[....
6 1T2A - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
7 5IN5 Kd = 35 uM GFB C16 H25 N5 O15 P2 C[C@H]1[C@....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 153
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 GNP 0.839506 0.973684
6 G 0.828947 0.986486
7 5GP 0.828947 0.986486
8 G1R 0.82716 0.986667
9 GCP 0.82716 0.973684
10 GSP 0.817073 0.948718
11 GAV 0.797619 0.961039
12 GMV 0.792683 0.973684
13 G2P 0.77381 0.961039
14 G2R 0.770115 0.961039
15 GDP MG 0.759036 0.923077
16 GP2 0.756098 0.961039
17 GDP BEF 0.75 0.9
18 GDD 0.747253 0.961039
19 GKE 0.747253 0.961039
20 GDC 0.747253 0.961039
21 GPG 0.741573 0.961039
22 G3D 0.732558 0.986486
23 ALF 5GP 0.729412 0.888889
24 Y9Z 0.728261 0.902439
25 GTP MG 0.724138 0.923077
26 BEF GDP 0.724138 0.888889
27 G5P 0.723404 0.973684
28 GFB 0.72043 0.961039
29 GTG 0.72043 0.936709
30 GDR 0.72043 0.961039
31 G4P 0.715909 0.986486
32 GCP G 0.715909 0.935065
33 6CK 0.712766 0.936709
34 G3A 0.712766 0.973684
35 GDP ALF 0.7 0.888889
36 GDP AF3 0.7 0.888889
37 YGP 0.698925 0.901235
38 JB2 0.697917 0.961039
39 GKD 0.697917 0.961039
40 GDX 0.690722 0.973684
41 GPD 0.690722 0.925
42 GMP 0.684211 0.88
43 0O2 0.666667 0.986486
44 G G 0.659574 0.935065
45 JB3 0.656863 0.948718
46 NGD 0.650485 0.961039
47 GDP 7MG 0.636364 0.911392
48 DGI 0.636364 0.923077
49 U2G 0.634615 0.936709
50 GPX 0.634409 0.946667
51 IDP 0.632184 0.972973
52 2MD 0.632075 0.891566
53 CAG 0.62963 0.880952
54 CG2 0.622642 0.936709
55 FEG 0.619048 0.879518
56 MGD 0.614679 0.891566
57 ZGP 0.613208 0.869048
58 GH3 0.612903 0.973333
59 3GP 0.611765 0.946667
60 MD1 0.607143 0.891566
61 PGD 0.59292 0.925
62 DGT 0.591398 0.923077
63 BGO 0.588785 0.924051
64 TPG 0.582609 0.840909
65 DBG 0.582609 0.948718
66 2GP 0.574713 0.96
67 FE9 0.570175 0.776596
68 I2C FE2 CMO CMO 0.566372 0.808989
69 G A A A 0.553571 0.923077
70 MGP 0.553191 0.961039
71 U A G G 0.548673 0.935065
72 G4M 0.548387 0.880952
73 6G0 0.547368 0.961039
74 G1R G1R 0.542373 0.924051
75 P2G 0.527473 0.883117
76 PGD O 0.525 0.850575
77 ADP 0.522222 0.92
78 GGM 0.517544 0.901235
79 DG 0.516484 0.910256
80 DGP 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G G U 0.509259 0.935065
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 G C 0.504348 0.9
86 GPC 0.491525 0.879518
87 G7M 0.483871 0.948052
88 6AD 0.479592 0.841463
89 ATP 0.473684 0.92
90 G2Q 0.471154 0.961039
91 U G A 0.469697 0.888889
92 5FA 0.46875 0.92
93 AQP 0.46875 0.92
94 GTA 0.468468 0.936709
95 7DD 0.468085 0.906667
96 G G G RPC 0.466102 0.875
97 SGP 0.463158 0.82716
98 01G 0.462963 0.902439
99 B4P 0.457447 0.894737
100 AP5 0.457447 0.894737
101 A2D 0.456522 0.894737
102 G G G C 0.455285 0.9125
103 ACQ 0.454545 0.896104
104 5GP 5GP 0.454545 0.883117
105 ANP 0.454545 0.896104
106 A G C C 0.451613 0.911392
107 APC G U 0.45082 0.886076
108 G U34 0.449153 0.888889
109 DG DG 0.448598 0.865854
110 ITT 0.447917 0.868421
111 BA3 0.446809 0.894737
112 35G 0.444444 0.933333
113 C2E 0.444444 0.921053
114 PCG 0.444444 0.933333
115 MGO 0.441176 0.864198
116 AN2 0.4375 0.907895
117 G C C C 0.4375 0.924051
118 M33 0.43299 0.883117
119 UCG 0.429688 0.911392
120 A G U 0.42963 0.888889
121 ACP 0.428571 0.896104
122 MGQ 0.424528 0.935897
123 7DT 0.424242 0.906667
124 APR 0.424242 0.894737
125 AR6 0.424242 0.894737
126 93A 0.42268 0.833333
127 A4P 0.420168 0.869048
128 SAP 0.42 0.873418
129 AD9 0.42 0.896104
130 AGS 0.42 0.873418
131 G8D 0.42 0.875
132 CA0 0.418367 0.896104
133 ATF 0.417476 0.884615
134 AGO 0.414634 0.888889
135 NIA 0.413043 0.82716
136 MGV 0.412844 0.890244
