Receptor
PDB id Resolution Class Description Source Keywords
1LRH 1.9 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF AUXIN-BINDING PROTEIN 1 IN COMPLEX WITH NAPHTHALENE ACETIC ACID ZEA MAYS BETA JELLYROLL DOUBLE STRANDED PARALLEL BETA HELIX GERMIN PROTEIN PROTEIN BINDING
Ref.: CRYSTAL STRUCTURE OF AUXIN-BINDING PROTEIN 1 IN COM AUXIN. EMBO J. V. 21 2877 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
NAG NAG BMA MAN MAN MAN A:181;
B:181;
C:181;
D:181;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data n/a n/a n/a n/a
NLA A:5190;
B:6190;
C:7190;
D:8190;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
Kd = 0.15 uM
186.207 C12 H10 O2 c1ccc...
ZN A:180;
B:180;
C:180;
D:180;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
65.409 Zn [Zn+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1LRH 1.9 Å NON-ENZYME: BINDING CRYSTAL STRUCTURE OF AUXIN-BINDING PROTEIN 1 IN COMPLEX WITH NAPHTHALENE ACETIC ACID ZEA MAYS BETA JELLYROLL DOUBLE STRANDED PARALLEL BETA HELIX GERMIN PROTEIN PROTEIN BINDING
Ref.: CRYSTAL STRUCTURE OF AUXIN-BINDING PROTEIN 1 IN COM AUXIN. EMBO J. V. 21 2877 2002
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 473 families.
1 1LRH Kd = 0.15 uM NLA C12 H10 O2 c1ccc2c(c1....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 355 families.
1 1LRH Kd = 0.15 uM NLA C12 H10 O2 c1ccc2c(c1....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 272 families.
1 1LRH Kd = 0.15 uM NLA C12 H10 O2 c1ccc2c(c1....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: NLA; Similar ligands found: 2
No: Ligand ECFP6 Tc MDL keys Tc
1 NLA 1 1
2 3N4 0.413793 0.708333
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1LRH; Ligand: NLA; Similar sites found: 85
This union binding pocket(no: 1) in the query (biounit: 1lrh.bio2) has 16 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5IXH OTP 0.03511 0.4103 None
2 5TPV TYD 0.001811 0.41068 1.96078
3 3OPT AKG 0.0003851 0.48416 2.45399
4 5FPX GLY SER SER HIS HIS HIS HIS HIS 0.00001434 0.47995 2.65487
5 5HV0 AKG 0.002849 0.43169 3.06748
6 3N9Q OGA 0.0005117 0.42748 3.06748
7 3N9O OGA 0.0006641 0.42392 3.06748
8 3N9P OGA 0.0007655 0.42148 3.06748
9 3PUR 2HG 0.0077 0.41694 3.06748
10 5EPA AKG 0.003592 0.41441 3.06748
11 4P42 PEE 0.02076 0.40446 3.06748
12 3L24 GOA 0.01069 0.40095 3.06748
13 3VV1 GAL FUC 0.009073 0.42225 3.125
14 1ZZ7 S0H 0.001272 0.45438 3.68098
15 3SCH TB6 0.00244 0.44306 3.68098
16 5L9V OGA 0.004002 0.41981 3.68098
17 3HQR OGA 0.003033 0.41735 3.68098
18 5L9B AKG 0.004646 0.41678 3.68098
19 4LIT AKG 0.01252 0.40807 3.68098
20 2HZQ STR 0.01603 0.40011 3.68098
21 4IGQ OGA 0.002923 0.42744 4.29448
22 4P7X AKG 0.004553 0.42638 4.29448
23 4P7X YCP 0.004553 0.42638 4.29448
24 2JIG PD2 0.009878 0.40583 4.29448
25 5JSP DQY 0.00006354 0.47596 4.90798
26 4ZXA H8N 0.002614 0.43354 4.90798
