Receptor
PDB id Resolution Class Description Source Keywords
1LV0 2 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE RAB EFFECTOR GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR (GDI) IN COMPLEX WITH A G ERANYLGERANYL (GG) PEPTIDE BOS TAURUS PROTEIN-LIGAND COMPLEX SIGNALING PROTEIN
Ref.: GERANYLGERANYL SWITCHING REGULATES GDI-RAB GTPASE RECYCLING. STRUCTURE V. 11 347 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GER A:1000;
Valid;
none;
submit data
274.484 C20 H34 CC=C(...
SO4 A:1001;
A:1002;
A:1003;
Invalid;
Invalid;
Invalid;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1LV0 2 Å NON-ENZYME: SIGNAL_HORMONE CRYSTAL STRUCTURE OF THE RAB EFFECTOR GUANINE NUCLEOTIDE DISSOCIATION INHIBITOR (GDI) IN COMPLEX WITH A G ERANYLGERANYL (GG) PEPTIDE BOS TAURUS PROTEIN-LIGAND COMPLEX SIGNALING PROTEIN
Ref.: GERANYLGERANYL SWITCHING REGULATES GDI-RAB GTPASE RECYCLING. STRUCTURE V. 11 347 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 289 families.
1 1LV0 - GER C20 H34 CC=C(/C)CC....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 214 families.
1 1LV0 - GER C20 H34 CC=C(/C)CC....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 181 families.
1 1LV0 - GER C20 H34 CC=C(/C)CC....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GER; Similar ligands found: 12
No: Ligand ECFP6 Tc MDL keys Tc
1 GER 1 1
2 FAR 1 1
3 650 0.785714 0.8125
4 SQL 0.709677 0.941176
5 FOH 0.628571 0.695652
6 FOF 0.628571 0.695652
7 ELX 0.628571 0.695652
8 N1S 0.628571 0.695652
9 64Z 0.514286 0.652174
10 CTV 0.447368 0.684211
11 28U 0.444444 0.615385
12 GRQ 0.421053 0.722222
Similar Ligands (3D)
Ligand no: 1; Ligand: GER; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1LV0; Ligand: GER; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1lv0.bio1) has 5 residues
No: Leader PDB Ligand Sequence Similarity
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