137 TAT 0.411765 0.884615
138 A1R 0.411215 0.839506
139 ADQ 0.411215 0.871795
140 RGT 0.410714 0.909091
141 CGP 0.409836 0.86747
142 AMP 0.408602 0.893333
143 A 0.408602 0.893333
144 UP5 0.40678 0.873418
145 C2R 0.406593 0.906667
146 AMZ 0.406593 0.918919
147 JBT 0.405882 0.778947
148 A22 0.40566 0.907895
149 25L 0.405405 0.907895
150 ADX 0.40404 0.809524
151 8OD 0.401961 0.946667
152 4TC 0.4 0.851852
153 50T 0.4 0.883117
Ligand no: 2; Ligand: NDP; Similar ligands found: 159
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 DG1 0.68 1
8 1DG 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 2AM 0.529412 0.87013
23 6V0 0.519685 0.974026
24 NAP 0.514493 0.922078
25 EAD 0.507143 0.949367
26 A2D 0.504673 0.921053
27 TXE 0.503876 0.935897
28 NA0 0.496454 0.910256
29 TXD 0.496124 0.911392
30 SAP 0.495575 0.875
31 AGS 0.495575 0.875
32 P1H 0.493056 0.925926
33 CO7 0.489796 0.791209
34 TAP 0.489362 0.864198
35 PAP 0.482456 0.907895
36 BA3 0.481818 0.921053
37 NAJ PZO 0.478261 0.924051
38 ATP 0.477876 0.921053
39 B4P 0.477477 0.921053
40 ADP 0.477477 0.921053
41 AP5 0.477477 0.921053
42 OAD 0.47541 0.897436
43 5FA 0.473684 0.921053
44 AR6 0.473684 0.896104
45 APR 0.473684 0.896104
46 AQP 0.473684 0.921053
47 AN2 0.473214 0.909091
48 3OD 0.467742 0.897436
49 50T 0.464912 0.884615
50 PO4 PO4 A A A A PO4 0.463415 0.857143
51 V3L 0.461538 0.896104
52 2A5 0.46087 0.85
53 A1R 0.459016 0.841463
54 ADQ 0.459016 0.897436
55 4AD 0.459016 0.875
56 OVE 0.458716 0.8375
57 OMR 0.458647 0.813953
58 PPS 0.457627 0.811765
59 AD9 0.456897 0.897436
60 CA0 0.45614 0.897436
61 M33 0.45614 0.884615
62 ADJ 0.455882 0.879518
63 A3P 0.455357 0.894737
64 ACP 0.452174 0.897436
65 ENP 0.451613 0.85
66 UP5 0.451128 0.948052
67 SRP 0.45 0.8625
68 ANP 0.449153 0.897436
69 ACQ 0.449153 0.897436
70 PRX 0.448276 0.82716
71 5AL 0.445378 0.884615
72 7D4 0.443478 0.8375
73 ADX 0.443478 0.811765
74 AMP 0.436364 0.894737
75 A 0.436364 0.894737
76 4TC 0.433824 0.924051
77 7D3 0.433628 0.8375
78 ETB 0.433566 0.797753
79 DCA 0.433566 0.788889
80 1ZZ 0.433071 0.802326
81 BIS 0.433071 0.864198
82 00A 0.432 0.864198
83 ATF 0.429752 0.886076
84 0T1 0.427586 0.788889
85 5SV 0.427419 0.788235
86 8QN 0.427419 0.884615
87 3AM 0.427273 0.857143
88 N01 0.426573 0.884615
89 PR8 0.425197 0.811765
90 WAQ 0.425197 0.841463
91 LAD 0.425197 0.821429
92 DTP 0.425 0.8375
93 AMO 0.424 0.886076
94 PAJ 0.424 0.843373
95 APC 0.423729 0.886076
96 UPA 0.423358 0.935897
97 48N 0.422222 0.853659
98 FYA 0.421875 0.860759
99 PTJ 0.421875 0.853659
100 CNA 0.421429 0.910256
101 PUA 0.42069 0.9125
102 NXX 0.419118 0.910256
103 DND 0.419118 0.910256
104 AV2 0.418033 0.848101
105 COA 0.417808 0.788889
106 3UK 0.417323 0.897436
107 OOB 0.416 0.909091
108 IVC 0.415584 0.78022
109 DAT 0.415254 0.8375
110 NDO 0.414966 0.897436
111 139 0.414286 0.901235
112 3AT 0.413223 0.896104
113 TAT 0.413223 0.886076
114 YLB 0.413043 0.784091
115 62F 0.4125 0.823529
116 ABM 0.412281 0.848101
117 YAP 0.412214 0.875
118 YLP 0.411765 0.784091
119 ME8 0.410853 0.802326
120 NB8 0.410853 0.853659
121 SON 0.410256 0.886076
122 DLL 0.409449 0.909091
123 AHX 0.409449 0.853659
124 COS 0.409396 0.771739
125 AMX 0.409396 0.797753
126 CAO 0.409396 0.763441
127 30N 0.409396 0.72449
128 7D5 0.409091 0.8125
129 4UW 0.408759 0.9125
130 APX 0.407692 0.841463
131 SRA 0.40708 0.85
132 CMX 0.406667 0.788889
133 SCO 0.406667 0.788889
134 TYM 0.405797 0.886076
135 COD 0.405594 0.777778
136 OXK 0.405229 0.771739
137 CA6 0.405229 0.70297
138 A12 0.405172 0.886076
139 AP2 0.405172 0.886076
140 9SN 0.40458 0.853659
