Receptor
PDB id Resolution Class Description Source Keywords
1MGP 2 Å NON-ENZYME: BINDING HYPOTHETICAL PROTEIN TM841 FROM THERMOTOGA MARITIMA REVEALS FATTY ACID BINDING FUNCTION THERMOTOGA MARITIMA TWO DOMAIN STRUCTURE WITH MIXED ALPHA/BETA STRUCTURES IN BOTH DOMAINS STRUCTURAL GENOMICS BSGC STRUCTURE FUNDED BYNIH PROTEIN STRUCTURE INITIATIVE PSI BERKELEY STRUCTURALGENOMICS CENTER LIPID BINDING PROTEIN
Ref.: CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TM841 OF THERMOTOGA MARITIMA, REVEALS ITS FUNCTION AS FATTY ACID BINDING PROTEIN PROTEINS V. 50 526 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
PLM A:314;
Valid;
none;
submit data
256.424 C16 H32 O2 CCCCC...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1MGP 2 Å NON-ENZYME: BINDING HYPOTHETICAL PROTEIN TM841 FROM THERMOTOGA MARITIMA REVEALS FATTY ACID BINDING FUNCTION THERMOTOGA MARITIMA TWO DOMAIN STRUCTURE WITH MIXED ALPHA/BETA STRUCTURES IN BOTH DOMAINS STRUCTURAL GENOMICS BSGC STRUCTURE FUNDED BYNIH PROTEIN STRUCTURE INITIATIVE PSI BERKELEY STRUCTURALGENOMICS CENTER LIPID BINDING PROTEIN
Ref.: CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN, TM841 OF THERMOTOGA MARITIMA, REVEALS ITS FUNCTION AS FATTY ACID BINDING PROTEIN PROTEINS V. 50 526 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 922 families.
1 4X9X - OLA C18 H34 O2 CCCCCCCCC=....
2 1MGP - PLM C16 H32 O2 CCCCCCCCCC....
3 3FYS - PLM C16 H32 O2 CCCCCCCCCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: PLM; Similar ligands found: 52
No: Ligand ECFP6 Tc MDL keys Tc
1 MYR 1 1
2 F23 1 1
3 11A 1 1
4 STE 1 1
5 KNA 1 1
6 TDA 1 1
7 DCR 1 1
8 DAO 1 1
9 DKA 1 1
10 PLM 1 1
11 F15 1 1
12 OCA 0.956522 1
13 SHV 0.833333 0.952381
14 KTC 0.793103 0.875
15 AZ1 0.73913 0.64
16 6NA 0.72 0.904762
17 NER 0.71875 0.954545
18 OLA 0.71875 0.954545
19 ELA 0.71875 0.954545
20 VCA 0.666667 0.954545
21 PAM 0.666667 0.954545
22 PML 0.625 0.6
23 3LA 0.606061 0.8
24 LEA 0.6 0.809524
25 MYZ 0.588235 0.909091
26 12H 0.586207 0.615385
27 ODD 0.567568 0.913043
28 BRC 0.566667 0.666667
29 14V 0.555556 0.740741
30 M12 0.545455 0.869565
31 14U 0.542857 0.703704
32 EIC 0.538462 0.913043
33 EOD 0.538462 0.7
34 BUA 0.48 0.666667
35 RCL 0.468085 0.84
36 HXD 0.459459 0.807692
37 56S 0.459459 0.653846
38 ODT 0.452381 0.782609
39 3X1 0.444444 0.818182
40 LNL 0.44186 0.826087
41 CNS 0.435897 0.68
42 6UL 0.435897 0.68
43 5UF 0.432432 0.807692
44 243 0.428571 0.807692
45 GYM 0.418605 0.606061
46 PL3 0.413793 0.75
47 O8N 0.413793 0.75
48 1DO 0.413793 0.75
49 F09 0.413793 0.75
50 OC9 0.413793 0.75
51 DE1 0.413793 0.75
52 T25 0.403846 0.677419
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1MGP; Ligand: PLM; Similar sites found: 47
This union binding pocket(no: 1) in the query (biounit: 1mgp.bio1) has 27 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 3B9Z CO2 0.02678 0.41223 1.91693
2 4B9E FAH 0.01492 0.41254 1.99336
3 3R75 BEZ 0.009563 0.43177 2.23642
4 2WG9 OCA 0.008473 0.43453 2.30769
5 4IA6 EIC 0.004344 0.4523 2.55591
6 2C5S AMP 0.01342 0.41955 2.55591
7 2Z9I GLY ALA THR VAL 0.03757 0.40374 2.55591
8 3OQJ 3CX 0.006888 0.42979 2.72374
9 3E8T UQ8 0.01365 0.40687 2.72727
10 1RL4 BL5 0.02286 0.4314 3.19149
11 1LCF OXL 0.01555 0.41201 3.19489
12 4Q86 AMP 0.0226 0.40033 3.19489
13 3RGA LSB 0.01401 0.40328 3.51438
14 2PZI AXX 0.02236 0.40056 3.51438
15 3BF8 MLA 0.04008 0.40242 3.52941
16 3L1N PLM 0.036 0.40142 3.60825
17 3AQT RCO 0.03045 0.40406 3.67347
18 3TL1 JRO 0.01621 0.41973 3.77358
19 3KO0 TFP 0.0446 0.404 3.9604
20 3I7S PYR 0.02667 0.40363 4.10959
21 4OFG PCG 0.02215 0.40076 4.16667
22 1RJW ETF 0.01268 0.42996 4.47284
23 5EK3 5PK 0.03093 0.40091 4.47284
24 2WZ5 MET 0.001406 0.45958 4.57516
25 1OSS BEN 0.0366 0.40103 4.93274
26 3P9T TCL 0.01234 0.41716 5.02283
27 4UYG 73B 0.03684 0.40088 5.09554
28 3OV6 MK0 0.002617 0.41527 5.7508
29 1RYO OXL 0.02745 0.40519 5.7508
30 5U9J GER 0.03488 0.40214 5.91716
31 3SHR CMP 0.01226 0.41731 6.02007
32 3V1S 0LH 0.04497 0.40291 6.07029
33 5U83 ZN8 0.01503 0.42147 6.13208
34 4DO1 ANN 0.01722 0.42072 6.38978
35 2QCX PF1 0.03991 0.4 6.46388
36 4V3I ASP LEU THR ARG PRO 0.0326 0.40542 6.61479
37 4DSU BZI 0.03344 0.40476 6.87831
38 2BYC FMN 0.008269 0.41768 8.0292
39 5KEW 6SB 0.02201 0.41273 8.51064
40 2ZV2 609 0.01925 0.40751 9.39597
41 2IYG FMN 0.008092 0.4221 9.67742
42 4G8R 96P 0.0419 0.4011 10.2236
43 3RET SAL 0.01548 0.40471 10.8911
44 3RET PYR 0.01548 0.40471 10.8911
45 2GBB CIT 0.01381 0.41891 14.7436
46 5F1H 5U6 0.01977 0.40317 17.8862
47 5N18 8HZ 0.02418 0.41105 23.8532
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