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Receptor
PDB id Resolution Class Description Source Keywords
1LOJ 1.9 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A METHANOBACTERIAL SM-LIKE ARCHAEAL PROTEIN (SMAP1) BOUND TO URIDINE-5'-MONOPHOSPHATE (UMP) METHANOTHERMOBACTER THERMAUTOTROPHICUS STR. DELTA H BETA BARREL OB-FOLD HEPTAMERIC TOROID TETRADECAMER RNA BINDING PROTEIN TRANSCRIPTION
Ref.: THE OLIGOMERIZATION AND LIGAND-BINDING PROPERTIES OF SM-LIKE ARCHAEAL PROTEINS (SMAPS) PROTEIN SCI. V. 12 832 2003
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
MPD A:7005;
B:7011;
C:7006;
D:7004;
E:7012;
F:7013;
G:7007;
H:7008;
I:7014;
J:7001;
K:7002;
L:7003;
M:7010;
N:7009;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
118.174 C6 H14 O2 C[C@@...
U A:9010;
D:9008;
H:9003;
I:9002;
K:9014;
N:9013;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
submit data
324.181 C9 H13 N2 O9 P C1=CN...
URI B:9007;
C:9011;
E:9006;
F:9009;
G:9012;
J:9001;
L:9005;
M:9004;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
244.201 C9 H12 N2 O6 C1=CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1LOJ 1.9 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF A METHANOBACTERIAL SM-LIKE ARCHAEAL PROTEIN (SMAP1) BOUND TO URIDINE-5'-MONOPHOSPHATE (UMP) METHANOTHERMOBACTER THERMAUTOTROPHICUS STR. DELTA H BETA BARREL OB-FOLD HEPTAMERIC TOROID TETRADECAMER RNA BINDING PROTEIN TRANSCRIPTION
Ref.: THE OLIGOMERIZATION AND LIGAND-BINDING PROPERTIES OF SM-LIKE ARCHAEAL PROTEINS (SMAPS) PROTEIN SCI. V. 12 832 2003
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1LOJ - U C9 H13 N2 O9 P C1=CN(C(=O....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 1LOJ - U C9 H13 N2 O9 P C1=CN(C(=O....
50% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1LNX - URI C9 H12 N2 O6 C1=CN(C(=O....
2 1LOJ - U C9 H13 N2 O9 P C1=CN(C(=O....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: U; Similar ligands found: 121
No: Ligand ECFP6 Tc MDL keys Tc
1 U 1 1
2 U5P 1 1
3 44P 0.790323 0.941176
4 UDP 0.78125 0.984615
5 UTP 0.746269 0.984615
6 2KH 0.735294 0.955224
7 UDP UDP 0.727273 0.953846
8 UPU 0.694444 0.954545
9 UNP 0.690141 0.955224
10 660 0.662338 0.913043
11 URM 0.662338 0.913043
12 URI 0.661017 0.848485
13 GUD 0.641026 0.926471
14 UFM 0.641026 0.926471
15 UPG 0.641026 0.926471
16 GDU 0.641026 0.926471
17 UPF 0.6375 0.875
18 U2F 0.6375 0.875
19 Y6W 0.632911 0.875
20 UDH 0.628205 0.851351
21 UPP 0.628205 0.926471
22 UFG 0.617284 0.875
23 CJB 0.603175 0.80597
24 UDX 0.597561 0.926471
25 UAD 0.597561 0.926471
26 3UC 0.588235 0.875
27 U U 0.585366 0.969697
28 UGB 0.583333 0.940298
29 USQ 0.583333 0.807692
30 UGA 0.583333 0.940298
31 5FU 0.57971 0.927536
32 G3N 0.576471 0.9
33 UA3 0.573529 0.953846
34 U3P 0.573529 0.953846
35 CAR 0.571429 0.941176
36 C 0.571429 0.941176
37 C5P 0.571429 0.941176
38 UDM 0.568182 0.9
39 5BU 0.56338 0.927536
40 U4S 0.557143 0.763889
41 UD1 0.555556 0.913043
42 UD2 0.555556 0.913043
