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Receptor
PDB id Resolution Class Description Source Keywords
1RJ9 1.9 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE HETERODIMER OF THE CONSERVED GTPASE DOMAINS SIGNAL RECOGNITION PARTICLE (FFH) AND ITS RECEPTOR (FTSY) THERMUS AQUATICUS SRP-GTPASE DOMAIN HETERODIMER NUCLEOTIDE TWINNING PROTEINCOMPLEX PROTEIN TRANSPORT
Ref.: SUBSTRATE TWINNING ACTIVATES THE SIGNAL RECOGNITION PARTICLE AND ITS RECEPTOR NATURE V. 427 215 2004
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GCP A:500;
B:600;
Valid;
Valid;
none;
none;
submit data
521.208 C11 H18 N5 O13 P3 c1nc2...
MG A:501;
B:601;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1RJ9 1.9 Å NON-ENZYME: SIGNAL_HORMONE STRUCTURE OF THE HETERODIMER OF THE CONSERVED GTPASE DOMAINS SIGNAL RECOGNITION PARTICLE (FFH) AND ITS RECEPTOR (FTSY) THERMUS AQUATICUS SRP-GTPASE DOMAIN HETERODIMER NUCLEOTIDE TWINNING PROTEINCOMPLEX PROTEIN TRANSPORT
Ref.: SUBSTRATE TWINNING ACTIVATES THE SIGNAL RECOGNITION PARTICLE AND ITS RECEPTOR NATURE V. 427 215 2004
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 1OKK - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
2 2J7P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2CNW - GDP ALF n/a n/a
4 1RJ9 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1OKK - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
2 2J7P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2CNW - GDP ALF n/a n/a
4 1RJ9 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
50% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 1OKK - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
2 2J7P - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
3 2CNW - GDP ALF n/a n/a
4 1RJ9 - GCP C11 H18 N5 O13 P3 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GCP; Similar ligands found: 142
No: Ligand ECFP6 Tc MDL keys Tc
1 GCP 1 1
2 GP3 0.8375 0.948718
3 GDP 0.82716 0.973684
4 GNH 0.817073 0.961039
5 GP2 0.804878 0.987013
6 GTP 0.797619 0.973684
7 G1R 0.788235 0.961039
8 9GM 0.77907 0.948718
9 GNP 0.77907 0.948718
10 GSP 0.77907 0.925
11 G 0.765432 0.960526
12 5GP 0.765432 0.960526
13 G2P 0.758621 0.987013
14 GMV 0.755814 0.948718
15 G2R 0.736264 0.961538
16 Y9Z 0.715789 0.903614
17 GAV 0.703297 0.936709
18 G3A 0.701031 0.948718
19 GKE 0.697917 0.936709
20 GDC 0.697917 0.936709
21 GDD 0.697917 0.936709
22 ALF 5GP 0.696629 0.86747
23 G5P 0.693878 0.948718
24 GPG 0.691489 0.936709
25 GFB 0.690722 0.936709
26 GTG 0.690722 0.91358
27 GDR 0.690722 0.936709
28 GDP AF3 0.688172 0.86747
29 YGP 0.6875 0.879518
30 6CK 0.683673 0.91358
31 JB2 0.67 0.936709
32 GKD 0.67 0.936709
33 GDX 0.663366 0.948718
34 GPD 0.663366 0.925926
35 ALF GDP 0.652632 0.86747
36 GDP ALF 0.652632 0.86747
37 JB3 0.632075 0.925
38 GMP 0.62963 0.857143
39 NGD 0.626168 0.936709
40 G3D 0.610526 0.960526
41 2MD 0.609091 0.870588
42 G G 0.607843 0.924051
43 G4P 0.597938 0.960526
44 U2G 0.59633 0.91358
45 FEG 0.59633 0.880952
46 GDP 7MG 0.596154 0.888889
47 MGD 0.59292 0.870588
48 CAG 0.59292 0.860465
49 ZGP 0.590909 0.870588
50 0O2 0.59 0.960526
51 CG2 0.585586 0.91358
52 MD1 0.57265 0.892857
53 PGD 0.57265 0.902439
54 3GP 0.566667 0.922078
55 TPG 0.563025 0.842697
56 DBG 0.563025 0.925
57 FE9 0.550847 0.760417
58 ACP 0.548387 0.922078
59 GH3 0.54 0.973684
60 GCP G 0.538462 0.922078
61 A G 0.534483 0.911392
62 2GP 0.532609 0.935065
63 G4M 0.53125 0.860465
64 U A G G 0.529915 0.911392
65 GPX 0.529412 0.922078
66 DGI 0.525773 0.924051
67 G A A A 0.521368 0.9
68 IDP 0.520833 0.947368
69 DGT 0.52 0.924051
70 AKW 0.513043 0.869048
71 P1G 0.510417 0.873418
72 G1G 0.504132 0.902439
73 G1R G1R 0.5 0.901235
74 R5I 0.5 0.922078
75 BGO 0.5 0.901235
76 R7I 0.5 0.922078
77 PGD O 0.496 0.831461
78 G U 0.495726 0.878049
79 ACQ 0.494949 0.922078
80 P2G 0.489583 0.860759
81 GGM 0.487395 0.879518
82 MGP 0.485149 0.936709
83 6G0 0.480392 0.936709
84 6YZ 0.480392 0.922078
85 DGP 0.479167 0.911392
86 DG 0.479167 0.911392
87 GPC 0.47541 0.858824
88 G C 0.475 0.878049
89 4TC 0.470085 0.876543
90 IMP 0.46875 0.934211
91 GTA 0.464912 0.91358
92 G2Q 0.453704 0.961538
93 A2D 0.452632 0.871795
94 G G G C 0.452381 0.890244
95 G7M 0.44898 0.924051
96 AT4 0.44898 0.8625
97 APC G U 0.448 0.8875
98 SGP 0.444444 0.807229
99 BA3 0.443299 0.871795
100 G G G RPC 0.439024 0.853659
101 B4P 0.438776 0.871795
102 AP5 0.438776 0.871795
103 ADP 0.438776 0.896104
104 A G C C 0.4375 0.888889
105 ANP 0.436893 0.873418
106 G C C C 0.435115 0.901235
107 AN2 0.434343 0.884615
108 M33 0.43 0.860759
109 A12 0.428571 0.910256
110 AP2 0.428571 0.910256
111 A G U 0.427536 0.86747
112 35G 0.427184 0.909091
113 C2E 0.427184 0.897436
114 PCG 0.427184 0.909091
115 HEJ 0.425743 0.896104
116 ATP 0.425743 0.896104
117 5GP 5GP 0.423077 0.860759
118 G U34 0.422764 0.86747
119 AR6 0.421569 0.871795
120 AQP 0.421569 0.896104
121 5FA 0.421569 0.896104
122 APR 0.421569 0.871795
123 AGS 0.417476 0.851852
124 AD9 0.417476 0.873418
125 SAP 0.417476 0.851852
126 UP5 0.416667 0.851852
127 CA0 0.415842 0.873418
128 ATF 0.415094 0.8625
129 HFD 0.413462 0.851852
130 A G U U 0.412587 0.86747
131 A1R 0.409091 0.841463
132 01G 0.408696 0.880952
133 PRT 0.408696 0.934211
134 APC 0.407767 0.910256
135 DG DG 0.40708 0.86747
136 A4P 0.406504 0.848837
137 UCG 0.406015 0.888889
138 7DD 0.405941 0.883117
139 93A 0.405941 0.813953
140 6AD 0.40566 0.821429
141 ADX 0.401961 0.790698
142 AGO 0.401575 0.86747
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1RJ9; Ligand: GCP; Similar sites found with APoc: 664
This union binding pocket(no: 1) in the query (biounit: 1rj9.bio1) has 55 residues
No: Leader PDB Ligand Sequence Similarity
1 5FII PHE None
2 4TMZ GSP 1.97368
3 5MZN ADP 2.30263
4 4LZB URA 2.52101
5 1Z6T ADP 2.63158
6 1W5T ANP 2.63158
7 1W5T ADP 2.63158
8 1BG2 ADP 2.66667
9 3ZFD ANP 2.66667
10 1G6O ADP 2.66667
11 6B4K ANP 2.96053
12 1P72 ADP 2.96053
13 1OYY AGS 3.05927
14 3H86 AP5 3.125
15 4JZ8 CIT 3.15457
16 3AB3 GDP 3.28947
17 1TQ4 GDP 3.28947
18 1ZCB GDP 3.28947
19 3LRE ADP 3.33333
20 4KBF AMP 3.33333
21 5VGR GDP 3.33333
22 5H4S RAM 3.52113
23 6AU6 GDP 3.61842
24 1XKV ATP 3.61842
25 5I34 GDP 3.61842
26 3KC1 2T6 3.61842
27 1RRC ADP 3.65448
28 3DC4 ADP 3.66667
29 4A4Z ANP 3.66667
30 4ZDJ UTP 3.66667
31 2AL2 PEP 3.66667
32 2AL2 2PG 3.66667
33 1EBG PAH 3.66667
34 1U0J ADP 3.74532
35 1VKJ A3P 3.85965
36 5YT0 GDP 3.94737
37 5FG3 GDP 3.94737
38 3WY9 GDP 3.94737
39 3WYA GDP 3.94737
40 4NCN GTP 3.94737
41 2CE7 ADP 3.94737
42 5ZBR ANP 3.94737
43 2QEN ADP 3.94737
44 1OS1 PYR 3.94737
45 1OS1 ATP 3.94737
46 4WEI GLC GAL 3.97112
47 2Y65 ADP 4
48 5KSZ GCP 4
49 1R6B ADP 4
50 4R43 GDP 4
51 1YTM ATP 4
52 2I4I AMP 4
53 2JCB ADP 4
54 4ZNL BEF ADP 4.0146
55 1DAK ADP 4.01786
56 1DAK DPU 4.01786
57 1D2N ANP 4.04412
58 4R98 GNH 4.05904
59 3PQC GDP 4.10256
60 4PX9 ADP 4.10959
61 1R2Q GNP 4.11765
62 1A4R GNH 4.18848
63 1A4R GDP 4.18848
64 4NE2 ADP 4.19162
65 4NE2 SH2 4.19162
66 1B0U ATP 4.19847
67 2J0W ASP 4.23163
68 1U3G ADP 4.2328
69 5U32 GDP 4.23729
70 1M7G AV2 4.2654
71 1M7G ADX 4.2654
72 1M7G ADP 4.2654
73 1P9B GDP 4.27632
74 2NCD ADP 4.27632
75 5ZXD ATP 4.27632
76 1H65 GDP 4.27632
77 1G8S MET 4.27632
78 4Q1A 2XZ 4.28571
79 4Q1A UDP 4.28571
80 1T5C ADP 4.33333
81 1FQK GDP 4.33333
82 1FQK ALF 4.33333
83 4GBM A3P 4.33333
84 4NTO 1PW 4.34783
85 2GMM MAN MAN 4.36508
86 4YDS ATP 4.38596
87 5UIV ADP 4.40529
88 3CX8 GSP 4.4335
89 5E5U MLI 4.52261
90 1SQ5 ADP 4.54545
91 3BOS CDP 4.54545
92 1AKY AP5 4.54545
93 2QZ4 ADP 4.58015
94 1KY3 GDP 4.60526
95 1Z06 GNP 4.60526
96 3RC3 ANP 4.60526
97 2ZX2 RAM 4.61538
98 4Z7X 3CX 4.62185
99 5BYK A3P 4.6332
100 5BYK OAQ 4.6332
101 2FSH ANP 4.66667
102 4PFO ADP 4.66667
103 1LK7 DER 4.80349
104 3BER AMP 4.81928
105 1VG8 GNP 4.83092
106 4WOP CTP 4.88889
107 2OBM ADP 4.93421
108 1VG0 GDP 4.93421
109 1XP8 AGS 4.93421
110 2ZPA ADP 4.93421
111 2AWN ADP 5
112 2ZFI ADP 5
113 2ZR9 DTP 5
114 1DNP MHF 5
115 4GOX A3P 5
116 3CV2 OXL 5
117 2OZE AGS 5.03356
118 4U5X GNP 5.05618
119 5WC2 ADP 5.09259
120 5GVR LMR 5.12821
121 3NKV GNP 5.14286
122 2WIC GNP 5.24345
123 1R0X ATP 5.24476
124 1TAD GDP 5.26316
125 1TAD ALF 5.26316
126 3DZD ADP 5.26316
127 4P4T GDP 5.26316
128 4ITR GDP 5.26316
129 5HR5 ADP 5.26316
130 3RLF ANP 5.26316
131 3BD9 A3P 5.26316
132 2BIF ANP 5.26316
133 2BIF SIN 5.26316
134 3Q85 GNP 5.32544
135 5IRN ADP 5.33333
136 5H68 AGS 5.33333
137 1KSH GDP 5.37634
138 3W5J GDP 5.39216
139 1VG1 GDP 5.40541
140 1VG9 GDP 5.40541
141 2HK9 ATR 5.45455
142 1RYH GNP 5.59211
143 4ZG4 VO4 ADP 5.59211
144 1Q19 SSC 5.59211
145 4YJ1 ADP 5.59211
146 1G7S GDP 5.59211
147 3E5H GNP 5.61798
148 3FIU POP 5.62249
149 4LYA ATP 5.66667
150 1IWE IMP 5.66667
151 4ZCW 4NG 5.66667
152 1NHX FTB 5.66667
153 1NHX PEP 5.66667
154 5J1S ATP 5.69106
155 1AQU A3P 5.72391
156 1XX6 ADP 5.75916
157 3MWL 8OX 5.7971
158 1JJV ATP 5.82524
159 2FFQ GSP 5.84795
160 3SBD GNP 5.88235
161 5M04 GDP 5.92105
162 5BN3 ADP 5.92105
163 1G41 ADP 5.92105
164 2C9O ADP 5.92105
165 4OHY ANP 5.92105
166 5M7P ADP 5.92105
167 3CPJ GDP 5.92105
168 2G50 ALA 5.92105
169 1BO4 COA 5.95238
170 1Y63 ADP 5.97826
171 2D7D ADP 6
172 5K5Z ANP 6
173 3T5G GDP 6.07735
174 1YZG GDP 6.14525
175 1CS4 GSP 6.22222
176 2BEK ATP 6.22568
177 4YMU ATP 6.25
178 2IS6 ADP 6.25
179 1DAR GDP 6.25
180 3R7F CP 6.25
181 2QG6 NMN 6.25
182 5KSP GDP 6.31579
183 2HT6 GDP 6.32184
184 4TL6 ANP 6.32411
185 3EWA ANP 6.33333
186 3VMF GTP 6.33333
187 1X6V ADP 6.33333
188 1ZD9 GDP 6.38298
189 4QOS ADP 6.41509
190 1ZJ6 G3D 6.41711
191 2W2X GSP 6.48649
192 2X7I CIT 6.49351
193 4V0K GDP 6.50888
194 5LTJ ADP 6.57895
195 2B8W ALF 5GP 6.57895
196 1IN4 ADP 6.57895
197 5LTJ BEF 6.57895
198 3QKT ANP 6.57895
199 2UXR ICT 6.57895
200 4HDQ GNP 6.58683
201 4HDO GNP 6.58683
202 2CHG ANP 6.63717
203 5EP2 AZU 6.64062
204 2IXE ATP 6.64207
205 4RD0 GDP 6.66667
206 4PJ3 ANP 6.66667
207 2YOH WMJ 6.66667
208 2CBZ ATP 6.75105
209 1S8F GDP 6.77966
210 4XGU ADP 6.83962
211 1GOT GDP 6.84932
212 4P3Y GDP 6.85279
213 3U6B GDP 6.85279
214 5JBQ GDP 6.85279
215 4G5G GDP 6.85279
216 3U6K GDP 6.85279
217 2BVN GNP 6.87023
218 1D8T GDP 6.87023
219 5HCN GCP 6.89655
220 1GOJ ADP 6.90789
221 1V8K ANP 6.90789
222 4Y4V DAL 6.90789
223 1SVK ALF GDP 6.90789
224 1NY5 ADP 6.90789
225 5Y6N ADP 6.90789
226 3Q9L ATP 6.92308
227 1UPT GTP 7.01754
228 1NF3 GNP 7.03125
229 5TIV A3P 7.11462
230 1FQJ ALF 7.14286
231 1FQJ GDP 7.14286
232 4HSE ADP 7.23684
233 2DPY ADP 7.23684
234 5IRR GSP 7.23684
235 2ZTS ADP 7.23684
236 2O0J ADP 7.23684
237 3QVV A3P 7.23684
238 5W7Q GDP 7.23861
239 3AB4 THR 7.30337
240 3BY9 SIN 7.30769
241 2GK6 ADP 7.33333
242 5KDO GDP 7.33333
243 2FNA ADP 7.33333
244 5FPE 3TR 7.33333
245 4TQK NAG 7.33333
246 4XTR ADP 7.34463
247 2WOJ ADP ALF 7.34463
248 4XTR ATP 7.34463
249 4XVU ATP 7.34463
250 2GWH A3P 7.38255
251 4BQS K2Q 7.38636
252 4BQS ADP 7.38636
253 1G6H ADP 7.393
254 4B47 GDP 7.43802
255 1D5C GDP 7.56579
256 5LB3 ADP 7.56579
257 4YC7 GNP 7.56579
258 2ZJ5 ADP 7.56579
259 4IOK XPO 7.56579
260 4IOK ADP 7.56579
261 3G5N PB2 7.56579
262 3EC1 GDP 7.58808
263 4QM7 GTP 7.60234
264 6FLZ MMA 7.63889
265 5N69 ADP 7.66667
266 2XAU ADP 7.66667
267 3REF GDP 7.73196
268 3P4X ADP 7.74818
269 3BFX A3P 7.77027
270 4RZ3 ADP 7.79661
271 1QF5 RPL 7.89474
272 1QF5 GDP 7.89474
273 4YS0 ADP 7.89474
274 1W7J ADP BEF 7.89474
275 4NU0 AP5 7.89474
276 1K6M AGS 7.89474
277 1D8C GLV 7.89474
278 5Z2M GTP 7.97101
279 1MKY GDP 8
280 5GOE GDP 8
281 5FTB ANP 8
282 5FHD ADP ALF 8
283 5VHC BEF ADP 8
284 2HCJ GDP 8.10811
285 3BFV ADP 8.11808
286 5O74 GDP 8.12183
287 4PC3 GDP 8.15603
288 1KK1 GNP 8.22368
289 4PPF FLC 8.22368
290 4KFU ACP 8.22368
291 3NHB ADP 8.22368
292 5TSH ADP 8.22368
293 5TSH ANP 8.22368
294 1QF9 ALF 8.24742
295 1QF9 C5P 8.24742
296 1QF9 ADP 8.24742
297 2VVG ADP 8.33333
298 3T34 GDP 8.33333
299 3IUY AMP 8.33333
300 2FAH GDP 8.33333
301 1OIV GDP 8.37696
302 4BAS GNP 8.54271
303 2X77 GDP 8.55263
304 6A20 ADP 8.55263
305 1F9V ADP 8.55263
306 4KVG GTP 8.55263
307 2G77 GDP 8.55263
308 2G77 AF3 8.55263
309 1VHT BA3 8.55263
310 2QN6 GDP 8.60215
311 1SKQ GDP 8.66667
312 4AG5 ADP 8.66667
313 5I0H ADP BEF 8.66667
314 3EZ2 ADP 8.66667
315 1SVM ATP 8.66667
316 2F5X ASP 8.66667
317 1GXU 2HP 8.79121
318 6G14 G4P 8.84354
319 3VX3 ADP 8.87097
320 6AIC AMP 8.8785
321 5JCZ GDP 8.93855
322 2EW1 GNP 8.95522
323 2C77 GNP 9
324 2C78 GNP 9
325 5W75 GDP 9
326 4IEE AGS 9
327 5XKT GNP 9
328 5W75 SUC 9
329 4LX0 BEF GDP 9.03955
330 2WJG GDP 9.04255
331 5XC5 GTP 9.09091
332 5Z69 AGS 9.13978
333 1JI0 ATP 9.16667
334 1YZN GNP 9.18919
335 2D2F ADP 9.2
336 5H7K GDP 9.21053
337 2RGX AP5 9.21053
338 2DX7 CIT 9.21053
339 4C4P GNP 9.24856
340 1NN5 2DT 9.30233
341 1NN5 ANP 9.30233
342 1D2E GDP 9.33333
343 2CJW GDP 9.375
344 3K7S R52 9.49721
345 2RIF AMP 9.53947
346 2VOH CIT 9.55414
347 2OFW ADX 9.61539
348 3Q72 GNP 9.63855
349 3GDN MXN 9.66667
350 4MKF AP5 9.67742
351 4KVA GTP 9.70874
352 4DKX GDP 9.72222
353 3O5N BR0 9.82143
354 2NGR AF3 9.82906
355 2NGR GDP 9.82906
356 5AK0 8V1 9.86842
357 1UJ2 C5P 9.86842
358 1UJ2 ADP 9.86842
359 2ODE ALF GDP 9.92908
360 2JLR ANP 10
361 1FP6 ADP 10.0346
362 4M9Q GNP 10.1322
363 4MKG AP5 10.1382
364 2RCN GDP 10.1974
365 1F6B GDP 10.1974
366 1YQT ADP 10.1974
367 5YV5 ADP 10.1974
368 4D81 ADP 10.1974
369 5X40 ACP 10.1974
370 5WRI A3P 10.1974
371 5WRJ A3P 10.1974
372 2WJH FLC 10.241
373 2WJH GDP 10.241
374 3RWO GDP 10.2703
375 1KO8 6PG 10.2857
376 3DOE GTP 10.303
377 2WHX ADP 10.3333
378 3WXM GTP 10.3333
379 1IZC PYR 10.3333
380 2J0V GDP 10.3774
381 5W76 GDP 10.3896
382 5UPK GNP 10.4167
383 1O8B ABF 10.5023
384 2WMO GTP 10.5263
385 3B7G ANP 10.5263
386 2XTZ GSP 10.5263
387 2FJU GSP 10.5263
388 5ZB0 TYD 10.5263
389 5ZB0 ADP 10.5263
390 3T1O GDP 10.6061
391 3T12 GDP ALF 10.6061
392 3WYF GTP 10.6667
393 3EF0 ALF 10.6667
394 2IL4 COA 10.6796
395 3CNL GNP 10.687
396 2BME GNP 10.7527
397 2EFE GNH 10.8553
398 2WKQ GTP 10.8553
399 3FVQ ATP 10.8553
400 4IDN GNP 10.8553
401 4DID GDP 10.8808
402 2PZE ATP 10.917
403 4ZI2 GNP 11.0526
404 4GOJ GNP 11.1111
405 5KUT GDP 11.1111
406 5MVR ADP 11.1111
407 6H5E ANP 11.1554
408 2PEZ DAT 11.1732
409 2PEZ GGZ 11.1732
410 4WZ6 ATP 11.1842
411 6IIL A8F 11.1842
412 1GRN GDP 11.33
413 1GRN AF3 11.33
414 2Q2Y ADP 11.3333
415 2Q2Y MKR 11.3333
416 5DI3 GNP 11.3514
417 4R2I ANP 11.4286
418 1NRJ GTP 11.4679
419 1F2U ATP 11.4865
420 2XTN GTP 11.5385
421 1LVG ADP 11.6162
422 3A1S GDP 11.6279
423 5BQ5 ADP BEF 11.6402
424 3FWY ADP 11.6667
425 6FAA ADP 11.6667
426 4V03 ADP 11.6732
427 4X8O AP5 11.6822
428 3GJ4 GDP 11.7647
429 3GJ8 GDP 11.7647
430 3GJ5 GDP 11.7647
431 3IO3 ADP 11.7816
432 5IFS ADP 11.8421
433 3WYG GTP 11.8421
434 3HU3 AGS 11.8421
435 1L2T ATP 11.9149
436 5G3Y ADP 11.9469
437 2ZEJ GDP 11.9565
438 4J0Q GDP 12
439 1IBR GNP 12.037
440 3GJX GTP 12.037
441 4HAT GNP 12.037
442 5G41 AP5 12.1076
443 5LEF GTP 12.1212
444 5UQW GDP 12.1693
445 2A5F GTP 12.1711
446 3KJI ADP 12.1711
447 3TD3 GLY 12.1951
448 3GJ3 GDP 12.2172
449 3GJ0 GDP 12.2172
450 2Y8E GNP 12.2905
451 3A4M ADP 12.3077
452 1GUA GNP 12.3457
453 1YZQ GNP 12.3529
454 2CDN ADP 12.4378
455 1ZIN AP5 12.4424
456 1S3G AP5 12.4424
457 3H4S ADP 12.5
458 4FRZ ADP 12.5
459 3TBK ANP 12.5
460 3FB4 AP5 12.5
461 3TMK T5A 12.5
462 2CK3 ANP 12.8289
463 1W0J ADP 12.8289
464 2V7Q ADP 12.8289
465 4NON GDP 12.8289
466 1W0J ADP BEF 12.8289
467 2CK3 ADP 12.8289
468 2V7Q ATP 12.8289
469 3FKQ ATP 12.8686
470 3SFV GDP 13
471 2VB6 ADP BEF 13
472 1JJ7 ADP 13.0769
473 1OFH ADP 13.1579
474 1Z83 AP5 13.2653
475 2GKS ADP 13.3333
476 1SVI GDP 13.3333
477 2O66 FLC 13.3333
478 5EXT ADP 13.4615
479 5O2T GSP 13.6095
480 6B8B ADP 13.6546
481 1QHG ATP 13.6667
482 2J5V PCA 13.6667
483 5J1J ANP 13.6842
484 5E95 GDP 13.6905
485 5OEC GDP 13.7056
486 3X1Z GNP 13.7725
487 4QRH 0O2 13.8095
488 1G7C 5GP 13.8298
489 5WLB GNP 13.8554
490 2UZI GTP 13.8554
491 3DDC GNP 13.8554
492 3KUD GDP 13.8554
493 1WQ1 AF3 13.8554
494 1WQ1 GDP 13.8554
495 1CLU DBG 13.8554
496 5UWH GNP 13.9241
497 6CIT GNP 13.9241
498 5DIF GNP 13.9241
499 5DHF GNP 13.9241
500 5UWT GNP 13.9241
501 5UWI GNP 13.9241
502 5UWJ GNP 13.9241
503 5UWO GNP 13.9241
504 5UWP GNP 13.9241
505 5UWQ GNP 13.9241
506 5DI9 GNP 13.9241
507 5UWU GNP 13.9241
508 5UWS GNP 13.9241
509 1OXV ANP 14
510 3FYH ADP 14
511 5TQZ GLC 14
512 1XMV ADP 14.1447
513 3RAB GNP 14.2012
514 5UWW GNP 14.2857
515 5JCP GDP ALF 14.3333
516 4YLG GDP 14.4509
517 3AQ4 GDP 14.6739
518 5SZH GNP 14.7783
519 3TK1 GDP 14.8026
520 4JLV ADP 14.8699
521 2KIN ADP 15
522 4H1V GNP 15
523 1IHU AF3 15.1316
524 1IHU ADP 15.1316
525 2P0D I3P 15.1316
526 3TKL GTP 15.3061
527 6DEF GCP 15.3333
528 1WA5 GTP 15.3409
529 2Z5F A3P 15.4362
530 3DKP ADP 15.4605
531 4LJ9 ACP 15.4605
532 4E03 ADP 15.534
533 6FA4 GNP 15.6069
534 1YRB GDP 15.6489
535 4DCT GDP 15.6667
536 5H7J GCP 15.6667
537 2GDJ ANP 15.9091
538 4CVN ADP 16.0584
539 2F9L GDP 16.0804
540 1VBO MAN MAN MAN 16.1074
541 4IHQ ADP 16.1184
542 4FCW ADP 16.1184
543 2A5J GDP 16.2304
544 2GJ8 ALF GDP 16.2791
545 3GJ7 GDP 16.3265
546 2HF9 GSP 16.3717
547 1TU3 GNP 16.4557
548 1HTW ADP 16.4557
549 3KTA AP5 16.4835
550 1XEX ATP 16.4835
551 3UIE ANP 16.5
552 4LPS GDP 16.5289
553 1B7T ADP 16.6667
554 1NST A3P 16.6667
555 3DEF GDP 16.7763
556 3B5J 12D 16.7763
557 1KK8 BEF ADP 16.8831
558 5WDR GNP 16.9591
559 1NVV GNP 17
560 6BVI GNP 17
561 6D59 GNP 17
562 6BVL GNP 17
563 6D56 GNP 17
564 6D5J GNP 17
565 6BVM GNP 17
566 6D5L GNP 17
567 6D5H GNP 17
568 6D55 GNP 17
569 6D5M GNP 17
570 6D5V GNP 17
571 6D5E GNP 17
572 6BVK GNP 17
573 6BVJ GNP 17
574 6D5G GNP 17
575 4WZA ACP 17
576 4WZA ADP 17
577 1KMQ GNP 17.3913
578 2J59 GTP 17.4699
579 1O3Y GTP 17.4699
580 5H67 ATP 17.5
581 1RE0 GDP 17.6829
582 1S9D GDP 17.6829
583 4KAX GTP 17.7515
584 4XOI GTP 17.7778
585 1Z0A GDP 17.8161
586 2W58 ADP 17.8218
587 3QF7 ANP 18
588 1YVD GNP 18.0921
589 5BXQ GDP 18.1102
590 4TTQ ATP 18.1395
591 2W83 GTP 18.1818
592 1GP2 GDP 18.3099
593 6CRK GDP 18.3099
594 3N5C GDP 18.5185
595 1NJF ADP 18.75
596 1NJF AGS 18.75
597 1LVK MNT BEF 18.75
598 1WF3 GNP 19
599 3PCR GTP 19.1358
600 6C90 ADP 19.2308
601 2GCO GNP 19.403
602 2GCN GDP 19.403
603 3IIJ ADP 19.4444
604 4ZKD GDP 19.7368
605 5EE5 GTP 19.883
606 3ZQ6 ADP ALF 20.0617
607 1Z0K GTP 20.2899
608 2PL3 ADP 20.339
609 1APZ ASP 20.9877