141 LAQ 0.404412 0.802326
142 T5A 0.404255 0.914634
143 FAM 0.403974 0.771739
144 ACO 0.403974 0.763441
145 FCX 0.403974 0.763441
146 AMP MG 0.403509 0.825
147 VO4 ADP 0.403226 0.860759
148 ADP VO4 0.403226 0.860759
149 YLC 0.402878 0.823529
150 1VU 0.402597 0.763441
151 FA5 0.401515 0.886076
152 HAX 0.401316 0.771739
153 APU 0.4 0.923077
154 TXA 0.4 0.886076
155 A U 0.4 0.898734
156 4UU 0.4 0.948052
157 AFH 0.4 0.843373
158 CAJ 0.4 0.771739
159 AR6 AR6 0.4 0.871795
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1rpn.bio5) has 36 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1rpn.bio5) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1rpn.bio5) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1rpn.bio5) has 36 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1rpn.bio5) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1rpn.bio5) has 36 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: 280
This union binding pocket(no: 7) in the query (biounit: 1rpn.bio5) has 37 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1XKQ NDP 0.0000006861 0.51329 1.42857
2 2GZ3 NAP 0.0004043 0.43978 1.49254
3 1PZG A3D 0.000554 0.42293 1.51057
4 5DOZ NDP 0.003174 0.40865 1.79104
5 2Q2V NAD 0.000001449 0.50253 1.96078
6 2JAH NDP 0.0000003287 0.51647 2.02429
7 2JAP NDP 0.0000003144 0.51633 2.02429
8 3CH6 NAP 0.000003372 0.52835 2.0979
9 3CH6 311 0.000003372 0.52835 2.0979
10 3WXB NDP 0.00000004725 0.54324 2.15054
11 5THQ NDP 0.00000008453 0.53153 2.20588
12 1LDN NAD 0.0003023 0.41638 2.21519
13 1TDF NAP 0.0104 0.40057 2.21519
14 1U7T TDT 0.0000003182 0.54409 2.29885
15 1E3W NAD 0.00000003374 0.54311 2.29885
16 1U7T NAD 0.0000000513 0.52619 2.29885
17 1E6W NAD 0.00000003723 0.59921 2.30769
18 1XSE NDP 0.0000003445 0.54128 2.37288
19 3ABI NAD 0.0003897 0.41101 2.38806
20 2EWM NAD 0.000001418 0.4958 2.40964
21 3NUG NAD 0.0000000379 0.54704 2.42915
22 1SOW NAD 0.0001742 0.42752 2.43902
23 1HDR NAD 0.0001365 0.45715 2.45902
24 4K26 NDP 0.0000005331 0.50809 2.53623
25 4K26 SFF 0.000003613 0.50328 2.53623
26 3VPH NAD 0.0004235 0.41759 2.58065
27 3VPH OXM 0.0008664 0.41206 2.58065
28 1VL8 NAP 0.0000001227 0.56417 2.62172
29 2DTX BMA 0.0000001779 0.54992 2.65152
30 5GT9 NAP 0.000002344 0.4875 2.6616
31 3G2O SAM 0.0115 0.41287 2.67559
32 2GN4 NDP 0.00000003279 0.63507 2.68657
33 2GN4 UD1 0.00000005022 0.62982 2.68657
34 2FR1 NDP 0.00000004948 0.54721 2.68657
35 5VN0 NAI 0.00553 0.40671 2.68657
36 1X1T NAD 0.000002035 0.4975 2.69231
37 2ZAT NAP 0.000003292 0.48104 2.69231
38 3RJ5 NAD 0.000001932 0.51144 2.75591
39 4FN4 NAD 0.0000003765 0.51063 2.75591
40 1UXG NAD 0.0009195 0.41632 2.91262
41 4J1Q NDP 0.00000001974 0.54024 2.98507
42 4FMS BDP 0.03263 0.41624 2.98507
43 5JAQ NAI 0.001697 0.40796 2.98507
44 1GV0 NAD 0.0004934 0.40754 2.98507
45 1M2W NAD 0.01205 0.40041 2.98507
46 3BAZ NAP 0.007891 0.40295 3.003
47 1V35 NAI 0.00005054 0.46497 3.03951
48 1LDM NAD 0.0005698 0.4049 3.03951
49 2HJR APR 0.00004522 0.41625 3.04878
50 4D42 W0I 0.00001189 0.49734 3.19149
51 4D42 NAP 0.00001189 0.49734 3.19149
52 3O26 NDP 0.0000001058 0.52821 3.21543
53 1GUZ NAD 0.0005318 0.40315 3.22581
54 3JUC PCA 0.01639 0.4236 3.26797
55 2EXX NAP 0.00008298 0.44526 3.28358
56 4OOE FOM 0.004394 0.41746 3.28358
57 4OOE NDP 0.004394 0.41746 3.28358
58 1I0Z NAI 0.0002266 0.41754 3.3033
59 1G8S MET 0.04946 0.40126 3.47826
60 1UWK URO 0.003113 0.40444 3.58209
61 1UWK NAD 0.003113 0.40444 3.58209
62 1SNY NAP 0.000002411 0.47263 3.74532
63 1GZ6 NAI 0.000004799 0.51348 3.76176
64 1H5Q NAP 0.0000002269 0.52119 3.77358
65 3U4C NDP 0.0002668 0.41468 3.91459
