Receptor
PDB id Resolution Class Description Source Keywords
1L5Y 2.1 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD SINORHIZOBIUM MELILOTI BERYLLOFLUORIDE BOUND TWO COMPONENT RECEIVER DOMAIN TRANSCRREGULATOR
Ref.: TWO-COMPONENT SIGNALING IN THE AAA + ATPASE DCTD: B MG2+ AND BEF3- SELECTS BETWEEN ALTERNATE DIMERIC ST THE RECEIVER DOMAIN FASEB J. V. 16 1964 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BEF A:660;
B:661;
B:672;
Valid;
Valid;
Valid;
none;
none;
none;
submit data
66.007 Be F3 [Be-]...
BF2 A:662;
A:663;
A:664;
A:665;
A:667;
A:669;
A:670;
A:671;
B:666;
B:668;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
submit data
47.009 Be F2 [Be](...
BF4 A:673;
Valid;
none;
submit data
85.006 Be F4 [Be-2...
GOL B:674;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MG A:701;
B:702;
Part of Protein;
Part of Protein;
none;
none;
submit data
24.305 Mg [Mg+2...
SO4 A:706;
A:707;
B:703;
B:704;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1L5Y 2.1 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MG2+ / BEF3-BOUND RECEIVER DOMAIN OF SINORHIZOBIUM MELILOTI DCTD SINORHIZOBIUM MELILOTI BERYLLOFLUORIDE BOUND TWO COMPONENT RECEIVER DOMAIN TRANSCRREGULATOR
Ref.: TWO-COMPONENT SIGNALING IN THE AAA + ATPASE DCTD: B MG2+ AND BEF3- SELECTS BETWEEN ALTERNATE DIMERIC ST THE RECEIVER DOMAIN FASEB J. V. 16 1964 2002
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 309 families.
1 1L5Y - BF4 Be F4 [Be-2](F)(....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 263 families.
1 1L5Y - BF4 Be F4 [Be-2](F)(....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 221 families.
1 1L5Y - BF4 Be F4 [Be-2](F)(....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BEF; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 BEF 1 1
Ligand no: 2; Ligand: BF4; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 BF4 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1L5Y; Ligand: BEF; Similar sites found with APoc: 8
This union binding pocket(no: 1) in the query (biounit: 1l5y.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4L6C 0BT 7.09677
2 1L7P SEP 7.74194
3 4IF4 BEF 38.0645
4 4IF4 BEF 38.0645
5 4IF4 BEF 38.0645
6 4IF4 BEF 38.0645
7 6BR7 BEF 39.0977
8 6BR7 BEF 39.0977
Pocket No.: 2; Query (leader) PDB : 1L5Y; Ligand: BEF; Similar sites found with APoc: 8
This union binding pocket(no: 2) in the query (biounit: 1l5y.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 4L6C 0BT 7.09677
2 1L7P SEP 7.74194
3 4IF4 BEF 38.0645
4 4IF4 BEF 38.0645
5 4IF4 BEF 38.0645
6 4IF4 BEF 38.0645
7 4IF4 BEF 38.0645
8 6BR7 BEF 39.0977
Pocket No.: 3; Query (leader) PDB : 1L5Y; Ligand: BF4; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1l5y.bio1) has 4 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1L5Y; Ligand: BEF; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1l5y.bio1) has 3 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback