Receptor
PDB id Resolution Class Description Source Keywords
1GZF 1.95 Å EC: 2.4.2.- STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (WILD-TYPE) IN COMPLEX WITH NAD CLOSTRIDIUM BOTULINUM TRANSFERASE ADP-RIBOSYLTRANSFERASE BACTERIAL TOXIN C3 EXOENZYME
Ref.: NAD BINDING INDUCES CONFORMATIONAL CHANGES IN RHO ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 EXOENZYME J.BIOL.CHEM. V. 277 30950 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ADP C:1253;
D:1247;
Valid;
Valid;
none;
none;
submit data
427.201 C10 H15 N5 O10 P2 c1nc(...
NAD A:1248;
B:1252;
Valid;
Valid;
none;
none;
Kd = 60 uM
663.425 C21 H27 N7 O14 P2 c1cc(...
NIR C:1252;
Valid;
none;
submit data
242.272 C11 H18 N2 O4 C[C@@...
SO4 A:1249;
B:1253;
Invalid;
Invalid;
none;
none;
submit data
96.063 O4 S [O-]S...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1GZF 1.95 Å EC: 2.4.2.- STRUCTURE OF THE CLOSTRIDIUM BOTULINUM C3 EXOENZYME (WILD-TYPE) IN COMPLEX WITH NAD CLOSTRIDIUM BOTULINUM TRANSFERASE ADP-RIBOSYLTRANSFERASE BACTERIAL TOXIN C3 EXOENZYME
Ref.: NAD BINDING INDUCES CONFORMATIONAL CHANGES IN RHO ADP-RIBOSYLATING CLOSTRIDIUM BOTULINUM C3 EXOENZYME J.BIOL.CHEM. V. 277 30950 2002
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 2C8H Kd = 75 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2C8A - NCA C6 H6 N2 O c1cc(cnc1)....
3 1GZF Kd = 60 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 2C8F - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 2C8H Kd = 75 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2C8A - NCA C6 H6 N2 O c1cc(cnc1)....
3 1GZF Kd = 60 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
4 2C8F - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
50% Homology Family (5)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 8 families.
1 1OJZ - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
2 2C8H Kd = 75 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
3 2C8A - NCA C6 H6 N2 O c1cc(cnc1)....
4 1GZF Kd = 60 uM NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
5 2C8F - NAD C21 H27 N7 O14 P2 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: ADP; Similar ligands found: 435
No: Ligand ECFP6 Tc MDL keys Tc
1 ADP 1 1
2 ATP 0.9 1
3 A2D 0.895522 0.971831
4 AQP 0.887324 1
5 5FA 0.887324 1
6 AP5 0.884058 0.971831
7 B4P 0.884058 0.971831
8 BA3 0.869565 0.971831
9 AN2 0.84507 0.985915
10 M33 0.833333 0.958333
11 ACQ 0.826667 0.972222
12 A 0.823529 0.971429
13 AMP 0.823529 0.971429
14 ACP 0.821918 0.972222
15 AR6 0.810811 0.971831
16 APR 0.810811 0.971831
17 ANP 0.802632 0.972222
18 AD9 0.8 0.972222
19 AGS 0.8 0.945946
20 SAP 0.8 0.945946
21 ADX 0.783784 0.873418
22 CA0 0.783784 0.945205
23 TAT 0.779221 0.958904
24 AMP MG 0.774648 0.891892
25 50T 0.773333 0.958333
26 ABM 0.763889 0.917808
27 APC 0.763158 0.958904
28 PRX 0.763158 0.893333
29 ATF 0.759494 0.958904