66 2DKN NAI 0.000000524 0.50092 3.92157
67 2WSB NAD 0.0000004893 0.53583 3.93701
68 2RH4 EMO 0.0000007711 0.53599 3.97112
69 1ZBQ NAD 0.00000241 0.4906 3.97554
70 4O0L NDP 0.0000001304 0.52924 4
71 2PD4 NAD 0.00002994 0.4637 4
72 2PD4 DCN 0.00003029 0.46352 4
73 2BD0 NAP 0.0000003871 0.51738 4.09836
74 4YAG NAI 0.00000514 0.50202 4.15225
75 1N5D NDP 0.0000003474 0.51512 4.16667
76 4J7U YTZ 0.00001316 0.48729 4.16667
77 4J7U NAP 0.00001316 0.48729 4.16667
78 4GKV NAD 0.001599 0.40023 4.1791
79 1Z6Z NAP 0.000004752 0.47189 4.25532
80 5CG1 NAD BBN 0.00004208 0.48669 4.2623
81 4HXY NDP 0.00000004294 0.54401 4.47761
82 1BDB NAD 0.000005019 0.50477 4.69314
83 1RM0 NAI 0.0004532 0.43499 4.77612
84 1RM0 D6P 0.001867 0.41529 4.77612
85 1HDG NAD 0.006898 0.40537 4.81928
86 1QG6 TCL 0.0000208 0.48137 4.98084
87 1QG6 NAD 0.0000208 0.48137 4.98084
88 1NNU TCT 0.0002045 0.47216 5
89 1NNU NAD 0.0001969 0.47216 5
90 4Q9N NAI 0.00002007 0.45904 5.03356
91 1GEE NAD 0.0000001119 0.52703 5.07463
92 4XQC NAD 0.001491 0.41416 5.07463
93 4XQC 13D 0.001843 0.4118 5.07463
94 4NBU NAI 0.00000006053 0.53954 5.2
95 3AY6 NAI 0.000000744 0.52452 5.20446
96 3AY6 BGC 0.000003066 0.51908 5.20446
97 3H4V DVP 0.000009065 0.49313 5.20833
98 3H4V NAP 0.00001883 0.48038 5.20833
99 1IY8 NAD 0.0000001565 0.52567 5.24345
100 2AG5 NAD 0.000006576 0.47092 5.28455
101 1W6U NAP 0.0000002186 0.49429 5.29801
102 1W8D NAP 0.0000002623 0.49227 5.29801
103 1W73 NAP 0.0000003151 0.49019 5.29801
104 1EDO NAP 0.0000002286 0.5257 5.32787
105 3V1U NAD 0.0000001224 0.50616 5.37313
106 1OAA OAA 0.00000354 0.50922 5.40541
107 3A28 NAD 0.0000001091 0.58117 5.42636
108 4NBW NAD 0.00000006688 0.52328 5.44747
109 2A92 NAI 0.0005016 0.41202 5.60748
110 3EB9 FLC 0.007738 0.43559 5.6391
111 3ZV6 NAD 0.000004681 0.50211 5.69395
112 3ZV6 4HB 0.00000511 0.50211 5.69395
113 4FC7 NAP 0.000001894 0.51766 5.77617
114 4FC7 COA 0.000001894 0.51766 5.77617
115 4NBT NAD 0.0000001688 0.51641 5.83333
116 1JA9 NDP 0.0000009597 0.50509 5.83942
117 4DPL NAP 0.000537 0.4047 5.84958
118 4PIV NDP 0.00000004701 0.54282 5.97015
119 2VZ0 D64 0.00004675 0.49527 5.97015
120 2VZ0 NAP 0.00004675 0.49527 5.97015
121 2WD7 NAP 0.000001714 0.48423 5.97015
122 1D7O NAD 0.00000846 0.48718 6.06061
123 3OJF IMJ 0.000007002 0.49583 6.22568
124 1FK8 NAD 0.0000006747 0.48571 6.22568
125 3OJF NDP 0.000007797 0.48404 6.22568
126 1XHL NDP 0.0000007079 0.50895 6.26866
127 5T9F TYR 0.001426 0.4084 6.27306
128 5T9F NAP 0.001849 0.40325 6.27306
129 5KKA 6V0 0.0008395 0.4042 6.41026
130 4KWI NAP 0.000001172 0.52224 6.46388
131 4KWI 1TJ 0.00000129 0.52224 6.46388
132 2WYV NAD 0.00001879 0.45686 6.51341
133 1MXH DHF 0.000006047 0.49384 6.52174
134 1MXH NAP 0.000007715 0.49008 6.52174
135 4U7W NDP 0.0000000002275 0.60124 6.56716
136 4PVD NDP 0.0000004729 0.49621 6.56716
137 3OIG NAD 0.000006769 0.46474 6.76692
138 5T2U NAP 0.0000003949 0.5217 6.85484
139 1XG5 NAP 0.000002393 0.48788 6.86567
140 5F5N NAD 0.000001837 0.47445 6.86567
141 1NFQ NAI 0.0000003055 0.52122 6.92308
142 5JCJ NAP 0.000001584 0.54089 6.94444
143 3JQF NAP 0.000001238 0.4935 6.94444
144 3BMQ NAP 0.000001394 0.49127 6.94444
145 5K6A NAP 0.000001657 0.48906 6.94444
146 5JDI NAP 0.000001247 0.48818 6.94444
147 4CM9 NAP 0.000001824 0.48757 6.94444
148 4CME NAP 0.000001405 0.48738 6.94444
149 4CLR NAP 0.000001497 0.48605 6.94444
150 4CLO NAP 0.000001097 0.4859 6.94444
151 5JDC NAP 0.000001597 0.48531 6.94444
152 3BMO NAP 0.000001696 0.48447 6.94444
153 3JQA NAP 0.000001292 0.48395 6.94444
154 3BMN NAP 0.000002345 0.4839 6.94444
155 4CM8 NAP 0.0000017 0.48355 6.94444
156 3JQ8 NAP 0.000002492 0.48345 6.94444
157 4CM4 NAP 0.000001934 0.48234 6.94444
158 4CMI NAP 0.000002146 0.48143 6.94444
159 3JQB NAP 0.000002006 0.47809 6.94444
160 3JQG NAP 0.000002041 0.47777 6.94444
161 3JQ9 NAP 0.000003816 0.47771 6.94444
162 3JQ7 NAP 0.000003448 0.46942 6.94444
163 4O1M NAD 0.000006702 0.47105 6.98413
164 5ITV NAI 0.0000002542 0.51994 7.05882
165 1T26 NAI 0.00095 0.42022 7.14286
166 2X6T NAP 0.000000003624 0.57105 7.16418
167 1EQ2 NAP 0.00000002936 0.54225 7.16418
168 2BGM NAJ 0.0000001307 0.51309 7.16418
169 5MSO NAP 0.000000000153 0.5997 7.46269
170 2PHW MAN MAN MAN BMA MAN MAN MAN 0.04408 0.40055 7.53968
171 2CFC NAD 0.00000005378 0.53321 7.6
172 5EPO NAP 0.0001192 0.42853 7.63359
173 9LDT NAD 0.0004312 0.41193 7.83133
174 9LDB NAD 0.000476 0.41062 7.83133
175 4OHU NAD 0.00002549 0.49025 8.0597
176 4OHU 2TK 0.00002549 0.49025 8.0597
177 1Y1P NMN AMP PO4 0.0000009324 0.47379 8.0597
178 4PLG NAI 0.0005501 0.42304 8.08383
179 3HB5 NAP 0.0000001674 0.48502 8.25688
180 4ZA2 NAD 0.0000004598 0.50225 8.3004
181 3SJ7 NDP 0.00000002669 0.54209 8.33333
182 1I2B NAD 0.0000002085 0.56731 8.35821
183 3O03 NAP 0.000000105 0.51251 8.35821
184 1I2B USQ 0.004803 0.43259 8.35821
185 1I2B UPG 0.004803 0.43259 8.35821
186 5MDH NAD 0.0003872 0.40204 8.35821
187 1GEG NAD 0.0000001796 0.51998 8.65672
188 4ITU 1HS 0.000001946 0.51724 8.65672
189 4ITU NAI 0.0000005305 0.51724 8.65672
190 4ZVV GN0 0.001386 0.42751 8.73494
191 4ZVV NAD 0.001386 0.42751 8.73494
192 1G0N NDP 0.0000002981 0.54027 8.83392
193 1G0N PHH 0.0000004151 0.53994 8.83392
194 5L4L NAP 0.000001289 0.46672 8.88158
195 5L4L 7OX 0.00009082 0.45071 8.88158
196 3MJE NDP 0.00000007768 0.53123 8.95522
197 2BKA NDP 0.0000003961 0.50297 9.09091
198 5JE8 NAD 0.003156 0.41943 9.27152
199 3OID NDP 0.0000003215 0.52477 9.30233
200 1A27 NAP 0.0000004461 0.50898 9.34256
201 1Q7B NAP 0.0000002088 0.51695 9.42623
202 1AE1 NAP 0.000002417 0.49305 9.52381
203 2V6G NAP 0.00001156 0.46605 9.55224
204 2C29 NAP 0.00000004512 0.57784 10.3858
205 2C29 DQH 0.0000001513 0.55881 10.3858
206 1BW9 NAD 0.008951 0.40876 10.4478
207 2JL1 NAP 0.000002574 0.44586 10.453
208 4CQM NAP 0.0000000298 0.54545 10.6557
209 1PR9 NAP 0.0000003734 0.52198 10.6557
210 3D3W NAP 0.0000005187 0.51687 10.6557
211 3TN7 NJP 0.000000565 0.50927 10.7463
212 3I6I NDP 0.0000573 0.45914 10.7463
213 1CER NAD 0.001774 0.4268 10.7463
214 4EUE NAI 0.0002059 0.42681 11.0448
215 1WMA AB3 0.000003324 0.51021 11.2319
216 1WMA NDP 0.000003324 0.51021 11.2319
217 5L4S 6KX 0.0000008508 0.52246 11.3208
218 5L4S NAP 0.0000008508 0.52246 11.3208
219 4R1S NAP 0.000000002093 0.56513 11.3433
220 1HDO NAP 0.00000008237 0.54837 11.3433
221 4OSP NAP 0.0000003175 0.50704 11.4068
222 1ZEM NAD 0.00000005728 0.51964 11.4504
223 4TQG NDP 0.00000001672 0.55136 11.4551
224 4M6G ALA ZGL 0.02868 0.42086 11.5556
225 5L53 NAP 0.0000001299 0.48975 11.7284
226 3ICC NAP 0.0000004881 0.5142 11.7647
227 4QED NAP 0.0000002408 0.51651 12.0968
228 3QWI NAP 0.000000569 0.51222 12.2222
229 3QWI CUE 0.000002504 0.51188 12.2222
230 1ZK4 NAP 0.000001656 0.51061 12.3506
231 1ZK4 AC0 0.03119 0.41017 12.3506
232 3RFV NAI 0.000000001675 0.57255 12.3596
233 3RFV 15L 0.000000225 0.49896 12.3596
234 3GEG NAD 0.000004769 0.46759 12.9555
235 2Q46 NAP 0.0000007902 0.49643 13.834
236 3ORF NAD 0.000009298 0.45998 13.9442
237 3GGO ENO 0.002691 0.40289 14.6269
238 3GGO NAI 0.002691 0.40289 14.6269
239 2AE2 PTO 0.000003492 0.50526 15.3846
240 2AE2 NAP 0.000003492 0.50526 15.3846
241 3SJU NDP 0.00000005461 0.5874 15.7706
242 2GDZ NAD 0.0000001941 0.5195 17.603
243 3VZS NAP 0.0000001193 0.56406 17.8988
244 3VZS CAA 0.0000007293 0.5567 17.8988
245 1E7S NAP 0.0000001085 0.5367 20.2985
246 1VL0 NAI 0.000000001014 0.56989 20.5479
247 2B4Q NAP 0.000005037 0.47405 22.8261
248 3A4V NAD 0.000000001573 0.61705 23.3438
249 3A4V PYR 0.000000001573 0.61705 23.3438
250 3WMX NAD 0.0000000263 0.53287 28.3582
251 3AFN NAP 0.00000199 0.4979 31.7829
252 1KEW TYD 0.00000004128 0.58821 34.6269
253 1KEW NAD 0.00000006513 0.58226 34.6269
254 1GY8 NAD 0.00000005835 0.54081 35.5224
255 1OC2 TDX 0.00000002117 0.60578 36.7164
256 1OC2 NAD 0.00000002117 0.60578 36.7164
257 2YY7 NAD 0.00000001939 0.55683 37.9104
258 1UDB NAD 0.00000002655 0.59671 38.209
259 2Q1W NAD 0.0000000495 0.54724 38.806
260 1WVG APR 0.0000000167 0.53099 38.806
261 2Q1S NAI 0.000002916 0.51228 38.806
262 4GLL NAD 0.000000005551 0.57837 39.1045
263 2C5A GDC 0.000000225 0.56485 39.1045
264 2C5A NAD 0.000000225 0.56485 39.1045
265 1R6D NAD 0.00000001154 0.61294 39.403
266 1R6D DAU 0.00000003791 0.59234 39.403
267 1BXK NAD 0.000000004573 0.56562 39.403
268 1SB8 UD2 0.000000007844 0.61778 40.2985
269 1SB8 NAD 0.00000001869 0.59799 40.2985
270 1ORR NAD 0.0000000005504 0.61758 40.8955
271 1EK6 UPG 0.0000002351 0.56658 41.194
272 1EK6 NAI 0.0000002682 0.562 41.194
273 2PZM NAD 0.0000002713 0.54962 41.5152
274 2PZM UDP 0.0000002713 0.54962 41.5152
275 1RKX NAD 0.000000001264 0.64959 41.791
276 1Z45 NAD 0.00000001668 0.55107 41.791
277 3LU1 NAD 0.0000000005185 0.60073 42.3881
278 3KO8 NAD 0.000000003623 0.58503 42.6282
279 4ZRN NAD 0.000000001615 0.60643 45.5128
280 4ZRN UPG 0.00000008378 0.57547 45.5128
Pocket No.: 8; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: 26
This union binding pocket(no: 8) in the query (biounit: 1rpn.bio5) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1H82 FAD 0.03866 0.40519 2.68657
2 1EQ2 ADQ 0.005849 0.41072 7.16418
3 2X6T ADP BMA 0.0088 0.40106 7.16418
4 2XK9 XK9 0.008393 0.42038 7.45342
5 1I2B NAD 0.0008587 0.48645 8.35821
6 1KEW NAD 0.00002914 0.55582 34.6269
7 1KEW TYD 0.00002824 0.55541 34.6269
8 1GY8 UDP 0.00004804 0.46988 35.5224
9 1OC2 TDX 0.0001004 0.53334 36.7164
10 1OC2 NAD 0.0001004 0.53334 36.7164
11 1UDB NAD 0.007277 0.43835 38.209
12 1WVG CXY 0.000001674 0.57063 38.806
13 2Q1S NAI 0.02523 0.40627 38.806
14 2C5A GDC 0.04092 0.40263 39.1045
15 2C5A NAD 0.04092 0.40263 39.1045
16 1R6D DAU 0.0001211 0.52649 39.403
17 1R6D NAD 0.0001267 0.52649 39.403
18 1SB8 UD2 0.0003102 0.50645 40.2985
19 1SB8 NAD 0.003732 0.45006 40.2985
20 1EK6 NAI 0.0001582 0.52175 41.194
21 1EK6 UPG 0.000847 0.48758 41.194
22 2PZM UDP 0.009966 0.42584 41.5152
23 2PZM NAD 0.009966 0.42584 41.5152
24 1Z45 UPG 0.002933 0.42021 41.791
25 3LU1 UD2 0.000114 0.49087 42.3881
26 4ZRN UPG 0.01523 0.42104 45.5128
Pocket No.: 9; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: 155
This union binding pocket(no: 9) in the query (biounit: 1rpn.bio2) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1E5Q NDP 0.0003078 0.4277 1.19403
2 3WQQ IB3 0.003258 0.40872 1.49254
3 3WQQ NDP 0.003258 0.40872 1.49254
4 5DN9 NAD 0.002396 0.40478 1.49254
5 3WBF API 0.001198 0.41591 1.63934
6 3WBF NAP 0.0007363 0.4124 1.63934
7 2VHW NAI 0.000432 0.43626 1.79104
8 2B4R NAD 0.000874 0.41647 1.79104
9 1H2B NAJ 0.001343 0.41407 1.79104
10 3CMC NAD 0.005072 0.4186 1.79641
11 1J0X NAD 0.003917 0.40759 1.80723
12 2HMT NAI 0.0004422 0.40175 2.08333
13 4W6Z 8ID 0.00187 0.41243 2.08955
14 1GR0 NAD 0.001911 0.40967 2.08955
15 2V3A FAD 0.002921 0.4074 2.08955
