Receptor
PDB id Resolution Class Description Source Keywords
1NVT 2.35 Å EC: 1.1.1.25 CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE OR MJ1084) IN COMPLEX WITH NADP+ METHANOCALDOCOCCUS JANNASCHII STRUCTURAL GENOMICS PSI PROTEIN STRUCTURE INITIATIVE NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS NYSGXRC OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE (SDH) BOUND TO NADP: INSIGHTS INTO FUNCTION AND EVOLUTION STRUCTURE V. 11 1005 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAP A:288;
B:289;
Valid;
Valid;
none;
none;
submit data
743.405 C21 H28 N7 O17 P3 c1cc(...
ZN A:290;
B:291;
Part of Protein;
Part of Protein;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1NVT 2.35 Å EC: 1.1.1.25 CRYSTAL STRUCTURE OF SHIKIMATE DEHYDROGENASE (AROE OR MJ1084) IN COMPLEX WITH NADP+ METHANOCALDOCOCCUS JANNASCHII STRUCTURAL GENOMICS PSI PROTEIN STRUCTURE INITIATIVE NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS NYSGXRC OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF SHIKIMATE 5-DEHYDROGENASE (SDH) BOUND TO NADP: INSIGHTS INTO FUNCTION AND EVOLUTION STRUCTURE V. 11 1005 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 1NVT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 10 families.
1 1NVT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 7 families.
1 1NVT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NAP; Similar ligands found: 127
No: Ligand ECFP6 Tc MDL keys Tc
1 NAP 1 1
2 NA0 0.881356 0.986301
3 TAP 0.872881 0.934211
4 NDO 0.840336 0.972603
5 NAD 0.811966 0.986111
6 N01 0.733871 0.958904
7 A3D 0.712 0.972603
8 NBP 0.707692 0.935065
9 NAD IBO 0.688 0.921053
10 NHD 0.68254 0.958904
11 NJP 0.661417 0.972973
12 NAJ PYZ 0.659091 0.898734
13 NFD 0.658915 0.934211
14 DND 0.619048 0.959459
15 NXX 0.619048 0.959459
16 ZID 0.605839 0.972603
17 NAQ 0.59854 0.922078
18 ATR 0.59292 0.917808
19 NAE 0.591241 0.946667
20 NDE 0.58042 0.986301
21 A22 0.571429 0.958904
22 AMP NAD 0.571429 0.933333
23 NAJ 0.567164 0.986111
24 A2R 0.563025 0.932432
25 NDC 0.561644 0.922078
26 NA7 0.552846 0.907895
27 ODP 0.551471 0.935065
28 A2P 0.539823 0.930556
29 8ID 0.537313 0.910256
30 NAD BBN 0.525974 0.865854
31 NPW 0.525547 0.8875
32 CNA 0.521739 0.959459
33 NZQ 0.521739 0.910256
34 NAD CJ3 0.519231 0.835294
35 NDP 0.514493 0.922078
36 PO4 PO4 A A A A PO4 0.503937 0.930556
37 DG1 0.503401 0.922078
38 1DG 0.503401 0.922078
39 NAD TDB 0.5 0.696078
40 TXP 0.5 0.922078
41 NMN AMP PO4 0.492958 0.921053
42 XNP 0.492958 0.875
43 25L 0.492308 0.958904
44 25A 0.492063 0.972222
45 NAD NDT 0.490909 0.747368
46 NMN 0.486726 0.888889
47 NGD 0.485714 0.935065
48 2AM 0.477876 0.891892
49 ADP 0.458333 0.945205
50 PAP 0.451613 0.931507
51 ADP MG 0.45082 0.906667
52 BEF ADP 0.447154 0.883117
53 ADP BEF 0.447154 0.883117
54 A2D 0.445378 0.945205
55 AN2 0.442623 0.932432
56 ADP PO3 0.44 0.944444
57 SAP 0.44 0.896104
58 AGS 0.44 0.896104
59 M33 0.439024 0.906667
60 AR6 AR6 0.438849 0.945205
61 BA3 0.438017 0.945205
62 ATP MG 0.436508 0.906667
63 ADP BMA 0.43609 0.92
64 OAD 0.43609 0.92
65 ATP 0.435484 0.945205
66 OOB 0.435115 0.958904
67 B4P 0.434426 0.945205
68 AP5 0.434426 0.945205
69 GAP 0.433071 0.92
70 0WD 0.432432 0.922078
71 5FA 0.432 0.945205
72 2A5 0.432 0.87013
73 AQP 0.432 0.945205
74 00A 0.428571 0.909091
75 CA0 0.427419 0.92
76 ALF ADP 0.426357 0.871795
77 ADP ALF 0.426357 0.871795
78 ACP 0.424 0.92
79 NAJ PZO 0.423841 0.897436
80 9SN 0.423358 0.897436
81 VO4 ADP 0.423077 0.932432
82 ANP MG 0.423077 0.896104
83 ADP VO4 0.423077 0.932432
84 WAQ 0.422222 0.884615
85 ACQ 0.421875 0.92
86 V3L 0.421875 0.945205
87 ADQ 0.421053 0.92
88 AR6 0.420635 0.918919
89 APR 0.420635 0.918919
90 ATP A A A 0.42029 0.958333
91 CO7 0.419753 0.786517
92 1ZZ 0.419118 0.841463
93 3OD 0.419118 0.92
94 DLL 0.41791 0.958904
95 AD9 0.417323 0.92
96 NAX 0.416667 0.875
97 OVE 0.416667 0.857143
98 MYR AMP 0.416058 0.841463
99 AV2 0.415385 0.868421
100 A3P 0.414634 0.944444
101 NNR 0.414414 0.72973
102 ALF ADP 3PG 0.413793 0.8625
103 OMR 0.413793 0.831325
104 LA8 ALF 3PG 0.413793 0.8625
105 ANP 0.410853 0.92
106 A1R 0.410448 0.860759
107 ABM 0.409836 0.893333
108 AMP 0.408333 0.944444
109 A 0.408333 0.944444
110 SON 0.408 0.933333
111 PPS 0.407692 0.829268
112 5AL 0.407692 0.932432
113 TYR AMP 0.407143 0.933333
114 NAI 0.406897 0.909091
115 7D3 0.406504 0.857143
116 DAL AMP 0.406015 0.932432
117 ADX 0.404762 0.829268
118 ATF 0.40458 0.907895
119 3UK 0.404412 0.945946
120 AMP DBH 0.404255 0.894737
121 139 0.402685 0.875
122 AMP MG 0.401639 0.893333
123 50T 0.401575 0.906667
124 SRP 0.401515 0.907895
125 A A 0.40146 0.972222
126 FA5 0.4 0.933333
127 3AM 0.4 0.90411
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1NVT; Ligand: NAP; Similar sites found: 414
This union binding pocket(no: 1) in the query (biounit: 1nvt.bio1) has 26 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1FWV SGA MAG FUC 0.003294 0.46051 None
2 3ICT ADP 0.00007297 0.51931 1.39373
3 3ICS ADP 0.0001124 0.51025 1.39373
4 4W6Z 8ID 0.00004978 0.49815 1.39373
5 3ICR FAD 0.003906 0.41956 1.39373
6 2NVK NAP 0.0001822 0.51982 1.74216
7 1Q9I TEO 0.0004872 0.47588 1.74216
8 2O4C NAD 0.0001746 0.46808 1.74216
9 2I3G NAP 0.00001798 0.45815 1.74216
10 1GAD NAD 0.0002725 0.45366 1.74216
11 1CER NAD 0.000189 0.44491 1.74216
12 2B9W FAD 0.004885 0.43061 1.74216
13 4CJX NAP 0.0001114 0.45883 1.88088
14 3OND ADN 0.00001024 0.5417 2.09059
15 5FI3 NAP 0.000004774 0.48319 2.09059
16 1MV8 NAD 0.00009933 0.45421 2.09059
17 2CJZ PTR 0.006156 0.44334 2.09059
18 1MUU NAD 0.0003843 0.43785 2.09059
19 4REP FAD 0.002645 0.4289 2.09059
20 3MJE NDP 0.001604 0.42698 2.09059
21 1W8D NAP 0.001274 0.42329 2.09059
22 1W73 NAP 0.00148 0.42068 2.09059
23 4PLG OXM 0.02054 0.41491 2.09059
24 1W6U NAP 0.00219 0.41386 2.09059
25 5T9F TYR 0.00006924 0.4935 2.21402
26 5T9F NAP 0.0000958 0.4862 2.21402
27 5T9E NAP 0.0001748 0.46146 2.21402
28 1O0S NAI 0.000001667 0.54418 2.43902
29 5M67 NAD 0.00001833 0.53183 2.43902
30 5M67 3D1 0.0000212 0.52907 2.43902
31 5M67 ADE 0.00002181 0.52854 2.43902
32 1V6A TRE 0.0007277 0.49079 2.43902
33 1GQ2 NAP 0.000008621 0.48248 2.43902
34 2DBZ NAP 0.00008892 0.47685 2.43902
35 2NAD NAD 0.0003488 0.46129 2.43902
36 2F5Z FAD 0.0005991 0.46073 2.43902
37 2GLX NDP 0.0005906 0.43665 2.43902
38 4MP8 NAD 0.00002115 0.42591 2.43902
39 2GZ3 NAP 0.00007483 0.42174 2.43902
40 1ZMD NAI 0.001157 0.41961 2.43902
41 1SOW NAD 0.0002723 0.41737 2.43902
42 3NDJ JHZ 0.01381 0.40448 2.43902
43 3B6Z CO7 0.007707 0.40145 2.43902
44 1E7S NAP 0.004479 0.41123 2.49221
45 5THQ NDP 0.004736 0.40766 2.57353
46 4J7U NAP 0.0146 0.40003 2.77778
47 4J7U YTZ 0.0146 0.40003 2.77778
48 1J0X NAD 0.0000429 0.51002 2.78746
49 1GUZ NAD 0.00003534 0.49322 2.78746
50 1DSS NAD 0.00003282 0.48001 2.78746
51 2WPF WPF 0.001959 0.46955 2.78746
52 5G3U FDA 0.0002904 0.46847 2.78746
53 2WPF FAD 0.00223 0.46543 2.78746
54 5G3U ITW 0.0005214 0.46438 2.78746
55 1RM4 NDP 0.0002017 0.46067 2.78746
56 4KOA NDP 0.0006518 0.45871 2.78746
57 1BZL FAD 0.003948 0.45424 2.78746
58 1R6D DAU 0.005668 0.42546 2.78746
59 1R6D NAD 0.006103 0.42482 2.78746
60 2J5V PCA 0.03942 0.41922 2.78746
61 1UXG NAD 0.0000668 0.4136 2.78746
62 3C7A NAD 0.01796 0.40379 2.78746
63 1Y1P NMN AMP PO4 0.005463 0.4008 2.78746
64 2F1K NAP 0.00002094 0.48124 2.86738
65 5BSH PRO 0.003028 0.41828 2.88809
66 2DC1 NAD 0.0002277 0.43741 2.9661
67 4MDB RLT 0.00735 0.43553 3.11111
68 3NJ4 AFX 0.00005751 0.54937 3.13589
69 3NJ4 NAD 0.00005751 0.54937 3.13589
70 4RQU NAD 0.000006055 0.48599 3.13589
71 1FEC FAD 0.003349 0.4313 3.13589
72 2NU8 COA 0.0007083 0.42361 3.13589
73 3DAG FEG 0.001817 0.41875 3.13589
74 4YAG NAI 0.006941 0.41396 3.13589
75 3OA2 NAD 0.001483 0.40364 3.13589
76 1JAY NAP 0.000006855 0.5244 3.30189
77 1SC6 NAD 0.00005718 0.43593 3.46535
78 2IZ1 ATR 0.00006376 0.54785 3.48432
79 2JHF NAD 0.0002646 0.52282 3.48432