43 CSQ 0.550562 0.863014
44 CSV 0.550562 0.863014
45 U2S 0.541667 0.777778
46 U3S 0.541667 0.763889
47 CNU 0.540541 0.941176
48 S5P 0.535211 0.901408
49 16B 0.534247 0.901408
50 U2P 0.528571 0.939394
51 DU 0.527778 0.911765
52 UMP 0.527778 0.911765
53 HP7 0.526882 0.926471
54 UD7 0.526882 0.913043
55 MJZ 0.521277 0.9
56 UP6 0.521127 0.884058
57 12V 0.515789 0.887324
58 F5G 0.515789 0.913043
59 UD4 0.515789 0.9
60 HWU 0.515789 0.887324
61 F5P 0.515789 0.9
62 BMP 0.513889 0.955224
63 UP5 0.510204 0.84
64 DKX 0.507246 0.732394
65 NUP 0.506849 0.927536
66 U6M 0.506849 0.969697
67 IUG 0.505155 0.797468
68 EPZ 0.5 0.9
69 U1S 0.5 0.76
70 4TC 0.5 0.818182
71 JW5 0.5 0.955224
72 EEB 0.49505 0.887324
73 A U 0.49505 0.815789
74 EPU 0.49505 0.887324
75 UDZ 0.494949 0.84
76 H2U 0.486111 0.911765
77 OMP 0.480519 0.969697
78 6AU 0.480519 0.969697
79 6CN 0.480519 0.941176
80 TKW 0.48 0.927536
81 UMF 0.479452 0.869565
82 UUA 0.477612 0.757576
83 U U U U 0.476744 0.954545
84 BMQ 0.472222 0.939394
85 PUP 0.47191 0.926471
86 G U 0.471154 0.797468
87 5HM 0.467532 0.888889
88 O7E 0.463415 0.941176
89 ICR 0.460526 0.830986
90 UMA 0.458716 0.9
91 O7M 0.45679 0.941176
92 UC5 0.455696 0.885714
93 UTP U U U 0.454545 0.909091
94 CDP 0.45 0.927536
95 2TU 0.449275 0.760563
96 FNU 0.441558 0.876712
97 2QR 0.439655 0.810127
98 DUD 0.4375 0.898551
99 N3E 0.4375 0.743243
100 2OM 0.435897 0.925373
101 U21 0.434783 0.797468
102 U20 0.434783 0.797468
103 U22 0.434783 0.777778
104 DUT 0.433735 0.898551
105 HF4 0.433735 0.927536
106 CTP 0.433735 0.927536
107 8OP 0.428571 0.849315
108 8GM 0.421687 0.853333
109 5GW 0.420455 0.927536
110 U A A U 0.418803 0.853333
111 4RA 0.414634 0.842105
112 DUP 0.411765 0.873239
113 DUN 0.409639 0.873239
114 UD0 0.408 0.831169
115 UVC 0.407895 0.842857
116 UM3 0.407895 0.897059
117 C5G 0.404255 0.875
118 UPA 0.401869 0.828947
119 A U C C 0.401639 0.794872
120 UAG 0.4 0.851351
121 A G U 0.4 0.7875
Ligand no: 2; Ligand: URI; Similar ligands found: 91
No: Ligand ECFP6 Tc MDL keys Tc
1 URI 1 1
2 CJB 0.895833 0.949153
3 DKX 0.709091 0.857143
4 2TU 0.666667 0.888889
5 U5P 0.661017 0.848485
6 U 0.661017 0.848485
7 U4S 0.65 0.833333
8 U3P 0.644068 0.833333
9 UA3 0.644068 0.833333
10 U3S 0.629032 0.833333
11 U2S 0.629032 0.848485
12 UDP 0.625 0.863636
13 44P 0.603175 0.826087
14 UPU 0.6 0.863636
15 UTP 0.597015 0.863636
16 U2P 0.590164 0.848485
17 UDP UDP 0.575758 0.861538
18 2KH 0.565217 0.838235
19 UUA 0.561404 0.864407
20 ZEB 0.553571 0.966102
21 GDU 0.552632 0.865672
22 UPG 0.552632 0.865672
23 660 0.552632 0.852941
24 URM 0.552632 0.852941
25 GUD 0.552632 0.865672
26 UFM 0.552632 0.865672
27 UNP 0.549296 0.838235
28 Y6W 0.545455 0.816901
29 N3E 0.544118 0.835821
30 DHZ 0.534483 0.966102
31 U2F 0.531646 0.816901
32 UPF 0.531646 0.816901
33 UMF 0.53125 0.757143
34 U1S 0.527027 0.8
35 BRD 0.525424 0.915254
36 UVC 0.515625 0.782609
37 UFG 0.5125 0.816901
38 DUR 0.508475 0.903226
39 CTN 0.5 0.919355
40 5UD 0.5 0.920635