16 3LAD FAD 0.00476 0.40339 2.38806
17 3WLE NAD 0.00371 0.40128 2.38806
18 5BVA FAD 0.006159 0.40093 2.38806
19 5U8U FAD 0.01401 0.40001 2.38806
20 2QA1 FAD 0.0009988 0.4214 2.4
21 1HYH NAD 0.0003551 0.43096 2.589
22 1O6Z NAD 0.0004331 0.40601 2.64026
23 2F5Z FAD 0.003264 0.41064 2.68657
24 3JV7 NAD 0.001115 0.40934 2.68657
25 1ZMD FAD 0.004111 0.40678 2.68657
26 1TB4 PEJ 0.001332 0.40641 2.68657
27 3L4S 3PG 0.002284 0.40555 2.68657
28 3L4S NAD 0.002203 0.40484 2.68657
29 2Z3Y F2N 0.005179 0.40292 2.68657
30 1H82 FAD 0.00928 0.40194 2.68657
31 1H82 GZZ 0.01211 0.4007 2.68657
32 5UAV NDP 0.00325 0.40343 2.79503
33 5UAV TFB 0.00325 0.40343 2.79503
34 2JHF NAD 0.04561 0.40055 2.94118
35 3LZW NAP 0.008038 0.40585 3.01205
36 3LZW FAD 0.003334 0.40522 3.01205
37 5JWC FAD 0.0009529 0.42216 3.07102
38 4G74 UQ5 0.002961 0.41595 3.18725
39 4G74 FAD 0.001548 0.4155 3.18725
40 1UZN NAP 0.00007284 0.40387 3.23887
41 1LTH NAD 0.0001154 0.42667 3.28358
42 1Q0H FOM 0.001945 0.42122 3.28358
43 1Q0H NDP 0.002168 0.42122 3.28358
44 1LLU NAD 0.001279 0.41615 3.28358
45 5MZI FAD 0.006742 0.40961 3.28358
46 5MZI FYK 0.007012 0.40961 3.28358
47 2NU8 COA 0.003278 0.40862 3.28358
48 1ZK7 FAD 0.004232 0.40814 3.28358
49 3T31 DCQ 0.006892 0.40782 3.28358
50 1SC6 NAD 0.001933 0.40693 3.28358
51 3T31 FAD 0.007055 0.40595 3.28358
52 3B1J NAD 0.00145 0.40547 3.28358
53 1DSS NAD 0.0006295 0.40421 3.28358
54 1DLJ NAI 0.006847 0.40338 3.28358
55 1DLJ UGA 0.006952 0.40312 3.28358
56 2V6O FAD 0.01529 0.40247 3.28358
57 1B8U NAD 0.00004644 0.42232 3.34347
58 1B8U OAA 0.0008101 0.42083 3.34347
59 3RNM FAD 0.00575 0.40117 3.44828
60 4U8P UDP 0.0109 0.40684 3.58209
61 4U8P FDA 0.0102 0.40684 3.58209
62 3LST SAH 0.02765 0.40339 3.58209
63 4FWE FAD 0.005269 0.40263 3.58209
64 3AB1 FAD 0.004512 0.40232 3.58209
65 5JY6 NAD 0.00768 0.40142 3.58209
66 1E1M FAD 0.009252 0.40054 3.58209
67 1E1M NAP 0.009252 0.40054 3.58209
68 1HKU NAD 0.003378 0.40037 3.58209
69 2F1K NAP 0.0007053 0.40978 3.58423
70 2QZZ NAP 0.001941 0.41298 3.77358
71 2QZZ EMF 0.002078 0.41298 3.77358
72 3GFB NAD 0.002193 0.4153 3.8806
73 3L9W AMP 0.001923 0.40448 3.8806
74 2AQJ FAD 0.01104 0.401 3.8806
75 2AQJ TRP 0.01062 0.401 3.8806
76 1EZ4 NAD 0.0001052 0.43603 4.08805
77 1V59 FAD 0.002376 0.41785 4.1791
78 3G5S FAD 0.001557 0.41658 4.1791
79 3NJ4 NAD 0.02423 0.40881 4.1791
80 3NJ4 AFX 0.02459 0.40853 4.1791
81 2VVM FAD 0.0037 0.4056 4.1791
82 1VM6 NAD 0.0007156 0.40347 4.1791
83 1E6E FAD 0.003349 0.40295 4.1791
84 4DSG UDP 0.01127 0.40131 4.1791
85 4DSG FAD 0.01127 0.40131 4.1791
86 2ZJ1 ARJ 0.008422 0.40063 4.1791
87 2ZJ1 NAD 0.008721 0.40003 4.1791
88 3HAD NAD 0.00591 0.40507 4.22078
89 2Q7V FAD 0.005157 0.40109 4.30769
90 2VVL FAD 0.004658 0.40278 4.47761
91 1WP4 NDP 0.001148 0.40618 4.49827
92 3CIF NAD 0.0006379 0.41512 4.77612
93 4R5M 4NO 0.0009794 0.41498 4.77612
94 4R5M NAP 0.0006834 0.41477 4.77612
95 2BRY FAD 0.002866 0.4019 4.77612
96 5CAE COA 0.0004842 0.40453 4.81013
97 5CAE SIN 0.00266 0.4031 4.81013
98 1VKO NAD 0.001048 0.41671 5.07463
99 2XVE FAD 0.01107 0.40161 5.07463
100 5UAO FAD 0.004399 0.40067 5.07463
101 1HYE NAP 0.0001205 0.41978 5.11182
102 2CUL FAD 0.0009484 0.42224 5.17241
103 3SQP FAD 0.04267 0.40776 5.37313
104 1EBF NAD 0.0007529 0.4036 5.37313
105 4YCA NDP 0.0008635 0.40646 5.44218
106 2V3B FAD 0.002537 0.4086 5.45455
107 4E13 NAD 0.0002903 0.40175 5.65371
108 1MUU NAD 0.0004761 0.40997 5.67164
109 1U1I NAD 0.0008351 0.42302 5.97015
110 1MV8 NAD 0.0004677 0.41394 5.97015
111 2I3G NAP 0.001438 0.40875 5.97015
112 1C3V NDP 0.001863 0.4045 6.12245
113 4RSL FAD 0.002055 0.4109 6.26866
114 5T9E NAP 0.001003 0.40316 6.27306
115 2PV7 NAD 0.0009299 0.40912 6.37584
116 3O9Z NAD 0.001685 0.42363 6.41026
117 3O9Z AKG 0.002972 0.41316 6.41026
118 3V1Y NAD 0.0006657 0.40744 6.56716
119 1RYD NDP 0.003681 0.40252 6.56716
120 1H6C NDP 0.003957 0.40133 6.56716
121 2DT5 NAD 0.001116 0.40741 6.63507
122 4XB2 NDP 0.0002829 0.41181 6.86567
123 4XB2 HSE 0.001507 0.41091 6.86567
124 4J4H 1J1 0.006315 0.40226 6.94981
125 4J4H NAI 0.006315 0.40226 6.94981
126 2E5V FAD 0.004099 0.40683 7.16418
127 4YSX FAD 0.00425 0.40331 7.46269
128 1O5I NAD 0.0001486 0.41083 7.63052
129 3B1F NAD 0.0004775 0.40284 7.93103
130 2CVQ NDP 0.0001874 0.43331 7.95107
131 4GUS FAD 0.005776 0.40201 8.06452
132 4MDH NAD 0.00009418 0.43988 8.35821
133 1A5Z NAD 0.00009874 0.42123 8.35821
134 1J5P NAD 0.0004527 0.41702 8.69565
135 1NVM NAD 0.001198 0.41213 9.25373
136 1GET NAP 0.01345 0.40252 9.55224
137 3QV1 NAD 0.0007242 0.40461 9.7561
138 3A06 NDP 0.001894 0.40981 9.85075
139 3A06 FOM 0.002232 0.40955 9.85075
140 1JNR FAD 0.01476 0.40365 10
141 1C1X NAD 0.002392 0.41662 10.4478
142 2WPF FAD 0.02446 0.40204 10.4478
143 2WPF WPF 0.02702 0.40142 10.4478
144 2DC1 NAD 0.0006152 0.41161 10.5932
145 4JDR FAD 0.003049 0.40982 11.0448
146 1LSS NAD 0.00008201 0.41761 11.4286
147 3C1O NAP 0.0002566 0.41509 11.5265
148 3CTY FAD 0.004957 0.40457 11.9122
149 2VDV SAM 0.007256 0.42841 12.2388
150 5A04 NDP 0.007768 0.40502 12.8358
151 5A04 BGC 0.009465 0.40502 12.8358
152 2G5C NAD 0.001171 0.40988 14.0299
153 1UAY ADN 0.00000643 0.41687 14.4628
154 1D4D FAD 0.003882 0.40774 15.2239
155 1UDB UFG 0.001156 0.46549 38.209
Pocket No.: 10; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: 1
This union binding pocket(no: 10) in the query (biounit: 1rpn.bio2) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1ORR CDP 0.003574 0.40472 40.8955
Pocket No.: 11; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: 1
This union binding pocket(no: 11) in the query (biounit: 1rpn.bio3) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2GN4 UD1 0.02644 0.43661 2.68657
Pocket No.: 12; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: 7
This union binding pocket(no: 12) in the query (biounit: 1rpn.bio3) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1GTE FAD 0.004823 0.41615 2.98507
2 3B20 NAD 0.0007397 0.40157 3.28358
3 3UOY NAP 0.01218 0.4037 4.77612
4 3UOY FAD 0.01218 0.4037 4.77612
5 3QVP FAD 0.005917 0.40069 5.97015
6 4J36 FAD 0.003174 0.40026 6.26866
7 4KP7 NAP 0.007485 0.40023 9.25373
Pocket No.: 13; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: 1
This union binding pocket(no: 13) in the query (biounit: 1rpn.bio4) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 2O4C NAD 0.002375 0.40066 2.38806
Pocket No.: 14; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: 1
This union binding pocket(no: 14) in the query (biounit: 1rpn.bio4) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1H82 GZZ 0.03627 0.41202 2.68657
Pocket No.: 15; Query (leader) PDB : 1RPN; Ligand: GDP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 15) in the query (biounit: 1rpn.bio1) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 16; Query (leader) PDB : 1RPN; Ligand: NDP; Similar sites found: 4
This union binding pocket(no: 16) in the query (biounit: 1rpn.bio1) has 33 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5E4R NAP 0.001133 0.40804 3.28358
2 1H9A NAP 0.001345 0.41534 4.47761
3 2PHW MAN MAN 0.04882 0.40142 7.53968
4 5KMS NAD 0.008984 0.40391 8.95522
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