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Receptor
PDB id Resolution Class Description Source Keywords
1OFD 2 Å EC: 1.4.7.1 GLUTAMATE SYNTHASE FROM SYNECHOCYSTIS SP IN COMPLEX WITH 2-OXOGLUTARATE AT 2.0 ANGSTROM RESOLUTION SYNECHOCYSTIS SP. OXIDOREDUCTASE COMPLEX ENZYME SUBSTRATE CHANNELING AMIDOTRANSFERASE FLAVOPROTEIN IRON-SULPHUR FD-GOGAT
Ref.: THE ACTIVE CONFORMATION OF GLUTAMATE SYNTHASE AND I BINDING TO FERREDOXIN J.MOL.BIOL. V. 330 113 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
AKG A:3510;
B:3510;
Valid;
Valid;
none;
none;
submit data
146.098 C5 H6 O5 C(CC(...
F3S A:3509;
B:3509;
Part of Protein;
Part of Protein;
none;
none;
submit data
295.795 Fe3 S4 S1[Fe...
FMN A:3508;
B:3508;
Valid;
Valid;
none;
none;
submit data
456.344 C17 H21 N4 O9 P Cc1cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1OFD 2 Å EC: 1.4.7.1 GLUTAMATE SYNTHASE FROM SYNECHOCYSTIS SP IN COMPLEX WITH 2-OXOGLUTARATE AT 2.0 ANGSTROM RESOLUTION SYNECHOCYSTIS SP. OXIDOREDUCTASE COMPLEX ENZYME SUBSTRATE CHANNELING AMIDOTRANSFERASE FLAVOPROTEIN IRON-SULPHUR FD-GOGAT
Ref.: THE ACTIVE CONFORMATION OF GLUTAMATE SYNTHASE AND I BINDING TO FERREDOXIN J.MOL.BIOL. V. 330 113 2003
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 1OFD - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
2 1OFE - FMN C17 H21 N4 O9 P Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: AKG; Similar ligands found: 7
No: Ligand ECFP6 Tc MDL keys Tc
1 AKG 1 1
2 SIN 0.526316 0.833333
3 OOG 0.5 0.947368
4 69O 0.458333 0.714286
5 2IT 0.423077 0.615385
6 SHF 0.416667 0.666667
7 3PY 0.409091 0.652174
Ligand no: 2; Ligand: FMN; Similar ligands found: 15
No: Ligand ECFP6 Tc MDL keys Tc
1 FMN 1 1
2 RBF 0.75641 0.876712
3 RS3 0.571429 0.831169
4 FAD 0.543307 0.876543
5 FAS 0.543307 0.876543
6 FAE 0.539062 0.865854
7 LFN 0.475 0.643836
8 C3F 0.473684 0.74359
9 CF4 0.463918 0.734177
10 FAY 0.446043 0.864198
11 FNR 0.444444 0.909091
12 RFL 0.442857 0.845238
13 4LS 0.411215 0.875
14 1VY 0.406593 0.769231
15 DLZ 0.404494 0.782051
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1OFD; Ligand: AKG; Similar sites found with APoc: 272
This union binding pocket(no: 1) in the query (biounit: 1ofd.bio2) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 4DG8 AMP 1.45161
2 3VEH 0GA 1.55211
3 4TMC HBA 1.73697
4 4TMC FMN 1.73697
5 5T96 79J 1.75439
6 3FSY SCA 2.10843
7 5OCS FMN 2.15633
8 5OE4 3UK 2.2113
9 3MJY IJZ 2.31214
10 3MJY FMN 2.31214
11 3ATY FMN 2.37467
12 1EC9 XYH 2.46637
13 6HKE LMR 2.51572
14 6HKE MLT 2.51572
15 2R14 FMN 2.65252
16 2R14 TXD 2.65252
17 4JIQ 1L5 2.65252
18 4JIQ FMN 2.65252
19 4JBL MET 2.65487
20 3ICS ADP 2.72109
21 3ICT ADP 2.72109
22 1OYB HBA 2.75
23 1OYB FMN 2.75
24 1UAS GLA 2.76243
25 5XLA SIA 2.7833
26 1KGZ PRP 2.89855
27 5A1S FLC 2.90179
28 1PS9 FMN 2.98063
29 1OX5 1PR 3.06306
30 1XC6 GAL 3.0896
31 4D86 ADP 3.13253
32 4YMZ 13P 3.18725
33 3P9T TCL 3.19635
34 2Q3R FMN 3.22581
35 2YPI PGA 3.23887
36 3UWB BB2 3.24675
37 1IND EOT 3.25581
38 6BFG FMN 3.25815
39 1VYP FMN 3.2967
40 1VYP TNF 3.2967
41 5NFB 8VT 3.40909
42 3W9Z FMN 3.41615
43 4WA2 SIA GAL NAG 3.42742
44 1ICP FMN 3.45745
45 2HSA FMN 3.48259
46 5GVH FMN 3.50318
47 1Z44 FMN 3.5503
48 1Z48 FMN 3.5503
49 1Z41 FMN 3.5503
50 1Z42 FMN 3.5503
51 4NAE 1GP 3.55556
52 3LL5 IP8 3.61446
53 4OOP DUP 3.61446
54 4BWL MN9 3.61842
55 2WPB ZZI 3.61842
56 1P4C FMN 3.68421
57 4M5P FMN 3.6855
58 6BKA FMN 3.74332
59 3KRU FMN 3.79009
60 2ZRU FMN 3.80435
61 6DVH FMN 3.80711
62 1TL2 NDG 3.81356
63 2Q3O FMN 3.83632
64 1DJN FMN 3.84088
65 2F6U CIT 3.84615
66 2RDT FMN 3.87597
67 2RDT 2RD 3.87597
68 4A3U FMN 3.91061
69 3PA8 621 3.93701
70 4EWN 0VR 3.95257
71 1GTE FMN 4
72 1GTE IUR 4
73 5Y5Q DUT 4.02299
74 6BVE PGA 4.08163
75 5AHN IMP 4.08998
76 2Y88 2ER 4.09836
77 4H6B 10Y 4.10256
78 5W6Y TRP 4.11392
79 1T9D PYD 4.13589
80 1I7E IBS 4.15094
81 1TDU DUR 4.15094
82 4IXH IMP 4.15512
83 1Q6O LG6 4.16667
84 2F5X ASP 4.16667
85 1AL8 FMN 4.17827
86 1AL8 DHP 4.17827
87 4ZNO SUC 4.1791
88 5AHM IMP 4.25
89 5LPG 71V 4.26829
90 3B0P FMN 4.28571
91 4AF0 IMP 4.31655
92 1KKR 2AS 4.35835
93 1ZGS XMM 4.47427
94 4Q4K FMN 4.48179
95 1CT9 AMP 4.5208
96 3EXS 5RP 4.52489
97 6AYU F6P 4.61095
98 1HSL HIS 4.62185
99 5A5W GUO 4.74308
100 1YKJ PHB 4.82234
101 1EP2 ORO 4.82315
102 1EP2 FMN 4.82315
103 3A23 GAL 4.88599
104 4WZH FMN 4.89914
105 4QNW FMN 5.10204
106 1WS1 BB2 5.12821
107 2AOU CQA 5.13699
108 1SJD NPG 5.16304
109 3C56 PH4 5.21173
110 3N9R TD3 5.21173
111 3OIX FMN 5.21739
112 6BSW UDP 5.32544
113 5TQZ GLC 5.33333
114 1YRB GDP 5.34351
115 6CZI 38E 5.35714
116 1VBO MAN 5.36913
117 1VBO MAN MAN MAN 5.36913
118 2NLI LAC 5.43478
119 2NLI FMN 5.43478
120 2FLI DX5 5.45455
121 1MID LAP 5.49451
122 1MFA GLA MMA ABE 5.51181
123 4D00 SIA GAL NAG 5.52147
124 2BTM PGA 5.55556
125 2FJK 13P 5.57377
126 1QDS PGA 5.57769
127 1XXR MAN 5.59006
128 1GVF PGH 5.59441
129 3TAO PGH 5.61798
130 5YRF GLC GLC 5.6338
131 5YRG BGC GLC 5.6338
132 1ISI NCA 5.66038
133 5XFV FMN 5.68862
134 2UXR ICT 5.72139
135 2GOU FMN 5.75342
136 5LXB 7A9 5.78512
137 4OHB 5HM 5.78947
138 3L6C MLI 5.8997
139 3VKC FPQ 5.94406
140 2GN3 MAN 5.95238
141 2GND MAN 5.95238
142 2GN3 MMA 5.95238
143 2GND MAN MMA 5.95238
144 2PHF MAN MAN 5.95238
145 1TRD PGH 6
146 2XYA 7L4 6.04396
147 2UZH IPE 6.06061
148 5N53 8NB 6.15385
149 3AXK NDP 6.20155
150 1XKV ATP 6.23819
151 1TB3 FMN 6.25
152 2OFW ADX 6.25
153 2Z6J FMN 6.3253
154 2Z6I FMN 6.3253
155 5EYW PGA 6.4257
156 1TV5 FMN 6.54628
157 4A59 AMP 6.54664
158 2NU5 NAG 6.55738
159 2GUC MAN 6.55738
160 2GUD MAN 6.55738
161 2HYR BGC GLC 6.55738
162 2GUD BMA 6.55738
163 2NUO BGC 6.55738
164 2HYQ MAN MAN 6.55738
165 4BI7 PGA 6.61479
166 1KBI FMN 6.65362
167 1KBI PYR 6.65362
168 1S17 GNR 6.66667
169 2GJN NIS 6.70732
170 2GJN FMN 6.70732
171 1W55 GPP 6.73854
172 3TW1 AHN 6.75105
173 5TCI MLI 6.82927
174 4POS NAG SIA GAL 6.83453
175 1F76 FMN 6.84524
176 1RL4 BRR 6.91489
177 1VHN FMN 6.91824
178 2JGV ADP 6.9697
179 3K0T BGC 6.99301
180 3UYW TAU 7.00935
181 5VM0 9EG 7.03125
182 5YRJ BGC GLC 7.04225
183 5YRI GLC GLC 7.04225
184 5YRL GLC GLC 7.04225
185 5A67 3PO 7.07547
186 4ORM 2V6 7.23192
187 4ORM ORO 7.23192
188 4ORM FMN 7.23192
189 2H8Z FMN 7.24234
190 2H8Z 8CM 7.24234
191 1NW4 IMH 7.24638
192 2PEZ DAT 7.26257
193 2OEM 1AE 7.26392
194 1C3M MAN MAN 7.48299
195 1OVD ORO 7.71704
196 1OVD FMN 7.71704
197 1UJP CIT 7.74908
198 4IGH FMN 7.7957
199 4IGH ORO 7.7957
200 4IGH 1EA 7.7957
201 3OI7 OI7 7.87671
202 2C6Q IMP 7.97721
203 5N49 8LW 8.14815
204 1KBJ FMN 8.25243
205 5T0B SIA GAL NAG 8.33333
206 3C3N FMN 8.65385
207 4I9A NCN 8.68056
208 5L3S G 8.72483
209 2FVV IHP 8.76289
210 1GXU 2HP 8.79121
211 1R4W GSH 8.84956
212 1LYX PGA 8.87097
213 1H5R THM 8.87372
214 5F1H 5U6 8.94309
215 4FOU C2E 9.09091
216 4I7E PEP 9.09091
217 4Y24 TD2 9.09091
218 5C9P FUC 9.18635
219 3KIH GDL 9.27835
220 1IXE CIT 9.28382
221 3HF3 FMN 9.45559
222 3LRE ADP 9.57747
223 1CZA G6P 9.59651
224 1LVW TYD 10.1695
225 4CW5 FMN 10.3524
226 4GDX GLU 10.4278
227 1UUO FMN 10.4839
228 1UUO ORO 10.4839
229 1UUO BRF 10.4839
230 1H5S TMP 10.5802
231 5CSS G3P 10.6195
232 3BW2 FMN 10.8401
233 4UTU LRY 10.917
234 4UTW RFW 10.917
235 3I6B KDO 11.1111
236 4Z0G 5GP 11.138
237 4NS0 PIO 11.2782
238 3KIF GDL 11.3208
239 1OSS BEN 11.6592
240 4MDB RLT 12
241 4BH1 SIA GAL NAG 12.0482
242 1T3D CYS 13.1488
243 3OVR 5SP 13.1579
244 3F4F UMP 13.1737
245 4XP7 FNR 13.2948
246 3UBQ SIA GAL 13.5593
247 4M44 SIA GAL NAG GAL 13.5838
248 1SW0 PGA 13.7097
249 1M5W DXP 13.9918
250 1UGW GAL 14.2857
251 1UGY GLA BGC 14.2857
252 1M26 GAL A2G 14.2857
253 1KUJ MMA 14.2857
254 1JAC AMG 14.2857
255 1UGY GLA GLC 14.2857
256 1WS4 GYP 14.2857
257 1WS4 AMG 14.2857
258 1WS5 MMA 14.2857
259 4N02 FNR 14.5658
260 3P48 DUP 14.966
261 1TOQ AMG 15.0376
262 3E3U NVC 15.2284
263 5XL4 SIA 15.3409
264 1LOB MMA 15.4696
265 1RVX SIA GAL NAG 15.625
266 1LES GLC FRU 17.1271
267 4DR9 BB2 18.2292
268 3QH2 3NM 19.0045
269 5FII PHE 27.451
270 4JEJ 1GP 34.0164
271 1MT1 AG2 34.6154
272 1JOT GAL A2G 40
Pocket No.: 2; Query (leader) PDB : 1OFD; Ligand: FMN; Similar sites found with APoc: 292
This union binding pocket(no: 2) in the query (biounit: 1ofd.bio2) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 5MSD AMP 1.6184
2 4TMC HBA 1.73697
3 4TMC FMN 1.73697
4 5T96 79J 1.75439
5 3FSY SCA 2.10843
6 5OCS FMN 2.15633
7 5OE4 3UK 2.2113
8 3MJY IJZ 2.31214
9 3MJY FMN 2.31214
10 1DE6 RNS 2.34742
11 3ATY FMN 2.37467
12 6HKE LMR 2.51572
13 1ZFJ IMP 2.64766
14 2R14 FMN 2.65252
15 2R14 TXD 2.65252
16 4JIQ 1L5 2.65252
17 4JIQ FMN 2.65252
18 5FYR INS 2.68456
19 2BLE 5GP 2.7248
20 1OYB HBA 2.75
21 1OYB FMN 2.75
22 1WUU GLA 2.75689
23 1UAS GLA 2.76243
24 1FNN ADP 2.82776
25 1KGZ PRP 2.89855
26 5A1S FLC 2.90179
27 1PS9 FMN 2.98063
28 3VSS FRU 3.02419
29 1FDJ 13P 3.0303
30 1OX5 1PR 3.06306
31 4D86 ADP 3.13253
32 4YMZ 13P 3.18725
33 2Q3R FMN 3.22581
34 2YPI PGA 3.23887
35 3UWB BB2 3.24675
36 1IND EOT 3.25581
37 6BFG FMN 3.25815
38 1VYP FMN 3.2967
39 1VYP TNF 3.2967
40 3W9Z FMN 3.41615
41 4WA2 SIA GAL NAG 3.42742
42 1ICP FMN 3.45745
43 2HSA FMN 3.48259
44 5GVH FMN 3.50318
45 1Z42 FMN 3.5503
46 1Z44 FMN 3.5503
47 1Z48 FMN 3.5503
48 1Z41 FMN 3.5503
49 4NAE 1GP 3.55556
50 5J5R 6G1 3.59897
51 5J5R IMP 3.59897
52 3LL5 IP8 3.61446
53 4BWL MN9 3.61842
54 2WPB ZZI 3.61842
55 1P4C FMN 3.68421
56 4M5P FMN 3.6855
57 6BKA FMN 3.74332
58 3KRU FMN 3.79009
59 2ZRU FMN 3.80435
60 6DVH FMN 3.80711
61 1TL2 NDG 3.81356
62 4C1K PEP 3.81679
63 2Q3O FMN 3.83632
64 1DJN FMN 3.84088
65 2F6U CIT 3.84615
66 2RDT FMN 3.87597
67 2RDT 2RD 3.87597
68 4A3U FMN 3.91061
69 4EWN 0VR 3.95257
70 3WSG CIT 3.96825
71 1GTE IUR 4
72 1GTE FMN 4
73 5Y5Q DUT 4.02299
74 6BVE PGA 4.08163
75 5AHN IMP 4.08998
76 2Y88 2ER 4.09836
77 4H6B 10Y 4.10256
78 1I7E IBS 4.15094
79 4IXH IMP 4.15512
80 6FLZ MMA 4.16667
81 1Q6O LG6 4.16667
82 2F5X ASP 4.16667
83 1AL8 FMN 4.17827
84 1AL8 DHP 4.17827
85 4ZNO SUC 4.1791
86 4TQK NAG 4.18719
87 4BHL ARG 4.21348
88 5AHM IMP 4.25
89 1VKF CIT 4.25532
90 1M7G AV2 4.2654
91 5LPG 71V 4.26829
92 3B0P FMN 4.28571
93 4AF0 IMP 4.31655
94 1ZGS XMM 4.47427
95 4Q4K FMN 4.48179
96 1CT9 AMP 4.5208
97 3EXS 5RP 4.52489
98 1HSL HIS 4.62185
99 2HXW FLC 4.64135
100 5A5W GUO 4.74308
101 6C4A PYR 4.75113
102 1EP2 ORO 4.82315
103 1EP2 FMN 4.82315
104 3A23 GAL 4.88599
105 5EYY MDM 4.89796
106 1EIX BMQ 4.89796
107 4WZH FMN 4.89914
108 4GN8 ASO 5.01672
109 5N9Z CAP 5.03597
110 4QNW FMN 5.10204
111 1WS1 BB2 5.12821
112 1SJD NPG 5.16304
113 3C56 PH4 5.21173
114 3N9R TD3 5.21173
115 3OIX FMN 5.21739
116 5TQZ GLC 5.33333
117 1YRB GDP 5.34351
118 1VBO MAN 5.36913
119 1VBO MAN MAN MAN 5.36913
120 2NLI LAC 5.43478
121 2NLI FMN 5.43478
122 2FLI DX5 5.45455
123 1MID LAP 5.49451
124 1MFA GLA MMA ABE 5.51181
125 4D00 SIA GAL NAG 5.52147
126 2BTM PGA 5.55556
127 2FJK 13P 5.57377
128 1QDS PGA 5.57769
129 1XXR MAN 5.59006
130 3TAO PGH 5.61798
131 5YRF GLC GLC 5.6338
132 5YRG BGC GLC 5.6338
133 1ISI NCA 5.66038
134 5XFV FMN 5.68862
135 1YID ATP 5.69801
136 2UXR ICT 5.72139
137 3H22 B53 5.72391
138 2GOU FMN 5.75342
139 3VKC FPQ 5.94406
140 2GN3 MMA 5.95238
141 2GN3 MAN 5.95238
142 2PHR MAN MAN 5.95238
143 2PHW MAN MAN 5.95238
144 2PHT MAN MAN MAN 5.95238
145 1Q8P MAN MMA 5.95238
146 2GND MAN 5.95238
147 1Q8O MAN MMA 5.95238
148 1UKG MMA 5.95238
149 2GNB MAN 5.95238
150 1TRD PGH 6
151 2XYA 7L4 6.04396
152 2UZH IPE 6.06061
153 4HKP TKW 6.08974
154 4HKP 16B 6.08974
155 1O68 KIV 6.18182
156 3AXK NDP 6.20155
157 1XKV ATP 6.23819
158 1TB3 FMN 6.25
159 2OFW ADX 6.25
160 1WDD CAP 6.25
161 2Z6J FMN 6.3253
162 2Z6I FMN 6.3253
163 5EYW PGA 6.4257
164 2V6A CAP 6.42857
165 2V67 CAP 6.42857
166 1IR2 CAP 6.42857
167 2V68 CAP 6.42857
168 1TV5 FMN 6.54628
169 4A59 AMP 6.54664
170 2HYR BGC GLC 6.55738
171 2GUC MAN 6.55738
172 2NUO BGC 6.55738
173 2GUD MAN 6.55738
174 2NU5 NAG 6.55738
175 2GUD BMA 6.55738
176 2HYQ MAN MAN 6.55738
177 4BI7 PGA 6.61479
178 1KBI PYR 6.65362
179 1KBI FMN 6.65362
180 1S17 GNR 6.66667
181 2GJN NIS 6.70732
182 2GJN FMN 6.70732
183 1UZD CAP 6.71642
184 1W55 GPP 6.73854
185 3TW1 AHN 6.75105
186 5TCI MLI 6.82927
187 2W9S TOP 6.8323
188 1F76 FMN 6.84524
189 1IGW PYR 6.91244
190 1VHN FMN 6.91824
191 3K0T BGC 6.99301
192 5VM0 9EG 7.03125
193 5YRJ BGC GLC 7.04225
194 5YRI GLC GLC 7.04225
195 5YRL GLC GLC 7.04225
196 3ZNN 4WL 7.20461
197 3ZNN FAD 7.20461
198 4ORM FMN 7.23192
199 4ORM ORO 7.23192
200 4ORM 2V6 7.23192
201 2H8Z FMN 7.24234
202 2H8Z 8CM 7.24234
203 1NW4 IMH 7.24638
204 2PEZ DAT 7.26257
205 2OEM 1AE 7.26392
206 2QCD U5P 7.30769
207 1C3M MAN MAN 7.48299
208 1OVD ORO 7.71704
209 1OVD FMN 7.71704
210 1UJP CIT 7.74908
211 4IGH FMN 7.7957
212 4IGH ORO 7.7957
213 4IGH 1EA 7.7957
214 4JOB TLA 7.82828
215 2C6Q IMP 7.97721
216 2ZE3 AKG 8
217 1OF8 G3P 8.10811
218 1OF8 PEP 8.10811
219 5N49 8LW 8.14815
220 2QX0 PH2 8.1761
221 4Z87 5GP 8.19048
222 1KBJ FMN 8.25243
223 5T0B SIA GAL NAG 8.33333
224 3C3N FMN 8.65385
225 4I9A NCN 8.68056
226 5L3S G 8.72483
227 1GXU 2HP 8.79121
228 1LYX PGA 8.87097
229 1H5R THM 8.87372
230 5F1H 5U6 8.94309
231 5X20 AOT 8.97436
232 4I7E PEP 9.09091
233 5C9P FUC 9.18635
234 3KIH GDL 9.27835
235 3HF3 FMN 9.45559
236 1M3U KPL 9.4697
237 3LRE ADP 9.57747
238 1CZA G6P 9.59651
239 1LVW TYD 10.1695
240 4CW5 FMN 10.3524
241 4GDX GLU 10.4278
242 1UUO ORO 10.4839
243 1UUO BRF 10.4839
244 1UUO FMN 10.4839
245 4AKB GAL 10.5263
246 1H5S TMP 10.5802
247 5CSS G3P 10.6195
248 3BW2 FMN 10.8401
249 1DBT U5P 10.8787
250 1I7Q PYR 10.8808
251 4UTU LRY 10.917
252 4UTW RFW 10.917
253 4Z0G 5GP 11.138
254 5UMW RBF 11.2583
255 4NS0 PIO 11.2782
256 3KIF GDL 11.3208
257 3GAY P6T 11.7647
258 4MDB RLT 12
259 4BH1 SIA GAL NAG 12.0482
260 4G9E C4L 12.1864
261 1Q5H DUD 12.9252
262 1T3D CYS 13.1488
263 3OVR 5SP 13.1579
264 3F4F UMP 13.1737
265 4XP7 FNR 13.2948
266 3UBQ SIA GAL 13.5593
267 4M44 SIA GAL NAG GAL 13.5838
268 1SW0 PGA 13.7097
269 1M5W DXP 13.9918
270 6DZN AE3 14.0845
271 1UGW GAL 14.2857
272 1UGY GLA BGC 14.2857
273 1M26 GAL A2G 14.2857
274 1KUJ MMA 14.2857
275 1JAC AMG 14.2857
276 1UGY GLA GLC 14.2857
277 1WS4 GYP 14.2857
278 1WS4 AMG 14.2857
279 1WS5 MMA 14.2857
280 4N02 FNR 14.5658
281 3P48 DUP 14.966
282 1TOQ AMG 15.0376
283 3E3U NVC 15.2284
284 5XL4 SIA 15.3409
285 1RVX SIA GAL NAG 15.625
286 1LES GLC FRU 17.1271
287 4DR9 BB2 18.2292
288 3QH2 3NM 19.0045
289 5FII PHE 27.451
290 4JEJ 1GP 34.0164
291 1MT1 AG2 34.6154
292 1JOT GAL A2G 40
Pocket No.: 3; Query (leader) PDB : 1OFD; Ligand: AKG; Similar sites found with APoc: 93
This union binding pocket(no: 3) in the query (biounit: 1ofd.bio1) has 34 residues
No: Leader PDB Ligand Sequence Similarity
1 3II1 BGC 1.49533
2 3ODU ITD 1.59363
3 5MSD AMP 1.6184
4 4B2D FBP 1.64234
5 2X1L MET 1.71756
6 5D6T NGA 2.20588
7 6B74 BEN 2.46914
8 4GAA BES 2.62726
9 1ZFJ IMP 2.64766
10 5FYR INS 2.68456
11 5MST AMP 2.6936
12 1WUU GLA 2.75689
13 1FNN ADP 2.82776
14 5I49 2KH 2.92969
15 5IN3 G1P 2.99252
16 6GH9 MIX 3.0137
17 2OQ5 BEN 3.01724
18 3N3T C2E 3.06122
19 3SBZ MLI 3.1746
20 4Y7E BMA BMA BMA 3.17919
21 4Z1D PEP 3.26087
22 2OG2 MLI 3.34262
23 4YMX ARG 3.46154
24 5TP0 BRN 3.57143
25 5J5R 6G1 3.59897
26 5J5R IMP 3.59897
27 6FLZ MMA 4.16667
28 1VKF CIT 4.25532
29 1M7G AV2 4.2654
30 2Y7I ARG 4.36681
31 1CT9 GLN 4.5208
32 2HXW FLC 4.64135
33 5EYY MDM 4.89796
34 1EIX BMQ 4.89796
35 3G5N PB2 5.04202
36 1QVJ RP5 5.13699
37 2TOH HBI 5.24781
38 2BHZ MAL 5.31561
39 5FS0 5JC 5.6872
40 1YID ATP 5.69801
41 1A0J BEN 5.8296
42 2CUN 3PG 5.85366
43 2GNB MAN 5.95238
44 2GMM MAN MAN 5.95238
45 2PHR MAN MAN 5.95238
46 2PHW MAN MAN 5.95238
47 2PHF MAN MAN BMA MAN 5.95238
48 1Q8V MAN MAN MAN 5.95238
49 1Q8P MAN MMA 5.95238
50 2PHX MAN MAN MAN MAN 5.95238
51 2PHR MAN MAN BMA MAN 5.95238
52 2PHU MAN MAN 5.95238
53 2PHX MAN MAN 5.95238
54 2PHT MAN MAN MAN BMA MAN 5.95238
55 2PHU MAN MAN MAN BMA MAN 5.95238
56 1O68 KIV 6.18182
57 1EYQ NAR 6.30631
58 4JCA CIT 6.58683
59 3MBI HSX 6.62021
60 3I7V ATP 6.71642
61 2W9S TOP 6.8323
62 2JG1 ANP 6.9697
63 5YRM BGC GLC 7.04225
64 1N71 COA 7.77778
65 1XIM XYL 7.88804
66 4JEM C5P 8.23529
67 1UI0 URA 8.29268
68 5L3W GDP 8.49673