41 AR3 0.5 0.919355
42 UPP 0.5 0.838235
43 UDH 0.5 0.794521
44 URD 0.491525 0.881356
45 CTD 0.491525 0.9
46 CSQ 0.488372 0.780822
47 UDM 0.488372 0.84058
48 CSV 0.488372 0.780822
49 3UC 0.488095 0.816901
50 U U 0.481481 0.823529
51 UD1 0.477273 0.852941
52 UD2 0.477273 0.852941
53 UAD 0.47561 0.838235
54 UDX 0.47561 0.838235
55 USQ 0.464286 0.730769
56 UGA 0.464286 0.850746
57 UGB 0.464286 0.850746
58 GPQ 0.460317 0.875
59 G3N 0.458824 0.814286
60 PUP 0.457831 0.811594
61 GPK 0.453125 0.875
62 GPU 0.446154 0.875
63 6SY 0.43662 0.80597
64 0YQ 0.435897 0.835821
65 EPZ 0.428571 0.84058
66 U U U U 0.426829 0.808824
67 UM3 0.426471 0.782609
68 D1M 0.426471 0.903226
69 12V 0.425532 0.828571
70 HWU 0.425532 0.828571
71 D1J 0.424658 0.848485
72 EPU 0.424242 0.828571
73 EEB 0.424242 0.828571
74 A U 0.424242 0.76
75 UTP U U U 0.421687 0.818182
76 UD7 0.419355 0.826087
77 HP7 0.419355 0.838235
78 G U34 0.415842 0.7125
79 G U 0.415842 0.721519
80 MJZ 0.414894 0.814286
81 5AE 0.412698 0.887097
82 F5G 0.410526 0.826087
83 F5P 0.410526 0.814286
84 UD4 0.410526 0.814286
85 DU 0.408451 0.771429
86 UMP 0.408451 0.771429
87 UP5 0.408163 0.76
88 DDU 0.403226 0.793651
89 IUG 0.402062 0.721519
90 4TC 0.4 0.74026
91 DUS 0.4 0.701299
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 60
This union binding pocket(no: 1) in the query (biounit: 1loj.bio3) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1MQ0 BRD None
2 2FR6 CTN None
3 2FR6 URI None
4 5XC5 GTP None
5 1Z0K GTP None
6 3FUU ADN None
7 2BME GNP None
8 1QL9 ZEN None
9 2IMG MLT None
10 2WPB ZZI None
11 1UPT GTP None
12 2JFN GLU None
13 2H04 4UN None
14 4X7G NAP None
15 4A0S NAP 2.29885
16 4EU7 COA 2.29885
17 4WAS COO 3.44828
18 1N9G NAP 3.44828
19 6F92 MVL 3.44828
20 2AJ4 GLA 3.44828
21 5KZD RCJ 3.44828
22 3SBD GNP 4.5977
23 4GE6 B26 4.5977
24 4GLW NMN 4.5977
25 2J9D ADP 4.5977
26 3NCQ ATP 4.5977
27 1KO8 6PG 5.74713
28 1R2Q GNP 5.74713
29 3QBT GNP 6.89655
30 1ZUA TOL 6.89655
31 1ZUA NAP 6.89655
32 1HXD BTN 6.89655
33 3AFH GSU 6.89655
34 4LHW GNP 6.89655
35 5K5Z ANP 6.89655
36 4MOP 2H5 8.04598
37 1Y75 NAG 8.04598
38 4MIG G3F 8.04598
39 2GMH UQ5 8.04598
40 2HJR APR 8.04598
41 3T6E UQ9 9.1954
42 1QFY FAD 9.1954
43 1QFY NAP 9.1954
44 1R37 NAD 10.3448
45 1TLL FMN 10.3448
46 1N7G GDR 10.3448
47 2HHJ DG2 11.4943
48 6FYJ MYR 11.4943
49 1P6O HPY 12.6437
50 5EE5 GTP 12.6437
51 2WTX UDP 13.7931
52 2WTX VDO 13.7931
53 2YPO PHE 13.7931
54 6F90 MVL 14.9425
55 1X1R GDP 18.3908
56 1RPN GDP 20.6897
57 4ZI2 GNP 21.8391
58 2W83 GTP 21.8391
59 4B7X NAP 22.9885
60 2YY8 SAM 22.9885
Pocket No.: 2; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 28
This union binding pocket(no: 2) in the query (biounit: 1loj.bio3) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4PXD 1AL None
2 3A2Q ACA ACA 0.608519
3 4WAS NAP 3.44828
4 5W10 CMP 3.44828
5 1A4R GNH 3.44828
6 4BLW SAH 3.44828
7 4BLW AMP 3.44828
8 3CB2 GDP 4.5977
9 5JFS 6K0 4.5977
10 6APL C5P 5.74713
11 1YB5 NAP 5.74713
12 5G4L NDP 5.74713
13 3ABI NAD 6.89655
14 3KYF 5GP 5GP 8.04598
15 2EWM NAD 8.04598
16 3KAP FMN 10.3448
17 4IY7 KOU 10.3448
18 2FZW NAD 11.4943
19 1UAY ADN 11.4943
20 4NDN SAM 12.6437
21 2XNJ NAP 13.7931
22 3VPC ADP 17.2414
23 1F74 NAY 18.3908
24 5L9V OGA 19.5402
25 2BTO GTP 24.1379
26 1CBF SAH 25.2874
27 1GAR U89 28.7356
28 3RYC GTP 32.1839
Pocket No.: 3; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 16
This union binding pocket(no: 3) in the query (biounit: 1loj.bio3) has 8 residues
No: Leader PDB Ligand Sequence Similarity
1 5C2N NAG None
2 4YMJ 4EJ 2.29885
3 3EJR HN4 3.44828
4 2F9L GDP 3.44828
5 2OGA PGU 4.5977
6 1OE0 TTP 5.74713
7 4IMG NGF 6.89655
8 5W19 9TD 9.1954
9 4IYO 0JO 10.3448
10 4IY7 0JO 10.3448
11 1Q19 APC 13.7931
12 4UUW AMP 19.5402
13 4CTA ATP 19.5402
14 3KDU NKS 19.5402
15 3LF0 ATP 20.6897
16 3BNK FMN 24.1379
Pocket No.: 4; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 37
This union binding pocket(no: 4) in the query (biounit: 1loj.bio3) has 12 residues
No: Leader PDB Ligand Sequence Similarity
1 2FR6 URI None
2 2FR6 CTN None
3 1MQ0 BRD None
4 3FUU ADN None
5 5XC5 GTP None
6 5O74 GDP None
7 1ZJ6 G3D None
8 3A2Q ACA ACA 0.608519
9 4A0S NAP 2.29885
10 1N9G NAP 3.44828
11 2AJ4 GLA 3.44828
12 4O1M NAD 4.5977
13 2DT5 NAD 4.5977
14 4GLW NMN 4.5977
15 3CB2 GDP 4.5977
16 2V1O COA 4.5977
17 4CQM NAP 5.74713
18 3RLF ANP 6.89655
19 3AQ4 GDP 6.89655
20 1NNU NAD 8.04598
21 1NNU TCT 8.04598
22 1V35 NAI 8.04598
23 1L2T ATP 8.04598
24 1JAY NAP 8.04598
25 4YLG GDP 9.1954
26 4Q9N NAI 9.1954
27 1P6O HPY 12.6437
28 3X0Y FMN 12.6437
29 3OJF NDP 13.7931
30 3VCY UD1 16.092
31 3VPC ADP 17.2414
32 1LVL FAD 18.3908
33 4CBU ATP 19.5402
34 1PS9 FMN 20.6897
35 3N5C GDP 21.8391
36 4B7X NAP 22.9885
37 2BTO GTP 24.1379
Pocket No.: 5; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 31
This union binding pocket(no: 5) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3WV8 ATP None
2 1EK0 GNP None
3 3C9U TPP None
4 1QL9 ZEN None
5 2IMG MLT None
6 1G0N NDP None
7 2BME GNP None
8 1UPT GTP None
9 4WAS NAP 3.44828
10 2GOO NDG 3.44828
11 5W10 CMP 3.44828
12 2IV2 2MD 4.5977
13 1YB5 NAP 5.74713
14 6APL C5P 5.74713
15 1R2Q GNP 5.74713
16 4MOP 2H5 8.04598
17 4MIG G3F 8.04598
18 3AHQ FAD 8.04598
19 4LX0 BEF GDP 8.04598
20 1F5N GNP 9.1954
21 3ORF NAD 9.1954
22 4IJP 1EH 10.3448
23 3KAP FMN 10.3448
24 4R2M ANP 10.3448
25 2YPO PHE 13.7931
26 2XNJ NAP 13.7931
27 4X9D U5P 15.493
28 4UUW AMP 19.5402
29 3RUV ANP 20.6897
30 1U3D FAD 31.0345
31 3RYC GTP 32.1839
Pocket No.: 6; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 10
This union binding pocket(no: 6) in the query (biounit: 1loj.bio3) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 2PXX SAH None
2 1O7Q UDP 6.89655
3 1O7Q GAL NAG 6.89655
4 1MDB AMP DBH 6.89655
5 2ZB3 NDP 6.89655
6 4AT0 FAD 8.04598
7 3FPZ AHZ 10.3448
8 1LDN NAD 11.4943
9 5N9X ATP 17.2414
10 5C5H 4YB 17.2414
Pocket No.: 7; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 24
This union binding pocket(no: 7) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1UVC STE None
2 5F2T PLM None
3 2WPB ZZI None
4 1I7L ATP None
5 1XS5 MET None
6 4WAS COO 3.44828
7 5KZD RCJ 3.44828
8 4BLW SAH 3.44828
9 5EK3 5PK 5.74713
10 4IMG NGF 6.89655
11 3QBT GNP 6.89655
12 4LHW GNP 6.89655
13 2GMH UQ5 8.04598
14 2II3 CAO 10.3448
15 5EE5 GTP 12.6437
16 3AD8 NAD 19.5402
17 2CK3 ADP 20.6897
18 4GOJ GNP 21.8391
19 4ZI2 GNP 21.8391
20 2W83 GTP 21.8391
21 4KAX GTP 21.8391
22 3P7N FMN 22.9885
23 1GAR U89 28.7356
24 5LXT 7AK 32.1839
Pocket No.: 8; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 29
This union binding pocket(no: 8) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3WV8 ATP None
2 1Z06 GNP None
3 3C9U TPP None
4 1FK5 OLA None
5 3BF1 ADP None
6 1MWW GLU 2.29885
7 1NF3 GNP 3.44828
8 2GOO NDG 3.44828
9 4MO2 FAD 4.5977
10 2B4Q NAP 5.74713
11 5A89 FMN 5.74713
12 5A89 ADP 5.74713
13 2OHH FMN 5.74713
14 4XOI GTP 6.89655
15 4IP7 FBP 6.89655
16 1KMQ GNP 6.89655
17 3AHQ FAD 8.04598
18 5Z2L NDP 8.04598
19 5K53 STE 8.04598
20 2GJ8 ALF GDP 9.1954
21 2DKN NAI 9.1954
22 3GDN FAD 9.1954
23 1O8B ABF 9.1954
24 6FRN FMN 10.3448
25 5UPK GNP 14.9425
26 3VCY UD1 16.092
27 1ZBQ NAD 17.2414
28 4K81 GTP 18.3908
29 2FNA ADP 24.1379
Pocket No.: 9; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 13
This union binding pocket(no: 9) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 4M52 M52 None
2 1Z0K GTP None
3 5KVS NAP None
4 1YVD GNP None
5 1Z06 GNP None
6 1USF FMN None
7 4ONC 40B None
8 3MAG SAH 3.44828
9 6F92 MVL 3.44828
10 4I6G FAD 11.4943
11 6F90 MVL 14.9425
12 4CTA ATP 19.5402
13 2GKS ADP 25.2874
Pocket No.: 10; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 7
This union binding pocket(no: 10) in the query (biounit: 1loj.bio3) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 3B4Y F42 3.44828
2 2ZB4 5OP 6.89655
3 2ZB4 NAP 6.89655
4 2WG9 OCA 6.89655
5 5ZXD ATP 14.9425
6 3VPB ADP 17.2414
7 5L9B AKG 19.5402
Pocket No.: 11; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 16
This union binding pocket(no: 11) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 5KVS 6XR None
2 5KVS NAP None
3 1YVD GNP None
4 5F2T PLM None
5 2XTZ GSP None
6 4I4Z 2NE 6.89655
7 4LX0 BEF GDP 8.04598
8 4IJP 1EH 10.3448
9 1M7B GTP 12.6437
10 3DOE GTP 13.7931
11 4X9D U5P 15.493
12 2CK3 ADP 20.6897
13 3RUV ANP 20.6897
14 4GOJ GNP 21.8391
15 2GKS ADP 25.2874
16 1U3D FAD 31.0345
Pocket No.: 12; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 14
This union binding pocket(no: 12) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1A4R GNH 3.44828
2 2QTR NXX 3.44828
3 2QZX IVA VAL VAL STA ALA STA 4.5977
4 2JAH NDP 4.5977
5 1KO8 6PG 5.74713
6 4LY9 S6P 5.74713
7 4LY9 1YY 5.74713
8 5G4L NDP 5.74713
9 2ZB3 NDP 6.89655
10 2EWM NAD 8.04598
11 2JAP NDP 8.04598
12 3DR4 G4M 13.7931
13 1F74 NAY 18.3908
14 1CBF SAH 25.2874
Pocket No.: 13; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: 13
This union binding pocket(no: 13) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 1FK5 OLA None
2 1NFQ NAI None
3 3UA1 08Y 3.44828
4 4GE6 B26 4.5977
5 1O8B ABF 9.1954
6 3FPZ AHZ 10.3448
7 2J59 GTP 10.3448
8 1UAY ADN 11.4943
9 3DOE GTP 13.7931
10 1ZBQ NAD 17.2414
11 5N9X ATP 17.2414
12 1X1R GDP 18.3908
13 5LXT GDP 32.1839
Pocket No.: 14; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: 14
This union binding pocket(no: 14) in the query (biounit: 1loj.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3GFB NAD None
2 4XIZ LPP None
3 2DFV NAD None
4 1I7L ATP None
5 1HE1 AF3 4.5977
6 1GSA ADP 6.89655
7 4P8K FAD 8.04598
8 4P8K 38C 8.04598
9 1PJS SAH 8.04598
10 4M5S GLY GLU ARG THR ILE PRO ILE THR ARG GLU 11.4943
11 6DEF GCP 13.7931
12 4RF2 NAP 14.9425
13 1WDT GTP 25.2874
14 1M0S CIT 47.1264
Pocket No.: 15; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 15) in the query (biounit: 1loj.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 16; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 16) in the query (biounit: 1loj.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 17; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 17) in the query (biounit: 1loj.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 18; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 18) in the query (biounit: 1loj.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 19; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 19) in the query (biounit: 1loj.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 20; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 20) in the query (biounit: 1loj.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 21; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 21) in the query (biounit: 1loj.bio2) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 22; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 22) in the query (biounit: 1loj.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 23; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 23) in the query (biounit: 1loj.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 24; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 24) in the query (biounit: 1loj.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 25; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 25) in the query (biounit: 1loj.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 26; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 26) in the query (biounit: 1loj.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 27; Query (leader) PDB : 1LOJ; Ligand: URI; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 27) in the query (biounit: 1loj.bio1) has 8 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 28; Query (leader) PDB : 1LOJ; Ligand: U; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 28) in the query (biounit: 1loj.bio1) has 12 residues
No: Leader PDB Ligand Sequence Similarity
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