27 2IUW AKG 0.009811 0.40597 5.04202
28 1H2K OGA 0.00003729 0.53256 5.52147
29 1H2M OGA 0.00003837 0.5318 5.52147
30 3P3N AKG 0.00004526 0.52802 5.52147
31 2XUM OGA 0.00004744 0.52689 5.52147
32 2Y0I AKG 0.00006843 0.52025 5.52147
33 4B7E OGA 0.00009427 0.51283 5.52147
34 2WA4 069 0.0000338 0.50437 5.52147
35 5IVE 6E8 0.0009483 0.47882 5.52147
36 4XCB HY0 0.001048 0.47044 5.52147
37 4XCB AKG 0.00167 0.42512 5.52147
38 1GQG DCD 0.0005329 0.40515 5.52147
39 5UQD AKG 0.005598 0.42853 5.65611
40 4J25 OGA 0.005381 0.4185 6.13497
41 3H7J PPY 0.0000781 0.47825 6.74847
42 2GC0 PAN 0.0001579 0.45187 6.74847
43 5TVM PUT 0.005567 0.42822 6.74847
44 4NAO AKG 0.008838 0.40769 6.74847
45 4QM9 CYS 0.00005558 0.53151 7.36196
46 3KV4 OGA 0.00009631 0.5133 7.36196
47 3W21 AKG 0.001465 0.45497 7.36196
48 4QXB OGA 0.0005786 0.45313 7.36196
49 3H9A PPY 0.004809 0.42594 7.36196
50 5KR7 6X9 0.007019 0.40841 7.36196
51 3KV5 OGA 0.0002298 0.4949 7.97546
52 5FLJ QUE 0.00003414 0.53567 8.58896
53 5I0U DCY 0.00003684 0.51474 8.58896
54 1J3R 6PG 0.004943 0.41552 9.20245
55 1Y9Q MED 0.01128 0.40609 9.81595
56 5T2Z 017 0.02288 0.40766 10.101
57 4XAC AKG 0.002323 0.41129 11.0429
58 2A1X AKG 0.00967 0.40151 11.0429
59 3PUA OGA 0.0002646 0.49129 11.6564
60 3ZDS HQ9 0.002806 0.44007 11.6564
61 3ZDS HMQ 0.00155 0.43904 11.6564
62 3ZDS OMD 0.003507 0.4327 11.6564
63 3ZDS M8O 0.00788 0.41055 11.6564
64 4ZU4 4TG 0.002198 0.40995 12.1622
65 5TFZ 7BC 0.00002389 0.53115 12.6667
66 3AVR OGA 0.0002693 0.49049 12.8834
67 3AVS OGA 0.0008124 0.45785 12.8834
68 5FP3 3JI 0.0001449 0.42154 12.8834
69 4GJY OGA 0.0001135 0.5078 13.4969
70 5F3I 5UJ 0.003764 0.47015 13.4969
71 2Q8C AKG 0.001285 0.45735 13.4969
72 5LY2 OGA 0.001267 0.4568 13.4969
73 2Q8E OGA 0.001301 0.45678 13.4969
74 2OS2 OGA 0.001904 0.44816 13.4969
75 2YBP 2HG 0.002673 0.44096 13.4969
76 2P5B OGA 0.004793 0.41864 13.4969
77 5FWE OGA 0.001034 0.41395 13.4969
78 5A3T MMK 0.0006864 0.48589 14.7239
79 5FWJ MMK 0.003214 0.42924 14.7239
80 5C5T AKG 0.00621 0.41552 15.9509
81 4ZU5 THM 0.00154 0.44671 17.3611
82 2FCU AKG 0.005911 0.423 17.7914
83 3MPB FRU 0.00004168 0.48909 22.0859
84 2ET1 GLV 0.0001098 0.51191 22.6994
85 4YRD 3IT 0.00016 0.50329 25.7669
Pocket No.: 2; Query (leader) PDB : 1LRH; Ligand: NLA; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1lrh.bio2) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1LRH; Ligand: NLA; Similar sites found: 2
This union binding pocket(no: 3) in the query (biounit: 1lrh.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 5N87 N66 0.02236 0.41782 6.13497
2 2Q7D ANP 0.01877 0.41208 20.8589
Pocket No.: 4; Query (leader) PDB : 1LRH; Ligand: NLA; Similar sites found: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1lrh.bio1) has 15 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
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