610 1R4A GNP 21.2121
611 4U00 ADP 21.3115
612 2C5L GTP 21.3873
613 1CR1 TTP 21.6216
614 5OCG GNP 21.6931
615 5TB5 GDP 22.1622
616 5TAR GDP 22.1622
617 1OW3 GDP 22.2798
618 3QXC ATP 22.314
619 1WDT GTP 22.3684
620 2XT3 ADP 23
621 5IRC GDP 23.1183
622 4D0G GTP 23.1884
623 4D0N GDP 23.2432
624 6BCA GSP 23.2432
625 6BCB GSP 23.2432
626 3LXR GDP 23.2432
627 5HPY GDP 23.2432
628 6BC0 GSP 23.2432
629 1EK0 GNP 23.5294
630 2A9K GDP 23.5294
631 1CXZ GSP 23.6264
632 4LC1 GDP 23.6842
633 2HV8 GTP 23.6842
634 1OIX GDP 23.6842
635 3ZS9 ADP ALF 23.6842
636 2QTV GNP 23.9521
637 4OI4 ATP 24
638 2D7C GTP 24.0132
639 4XSH GSP 24.0223
640 1M2O GNP 24.2105
641 1TX4 ALF GDP 24.2938
642 5XDR ADP 24.3333
643 1J2J GTP 24.4444
644 1QHH ATP 24.5509
645 1Z0F GDP 24.581
646 4HI0 GDP 24.6231
647 3MD0 GDP 25
648 1UAD GNP 25.1429
649 3COB ADP 25.3289
650 3MJH GTP 26.7857
651 1ZUI SKM 26.7857
652 1Z08 GNP 27.0588
653 3QBT GNP 27.5862
654 3TNF GNP 27.5862
655 4LHW GNP 27.5862
656 3BC1 GNP 28.8136
657 1LFD GNP 32.1839
658 1Z2A GDP 33.3333
659 1Z0J GTP 33.8983
660 2BCG GDP 35.9223
661 3ZIA ATP 36.5079
662 3ZIA ADP 36.5079
663 5UWR GNP 37.037
664 2OM2 GDP 41.6667
Pocket No.: 2; Query (leader) PDB : 1RJ9; Ligand: GCP; Similar sites found with APoc: 60
This union binding pocket(no: 2) in the query (biounit: 1rj9.bio1) has 69 residues
No: Leader PDB Ligand Sequence Similarity
1 3K6V CIT 2.63158
2 5EOU ATP 3
3 1KA1 A3P 3.33333
4 4LO2 GAL BGC 3.37838
5 3ITJ CIT 3.61842
6 3ZOK GLY 3.66667
7 2VSU ACO 3.98551
8 5C9P FUC 4
9 1Q8S MAN MMA 4.36508
10 2PHX MAN MAN 4.36508
11 5NM7 GLY 4.51128
12 1GQY ACP 4.60526
13 3ZX4 2M8 4.6332
14 1XXR MAN 4.96894
15 1D6Z HY1 5
16 1JQN DCO 5
17 5GJO PLP 5
18 2ORV 4TA 5.55556
19 2GMV UN8 5.66667
20 1UPF URF 5.80357
21 5JBE MAL 5.92105
22 2PTZ PAH 5.92105
23 4R8L ASP 6.25
24 2I4O ATP 6.33333
25 2JAQ DCP 6.34146
26 3IWK NAD 6.57895
27 5M3E APR 6.66667
28 2XWL CTP 6.72646
29 5A65 TPP 6.91244
30 4AF0 MOA 7.56579
31 4RZB NFQ 7.56579
32 1CZA G6P 7.56579
33 3EEB IHP 7.6555
34 2HIM ASN 7.89474
35 2ZE7 AMP 7.90514
36 2ZE7 DST 7.90514
37 2JFN UMA 8.07018
38 4AVB CMP 8.33333
39 1U4J MAN 8.47458
40 4BJ8 BTN 8.73016
41 1VL1 CIT 9.48276
42 4A7W GTP 9.53947
43 1XT8 CYS 9.58904
44 1QH9 LAC 9.91379
45 5TCI MLI 10
46 3AI8 HNQ 10.1562
47 3KN5 ANP 10.1974
48 6APL C5P 10.1974
49 2VWT PYR 10.8614
50 3MGB PAP 11.2853
51 5DNC ASN 11.3333
52 2E2P ADP 11.3712
53 2CUN 3PG 11.6667
54 3QDK QDK 11.8421
55 4NEC SAH 12.1212
56 1B7A OPE 14.5161
57 4LFL TG6 14.8148
58 1VBO MAN 16.1074
59 4JLS 3ZE 16.4474
60 4A62 ANP 18
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