Receptor
PDB id Resolution Class Description Source Keywords
1H2T 2.1 Å NON-ENZYME: TRANSCRIPT_TRANSLATE STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING-COMPLEX (CBC) IN WITH A CAP ANALOGUE M7GPPPG HOMO SAPIENS M7GCAP CAP-BINDING-COMPLEX RNP DOMAIN MIF4G DOMAIN RNA MATURATION RNA EXPORT NUCLEAR PROTEIN RNA-BINDING
Ref.: LARGE-SCALE INDUCED FIT RECOGNITION OF AN M(7)GPPPG ANALOGUE BY THE HUMAN NUCLEAR CAP-BINDING COMPLEX EMBO J. V. 21 5548 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP 7MG Z:1151;
Valid;
none;
Kd ~ 13 nM
800.421 n/a P(=O)...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1H2T 2.1 Å NON-ENZYME: TRANSCRIPT_TRANSLATE STRUCTURE OF THE HUMAN NUCLEAR CAP-BINDING-COMPLEX (CBC) IN WITH A CAP ANALOGUE M7GPPPG HOMO SAPIENS M7GCAP CAP-BINDING-COMPLEX RNP DOMAIN MIF4G DOMAIN RNA MATURATION RNA EXPORT NUCLEAR PROTEIN RNA-BINDING
Ref.: LARGE-SCALE INDUCED FIT RECOGNITION OF AN M(7)GPPPG ANALOGUE BY THE HUMAN NUCLEAR CAP-BINDING COMPLEX EMBO J. V. 21 5548 2002
Members (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 308 families.
1 1H2T Kd ~ 13 nM GDP 7MG n/a n/a
2 1H2U Kd ~ 13 nM GDP 7MG n/a n/a
3 1N52 - GTG C21 H30 N10 O18 P3 C[n+]1cn(c....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 266 families.
1 1H2T Kd ~ 13 nM GDP 7MG n/a n/a
2 1H2U Kd ~ 13 nM GDP 7MG n/a n/a
3 1N52 - GTG C21 H30 N10 O18 P3 C[n+]1cn(c....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 220 families.
1 1H2T Kd ~ 13 nM GDP 7MG n/a n/a
2 1H2U Kd ~ 13 nM GDP 7MG n/a n/a
3 1N52 - GTG C21 H30 N10 O18 P3 C[n+]1cn(c....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GDP 7MG; Similar ligands found: 96
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 7MG 1 1
2 GTG 0.79798 0.974684
3 GTP MG 0.776596 0.948052
4 GDP BEF 0.747368 0.924051
5 GDP ALF 0.71 0.879518
6 GDP AF3 0.71 0.879518
7 ALF 5GP 0.666667 0.879518
8 GDP 0.636364 0.911392
9 G 0.635417 0.923077
10 5GP 0.635417 0.923077
11 GP3 0.626263 0.936709
12 G7M 0.625 0.961538
13 GP2 0.62 0.878049
14 GNH 0.613861 0.9
15 G2P 0.605769 0.878049
16 GTP 0.601942 0.911392
17 GCP 0.596154 0.888889
18 G1R 0.596154 0.9
19 MGP 0.592233 0.949367
20 GSP 0.590476 0.86747
21 GNP 0.590476 0.888889
22 9GM 0.590476 0.888889
23 6G0 0.586538 0.949367
24 GMV 0.586538 0.888889
25 GAV 0.579439 0.878049
26 G2R 0.563636 0.878049
27 G1R G1R 0.5625 0.9375
28 Y9Z 0.552632 0.848837
29 KB7 0.552381 0.819277
30 GDR 0.547826 0.925
31 GFB 0.547826 0.925
32 GTA 0.547009 0.974684
33 PGD O 0.546154 0.822222
34 GPG 0.544643 0.925
35 YGP 0.54386 0.891566
36 GDD 0.53913 0.901235
37 GDC 0.53913 0.901235
38 GKE 0.53913 0.901235
39 GMP 0.536842 0.822785
40 GKD 0.533898 0.901235
41 JB2 0.533898 0.925
42 6CK 0.529915 0.879518
43 G3A 0.529915 0.936709
44 GPD 0.529412 0.891566
45 NGD 0.528455 0.949367
46 MG7 0.526316 0.860759
47 G5P 0.525424 0.936709
48 GDX 0.516667 0.9125
49 I2C FE2 CMO CMO 0.515385 0.842697
50 JB3 0.508065 0.91358
51 G3D 0.504505 0.898734
52 FEG 0.504 0.892857
53 ZGP 0.5 0.882353
54 G4P 0.495575 0.898734
55 CAG 0.492308 0.894118
56 KBD 0.491379 0.841463
57 3GP 0.490385 0.886076
58 KBJ 0.487395 0.811765
59 CG2 0.484375 0.879518
60 M7G A2M G 0.483871 0.885057
61 2MD 0.48062 0.83908
62 U2G 0.480315 0.879518
63 AKW 0.480315 0.926829
64 0O2 0.478632 0.898734
65 MD1 0.477612 0.83908
66 MGD 0.469697 0.83908
67 G C 0.469231 0.91358
68 DBG 0.459854 0.91358
69 TPG 0.459854 0.833333
70 FE9 0.459259 0.789474
71 PGD 0.455882 0.869048
72 AJQ 0.453846 0.926829
73 2GP 0.448598 0.875
74 BGO 0.446154 0.9375
75 GPX 0.440678 0.8625
76 G4M 0.438356 0.872093
77 ADP PO3 0.428571 0.883117
78 ATP MG 0.428571 0.883117
79 GGM 0.425373 0.914634
80 BEF ADP 0.424779 0.860759
81 APC G U 0.42446 0.924051
82 GH3 0.423729 0.8875
83 DGI 0.421053 0.843373
84 G1G 0.42029 0.9625
85 MGQ 0.420168 0.949367
86 P2G 0.414414 0.82716
87 OMC OMU OMG OMG U 0.410596 0.950617
88 MGV 0.409836 0.903614
89 P1G 0.40708 0.817073
90 DGT 0.40678 0.843373
91 DGP 0.405405 0.853659
92 DG 0.405405 0.853659
93 QBQ 0.405172 0.898734
94 IDP 0.403509 0.886076
95 VO4 ADP 0.401709 0.8625
96 4TA 0.40146 0.825581
Similar Ligands (3D)
Ligand no: 1; Ligand: GDP 7MG; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1H2T; Ligand: GDP 7MG; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1h2t.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
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