80 5GZ6 NDP 0.0001003 0.4805 3.48432
81 2VYN NAD 0.0000147 0.47333 3.48432
82 2BRY FAD 0.0001857 0.46995 3.48432
83 2YVJ NAI 0.0003402 0.46675 3.48432
84 5GZ6 7C3 0.0001594 0.46343 3.48432
85 4TXI FAD 0.0005364 0.44941 3.48432
86 3H8V ATP 0.0008629 0.44891 3.48432
87 4TSK NDP 0.0001434 0.44891 3.48432
88 2YVF FAD 0.00229 0.44823 3.48432
89 2YVF NAD 0.002377 0.44823 3.48432
90 1LDM NAD 0.00007335 0.44279 3.48432
91 5UAO FAD 0.001287 0.44108 3.48432
92 5CAE COA 0.0004993 0.43957 3.48432
93 4RSL FAD 0.002033 0.43039 3.48432
94 5EZ7 FAD 0.002539 0.42966 3.48432
95 1HYH NAD 0.000146 0.42751 3.48432
96 1Z82 NDP 0.0007142 0.41816 3.48432
97 1YKF NAP 0.0005379 0.41255 3.48432
98 4Q9N NAI 0.004413 0.41023 3.48432
99 4MO2 FDA 0.007089 0.40861 3.48432
100 4KQW NAP 0.0003472 0.40276 3.48432
101 3N6M GTP 0.02707 0.40251 3.48432
102 5CAE SIN 0.000581 0.40145 3.48432
103 1O8B ABF 0.01416 0.4169 3.65297
104 1PN0 IPH 0.0006565 0.46397 3.7594
105 1PN0 FAD 0.0006243 0.46397 3.7594
106 1F06 2NP 0.00005453 0.49358 3.83275
107 3LXD FAD 0.0005209 0.454 3.83275
108 1V8B NAD 0.000007266 0.44701 3.83275
109 3WQQ IB3 0.002177 0.43459 3.83275
110 4KP7 NAP 0.003195 0.43308 3.83275
111 4KP7 1UQ 0.00356 0.42739 3.83275
112 1F06 NDP 0.00005453 0.42356 3.83275
113 2J8Z NAP 0.002582 0.41709 3.83275
114 1U3U NAD 0.00001899 0.41018 3.83275
115 1U3U BNF 0.00001899 0.41018 3.83275
116 3WLE NAD 0.0001726 0.40788 3.83275
117 2JL1 NAP 0.004376 0.40779 3.83275
118 4J4H NAI 0.0003598 0.52247 3.861
119 4J4H 1J1 0.00003264 0.51866 3.861
120 4JK3 NAD 0.000007548 0.49738 3.861
121 1I36 NAP 0.0002328 0.44853 4.16667
122 2BH9 NAP 0.000293 0.47936 4.18118
123 3ITJ CIT 0.001196 0.4675 4.18118
124 3WBF NAP 0.00002683 0.46325 4.18118
125 4OPC FDA 0.002794 0.4618 4.18118
126 2HJR APR 0.0001907 0.46025 4.18118
127 4L8V NAP 0.0002805 0.45806 4.18118
128 3UCL NAP 0.002044 0.45528 4.18118
129 3UCL CYH 0.00199 0.4538 4.18118
130 3UCL FAD 0.00199 0.4538 4.18118
131 1V59 NAD 0.001786 0.45232 4.18118
132 3V1Y NAD 0.000138 0.45025 4.18118
133 2B4R NAD 0.00008746 0.43624 4.18118
134 3WBF API 0.00004032 0.43424 4.18118
135 2B4R AES 0.000162 0.43151 4.18118
136 5KVS 6XR 0.001751 0.42944 4.18118
137 1LJ8 NAD 0.001358 0.42894 4.18118
138 4E5N NAD 0.0001425 0.42719 4.18118
139 5KVS NAP 0.001117 0.42557 4.18118
140 1X87 NAD 0.001416 0.42474 4.18118
141 1M2W NAD 0.001478 0.42398 4.18118
142 3VPH OXM 0.00006839 0.42189 4.18118
143 2B5W NAP 0.0001311 0.41423 4.18118
144 3C1O NAP 0.002503 0.41154 4.18118
145 3VPH NAD 0.0003573 0.40879 4.18118
146 5LD5 NAD 0.0004144 0.44651 4.18994
147 2PEL LBT 0.02313 0.41019 4.23729
148 5O4J 9KH 0.000661 0.44836 4.37956
149 5O4J SAH 0.000661 0.44836 4.37956
150 5O4J PJL 0.0006733 0.4467 4.37956
151 1HKU NAD 0.0005377 0.4082 4.46927
152 1KYQ NAD 0.0001589 0.48635 4.52962
153 1EZ4 NAD 0.0001348 0.46602 4.52962
154 5MBX SP5 0.001373 0.45427 4.52962
155 5MBX FAD 0.001373 0.45427 4.52962
156 5AYV KPL 0.000761 0.4471 4.52962
157 1TDF NAP 0.003347 0.44681 4.52962
158 1TDF FAD 0.001907 0.44193 4.52962
159 5AYV NAP 0.0003656 0.44077 4.52962
160 1NE7 AGP 0.008611 0.41535 4.52962
161 2AG8 NAP 0.002406 0.42198 4.56274
162 1UWK NAD 0.001967 0.44042 4.66786
163 5KMS NAD 0.00382 0.43685 4.69136
164 5KMS FAD 0.002477 0.42678 4.69136
165 3CIF NAD 0.00003175 0.49512 4.87805
166 1MO9 FAD 0.001742 0.46401 4.87805
167 1MO9 KPC 0.00316 0.45263 4.87805
168 4XDY NAI 0.000126 0.45021 4.87805
169 3CIF G3H 0.0007761 0.44674 4.87805
170 5EOW FAD 0.001923 0.429 4.87805
171 4USQ FAD 0.003312 0.41914 4.87805
172 2AE2 NAP 0.004863 0.41865 4.87805
173 2AE2 PTO 0.004863 0.41865 4.87805
174 1RYD NDP 0.0001199 0.40816 4.87805
175 4EIP FAD 0.0114 0.40812 4.87805
176 4EIP K2C 0.0114 0.40812 4.87805
177 2PZM UDP 0.01136 0.40563 4.87805
178 2PZM NAD 0.01136 0.40563 4.87805
179 1H6C NDP 0.0001547 0.40488 4.87805
180 2FR1 NDP 0.0005693 0.40351 4.87805
181 1G0N NDP 0.007961 0.40751 4.947
182 1G0N PHH 0.01099 0.40444 4.947
183 1O6Z NAD 0.0001991 0.45554 4.9505
184 2BKX F6R 0.01007 0.41213 4.95868
185 1LSS NAD 0.0002619 0.46283 5
186 4UP3 NDP 0.0001278 0.45256 5.09554
187 4UP3 FAD 0.001618 0.43906 5.09554
188 1DRV A3D 0.0002238 0.46148 5.12821
189 1VL0 NAI 0.003512 0.40722 5.13699
190 3AD8 NAD 0.0003969 0.45761 5.22648
191 3UOY NAP 0.00187 0.45638 5.22648
192 3UOY FAD 0.00187 0.45638 5.22648
193 4MIG G3F 0.001211 0.45236 5.22648
194 1GV0 NAD 0.00004853 0.44835 5.22648
195 3AD8 PYC 0.004344 0.43914 5.22648
196 3AD8 FAD 0.004344 0.43914 5.22648
197 4R5M NAP 0.000151 0.43693 5.22648
198 4GKV NAD 0.00003667 0.43533 5.22648
199 4PIV NDP 0.001518 0.42935 5.22648
200 4TM3 FAD 0.009584 0.42476 5.22648
201 2IXB NAD 0.0001596 0.42449 5.22648
202 4R5M 4NO 0.0001778 0.42443 5.22648
203 2C29 NAP 0.001478 0.40185 5.22648
204 4XYB NDP 0.0003387 0.40121 5.22648
205 1X14 NAD 0.009825 0.4055 5.23691
206 3CH6 NAP 0.008264 0.42391 5.24476
207 1JNR FAD 0.007107 0.4336 5.33333
208 4J1Q NDP 0.003085 0.4125 5.38793
209 4OOE NDP 0.001041 0.41721 5.44554
210 3UIE ANP 0.01854 0.40691 5.5
211 5KKA 6V0 0.0002483 0.46326 5.57491
212 1DXY NAD 0.00007035 0.46083 5.57491
213 1R37 NAD 0.000382 0.4583 5.57491
214 3ULK NDP 0.0003868 0.45161 5.57491
215 3JV7 NAD 0.00006615 0.44512 5.57491
216 2CVZ NDP 0.0002956 0.43705 5.57491
217 5VN0 NAI 0.0009756 0.41731 5.57491
218 3IHG FAD 0.0007208 0.41182 5.57491
219 2GDZ NAD 0.004523 0.40848 5.61798
220 5TUF FAD 0.0002933 0.41126 5.62347
221 4HXY NDP 0.0006024 0.40763 5.70776
222 4HXY ACA 0.03484 0.40104 5.70776
223 2V3A FAD 0.001078 0.44435 5.72917
224 2Q0L NAP 0.000167 0.49061 5.78778
225 1EJH M7G 0.02499 0.40987 5.78947
226 1AE1 NAP 0.00604 0.40705 5.86081
227 5FJN FAD 0.001123 0.44795 5.92105
228 5FJN BE2 0.001318 0.44795 5.92105
229 5H81 NAP 0.000001132 0.55691 5.92335
230 2CDC NAP 0.00008132 0.51646 5.92335
231 1PJS NAD 0.00001249 0.4708 5.92335
232 1LDN NAD 0.000161 0.46952 5.92335
233 4IDC 1XX 0.0002007 0.46855 5.92335
234 4IDC NDP 0.0002007 0.46855 5.92335
235 3S5W NAP 0.0008112 0.45898 5.92335
236 4ZGS NAD 0.0001962 0.4558 5.92335
237 1WP4 NDP 0.0001357 0.4451 5.92335
238 1E1M FAD 0.002702 0.44046 5.92335
239 3LAD FAD 0.001741 0.43978 5.92335
240 1I0Z NAI 0.00009591 0.43887 5.92335
241 1SAY PYR 0.00004943 0.43405 5.92335
242 3TWO NDP 0.0000263 0.43253 5.92335
243 9LDB NAD 0.0001128 0.43055 5.92335
244 9LDT NAD 0.0001282 0.42893 5.92335
245 1LLU NAD 0.0001242 0.4194 5.92335
246 1YJQ NAP 0.000115 0.41756 5.92335
247 5JE8 NAD 0.001644 0.41415 5.92335
248 5TUK FAD 0.001286 0.40641 5.92335
249 2Q46 NAP 0.00434 0.40196 5.92335
250 4DPL NAP 0.00004819 0.45171 6.27178
251 1E3I CXF 0.00002554 0.42984 6.27178
252 1X7D NAD 0.0002969 0.42788 6.27178
253 2ZB3 NDP 0.001445 0.40309 6.27178
254 3V0H I3P 0.03229 0.40255 6.48968
255 2DFV NAD 0.0000244 0.47396 6.62021
256 2HMT NAI 0.0002337 0.4607 6.62021
257 3CGD FAD 0.002001 0.46065 6.62021
258 3CGD COA 0.002001 0.46065 6.62021
259 5BUK FAD 0.000832 0.45561 6.62021
260 1QMG APX 0.0003792 0.44808 6.62021
261 3F8D FAD 0.005218 0.43801 6.62021
262 3NGL NAP 0.0009827 0.43848 6.88406
263 1C3V NDP 0.0003697 0.4145 6.93878
264 5U8U FAD 0.0008128 0.47135 6.96864
265 5J60 FAD 0.0003165 0.46928 6.96864
266 1F8F NAD 0.00008932 0.46358 6.96864
267 3SQP FAD 0.00949 0.45368 6.96864
268 3H9E NAD 0.0001401 0.45002 6.96864
269 5J7X FAD 0.00154 0.43778 6.96864
270 1HDG NAD 0.0005889 0.43142 6.96864
271 2A92 NAI 0.0004761 0.41244 6.96864
272 3RKR NAP 0.01973 0.40181 6.96864
273 4YSX FAD 0.0002065 0.47719 7.0922
274 2DT5 NAD 0.00001363 0.47594 7.109
275 5UAV NDP 0.0000261 0.50994 7.14286
276 5UAV TFB 0.0000261 0.50994 7.14286
277 2BGM NAJ 0.001401 0.4249 7.19424
278 1PL6 NAD 0.000009711 0.52348 7.31707
279 4D3F NAP 0.00004843 0.4706 7.31707
280 1BW9 NAD 0.0002183 0.46193 7.31707
281 1PL6 572 0.00001163 0.46058 7.31707
282 1P0F NAP 0.00001799 0.45467 7.31707
283 1RP0 AHZ 0.0004551 0.45237 7.31707