69 1L7N ALF 8.53081
70 4JZ8 CIT 8.83281
71 1M3U KPL 9.4697
72 3SLS 77D 9.53947
73 1C3V PDC 9.79592
74 4AKB GAL 10.5263
75 3CTL S6P 10.8225
76 4JLS 3ZE 11.1842
77 1RTF BEN 11.5079
78 3GAY P6T 11.7647
79 2PW0 TRC 12.0907
80 4EHQ GBL 12.1622
81 2X52 GYT 12.2807
82 4YMJ 4EJ 12.5
83 3T7V MD0 12.5714
84 4DZ1 DAL 12.7413
85 1Q5H DUD 12.9252
86 4XZ3 ACP 13.4783
87 3JQM GTP 14.0127
88 6DZN AE3 14.0845
89 3N26 ARG 14.2276
90 5FUI APY 15.9091
91 4O48 ASP 16.5663
92 154L NAG NAG NAG 17.2973
93 1K4M CIT 20.6573
Pocket No.: 4; Query (leader) PDB : 1OFD; Ligand: FMN; Similar sites found with APoc: 73
This union binding pocket(no: 4) in the query (biounit: 1ofd.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 3VEH 0GA 1.55211
2 3ODU ITD 1.59363
3 5YBL AKG 1.91083
4 5D6T NGA 2.20588
5 1NSA BEN 2.27848
6 1EC9 XYH 2.46637
7 4GAA BES 2.62726
8 5A04 BGC 2.65487
9 5XLA SIA 2.7833
10 4RW3 IPD 2.82895
11 6GH9 MIX 3.0137
12 1FDJ 2FP 3.0303
13 3N3T C2E 3.06122
14 4Z1D PEP 3.26087
15 4I06 X8A 3.26797
16 4OOP DUP 3.61446
17 5W6Y TRP 4.11392
18 3FYP PEP 4.28571
19 1CT9 GLN 4.5208
20 1YKJ PHB 4.82234
21 2BHZ MAL 5.31561
22 6CZI 38E 5.35714
23 3A76 SPD 5.68182
24 4UMA GZ3 5.69801
25 1A0J BEN 5.8296
26 3L6C MLI 5.8997
27 2GMM MAN MAN 5.95238
28 2GND MAN MMA 5.95238
29 2PHF MAN MAN BMA MAN 5.95238
30 2PHF MAN MAN 5.95238
31 2PHR MAN MAN BMA MAN 5.95238
32 2PHT MAN MAN MAN BMA MAN 5.95238
33 1Q8S MAN MMA 5.95238
34 1Q8Q MAN MMA 5.95238
35 3DGB MUC 6.02094
36 1GYM MYG 6.37584
37 4JCA CIT 6.58683
38 5LDQ NAP 6.77966
39 4XDA ADP 6.79612
40 2JGV ADP 6.9697
41 2JG1 ANP 6.9697
42 5YRM BGC GLC 7.04225
43 5VMC SIA GAL NAG 7.32984
44 5I85 PC 7.7187
45 1N71 COA 7.77778
46 3OI7 OI7 7.87671
47 1XIM XYL 7.88804
48 4JEM C5P 8.23529
49 4KAX 4IP 8.28402
50 1UI0 URA 8.29268
51 1QPR PPC 8.4507
52 1L7N ALF 8.53081
53 2FVV IHP 8.76289
54 4JZ8 CIT 8.83281
55 4FOU C2E 9.09091
56 4Y24 TD2 9.09091
57 3SLS 77D 9.53947
58 3LJU IP9 9.84456
59 4LKK SIA GAL 10.119
60 3GD8 GOL 10.7623
61 1KNM LAT 10.7692
62 3CTL S6P 10.8225
63 4JLS 3ZE 11.1842
64 4YMJ 4EJ 12.5
65 3T7V MD0 12.5714
66 4DZ1 DAL 12.7413
67 4XZ3 ACP 13.4783
68 3JQM GTP 14.0127
69 3N26 ARG 14.2276
70 4WVW SLT 14.5833
71 5FUI APY 15.9091
72 5BWD FUM 18.3333
73 5YPU ATP 27.2727
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