284 1BXG NAD 0.0003465 0.44945 7.31707
285 5DN9 NAD 0.0005793 0.44941 7.31707
286 1C1X NAD 0.0002347 0.44163 7.31707
287 5MQ6 NDP 0.002031 0.41835 7.31707
288 2QRK AMP 0.00007185 0.40852 7.31707
289 3NT6 FAD 0.009911 0.40346 7.31707
290 2BOS GLA GAL GLC NBU 0.01585 0.42128 7.35294
291 2BOS GLA GAL GLC 0.0189 0.41678 7.35294
292 5D4V SAH 0.0009865 0.42016 7.46269
293 5GT9 NAP 0.003064 0.41677 7.60456
294 4E13 NAD 0.00005236 0.49247 7.66551
295 5JCM NAD 0.000524 0.47996 7.66551
296 1EBF NAD 0.00008601 0.47013 7.66551
297 5JCM ISD 0.001271 0.4626 7.66551
298 5JCM FAD 0.001225 0.4626 7.66551
299 3OJO NAD 0.000241 0.45611 7.66551
300 2R4J 13P 0.003371 0.43542 7.66551
301 1NVM NAD 0.0001018 0.43295 7.66551
302 2PV7 NAD 0.0003695 0.43031 7.66551
303 3ZNN FAD 0.005794 0.42805 7.66551
304 3NTD FAD 0.00751 0.40859 7.66551
305 4II2 ATP 0.006496 0.40367 7.97546
306 4RDH AMP 0.003435 0.43007 7.98611
307 3KB6 NAD 0.000268 0.43395 8.01394
308 4JBI NDP 0.000945 0.43018 8.01394
309 1HYE NAP 0.001367 0.42536 8.01394
310 1ZQ9 SAM 0.005014 0.41513 8.07018
311 5X20 NAD 0.0005594 0.43934 8.36237
312 1FS5 TLA 0.006596 0.41698 8.36237
313 3O26 NDP 0.003575 0.41268 8.36237
314 1ZEM NAD 0.002844 0.40051 8.36237
315 4IF4 BEF 0.03161 0.40604 8.65385
316 3BAZ NAP 0.00004075 0.47613 8.7108
317 1YFS ALA 0.01401 0.42256 8.7108
318 2YYY NAP 0.001201 0.40569 8.74636
319 1A5Z NAD 0.001035 0.43383 8.77743
320 1YQD NAP 0.00001534 0.44882 9.01639
321 1YS4 NAP 0.00009341 0.47726 9.05923
322 4D7E FAD 0.001233 0.43954 9.05923
323 2WSB NAD 0.001578 0.43953 9.05923
324 5ITV NAI 0.001373 0.43116 9.05923
325 2ZAT NAP 0.001219 0.40082 9.05923
326 2D2I NAP 0.0008941 0.42944 9.47368
327 1J5P NAD 0.0003222 0.43217 9.48617
328 2G5C NAD 0.0003727 0.41721 9.60854
329 1O94 ADP 0.0001716 0.45813 9.7561
330 3GFB NAD 0.00006512 0.45781 9.7561
331 1DJN ADP 0.0002206 0.45768 9.7561
332 1H2B NAJ 0.00005745 0.43356 9.7561
333 4FC7 COA 0.003136 0.4288 9.7561
334 3GD4 NAD 0.001802 0.42047 9.7561
335 5KQA GSH 0.01625 0.4188 9.84848
336 4BV6 FAD 0.0009714 0.4496 10.1045
337 4XB2 HSE 0.000181 0.46894 10.453
338 4XB2 NDP 0.00007134 0.46894 10.453
339 1B8U NAD 0.001891 0.42642 10.453
340 1GR0 NAD 0.00008257 0.4254 10.453
341 5L4S 6KX 0.005163 0.41444 10.453
342 5L4S NAP 0.005163 0.41444 10.453
343 3B20 NAD 0.0002682 0.45037 10.6195
344 1WDK NAD 0.00002194 0.49855 10.8014
345 2GCG NDP 0.0006085 0.41756 10.8014
346 1Y8Q ATP 0.002479 0.4117 10.8014
347 4USR FAD 0.006694 0.40519 10.8014
348 1Y75 NAG 0.02083 0.40835 11.0169
349 1ZH8 NAP 0.00006646 0.48026 11.1498
350 1LTH NAD 0.00005059 0.47936 11.1498
351 1J49 NAD 0.00006108 0.45055 11.1498
352 4X9M FAD 0.001405 0.44168 11.1498
353 4XDZ NDP 0.000496 0.44144 11.1498
354 5E4R NAP 0.0007034 0.44017 11.1498
355 2BZ1 TAU 0.006705 0.44206 11.2245
356 5N53 8NB 0.02803 0.40751 11.2821
357 4D42 W0I 0.008797 0.41549 11.3475
358 4D42 NAP 0.008797 0.41549 11.3475
359 5BXV MGP 0.02317 0.41288 11.3636
360 1LVL NAD 0.0005928 0.44779 11.4983
361 1RYI FAD 0.002836 0.42968 11.4983
362 4RPL FAD 0.009224 0.42306 11.4983
363 4RPL 3UC 0.01246 0.41898 11.4983
364 4JJF FE9 0.001413 0.40697 11.4983
365 1O5I NAD 0.009064 0.40056 11.4983
366 1C3M MAN MAN 0.01515 0.4113 11.5646
367 5T2U NAP 0.002727 0.42143 11.6935
368 3GGO ENO 0.0001729 0.48167 11.8467
369 2VT3 ATP 0.000007225 0.4576 11.8467
370 4B7X NAP 0.0004452 0.40555 11.8467
371 1UJ5 5RP 0.01762 0.4042 11.8467
372 5U5G NAP 0.00009971 0.47482 12.5436
373 5N2I NAP 0.000006613 0.49972 12.892
374 1TB4 PEJ 0.0003094 0.42183 12.892
375 5EPO NAP 0.006294 0.40258 12.892
376 4BVA NDP 0.000003011 0.54074 13.2404
377 4BVA T3 0.0000182 0.51941 13.2404
378 5VKT NAP 0.000009456 0.51846 13.2404
379 1PR9 NAP 0.001188 0.43644 13.2404
380 3D3W NAP 0.001395 0.43355 13.2404
381 2GV8 NDP 0.002154 0.41415 13.2404
382 1OMO NAD 0.000008803 0.50974 13.5889
383 1M0S CIT 0.02008 0.40916 13.5889
384 1PS9 FAD 0.0006281 0.4577 13.9373
385 1PS9 NAP 0.0007231 0.43652 13.9373
386 1LUA NAP 0.00004854 0.49386 14.2857
387 4YCA NDP 0.00005792 0.46302 14.6259
388 3QV1 NAD 0.0000942 0.47047 14.6341
389 3WV8 ATP 0.001822 0.40044 14.6789
390 5JCA NDP 0.0007406 0.47095 14.9826
391 1CF2 NAP 0.0001162 0.46864 14.9826
392 1D1T NAD 0.00001017 0.46355 14.9826
393 5JCA FAD 0.0007754 0.45486 14.9826
394 4A0S NAP 0.0004942 0.41248 14.9826
395 4CQM NAP 0.00122 0.40021 15.1639
396 1CDO NAD 0.00004258 0.46866 15.6794
397 3B1J NAD 0.000465 0.41694 16
398 1E5Q NDP 0.00006673 0.45037 16.0279
399 1VM6 NAD 0.004436 0.40313 16.6667
400 3NUG NAD 0.003508 0.41435 16.7247
401 5T67 JHZ 0.01489 0.40223 16.7247
402 2VHW NAI 0.00001942 0.51533 17.0732
403 3B1F NAD 0.00002281 0.50271 17.0732
404 1DIG NAP 0.000175 0.42303 17.4216
405 1DIG L37 0.0001847 0.41881 17.4216
406 5T46 MGP 0.02111 0.42027 18.1818
407 4XZ3 COA 0.001418 0.41835 18.4669
408 4XYM COA 0.005434 0.41757 19.8606
409 3ABI NAD 0.00002783 0.45821 20.2091
410 5L95 AMP 0.0009467 0.41328 21.25
411 2CDU ADP 0.0001059 0.49429 22.9965
412 2VOH CIT 0.00125 0.47493 24.8408
413 1US5 GLU 0.01021 0.41571 27.5261
414 4K28 NAD 0.0000000002377 0.6797 44.9814
Pocket No.: 2; Query (leader) PDB : 1NVT; Ligand: NAP; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1nvt.bio1) has 21 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Feedback