30 A22 0.753086 0.985915
31 A12 0.743243 0.958904
32 AP2 0.743243 0.958904
33 ADP MG 0.736842 0.905405
34 SRA 0.736111 0.918919
35 ADQ 0.73494 0.945205
36 25L 0.732558 0.985915
37 ADP BEF 0.727273 0.881579
38 BEF ADP 0.727273 0.881579
39 5AL 0.725 0.931507
40 2A5 0.717949 0.918919
41 A1R 0.714286 0.907895
42 AU1 0.714286 0.972222
43 ADP PO3 0.708861 0.943662
44 PAP 0.708861 0.985714
45 ATR 0.708861 0.971429
46 SRP 0.707317 0.906667
47 7D3 0.706667 0.905405
48 25A 0.702381 0.971831
49 ATP MG 0.7 0.905405
50 OAD 0.697674 0.945205
51 RBY 0.6875 0.932432
52 ADV 0.6875 0.932432
53 00A 0.686047 0.883117
54 5SV 0.682353 0.848101
55 8QN 0.682353 0.931507
56 OOB 0.682353 0.931507
57 3OD 0.681818 0.945205
58 BIS 0.681818 0.933333
59 ADP ALF 0.674699 0.87013
60 ALF ADP 0.674699 0.87013
61 AMO 0.674419 0.932432
62 4AD 0.674419 0.92
63 PAJ 0.674419 0.884615
64 GAP 0.670732 0.893333
65 MAP 0.670588 0.945946
66 DLL 0.666667 0.931507
67 ANP MG 0.666667 0.894737
68 VO4 ADP 0.666667 0.931507
69 AHX 0.666667 0.896104
70 ADP VO4 0.666667 0.931507
71 PTJ 0.662921 0.896104
72 3UK 0.659091 0.918919
73 SON 0.658228 0.932432
74 LAD 0.651685 0.860759
75 WAQ 0.651685 0.883117
76 PR8 0.651685 0.85
77 ITT 0.65 0.943662
78 7D4 0.65 0.905405
79 G5P 0.648936 0.921053
80 RAB 0.647059 0.84507
81 ADN 0.647059 0.84507
82 XYA 0.647059 0.84507
83 TXA 0.644444 0.932432
84 1ZZ 0.644444 0.839506
85 ME8 0.644444 0.839506
86 NB8 0.644444 0.896104
87 FYA 0.644444 0.905405
88 6AD 0.642857 0.909091
89 ADP BMA 0.640449 0.918919
90 G3A 0.638298 0.921053
91 DAL AMP 0.632184 0.905405
92 AFH 0.631579 0.884615
93 9SN 0.630435 0.871795
94 GTA 0.625 0.886076
95 YAP 0.623656 0.894737
96 FA5 0.623656 0.906667
97 UP5 0.622449 0.92
98 XAH 0.617021 0.839506
99 AV2 0.616279 0.917808
100 AOC 0.615385 0.821918
101 48N 0.612245 0.896104
102 4UV 0.610526 0.894737
103 TXD 0.606061 0.907895
104 DND 0.606061 0.932432
105 NAX 0.606061 0.873418
106 NXX 0.606061 0.932432
107 NAI 0.606061 0.907895
108 6V0 0.606061 0.896104
109 5N5 0.605634 0.819444
110 5AS 0.604938 0.77907
111 A4P 0.60396 0.843373
112 DAT 0.60241 0.905405
113 A2R 0.602273 0.985915
114 TXE 0.6 0.907895
115 OMR 0.6 0.851852
116 4UU 0.597938 0.894737
117 A A 0.597826 0.944444
118 A4D 0.597222 0.819444
119 5CD 0.597222 0.805556
120 AP0 0.594059 0.896104
121 4TC 0.594059 0.896104
122 A3P 0.592593 0.971429
123 139 0.592233 0.873418
124 T5A 0.592233 0.841463
125 7D5 0.592105 0.878378
126 ATP A A A 0.589474 0.930556
127 LAQ 0.585859 0.839506
128 MYR AMP 0.585106 0.817073
129 YLP 0.58 0.819277
130 UPA 0.578431 0.907895
131 7DD 0.578313 0.985714
132 ADJ 0.576923 0.851852
133 3AM 0.576923 0.929577
134 COD 0.575472 0.811765
135 NAD 0.575472 0.931507
136 3AT 0.574713 0.971831
137 JB6 0.574468 0.883117
138 4UW 0.574257 0.860759
139 EP4 0.573333 0.753247
140 A2P 0.573171 0.957143
141 CNA 0.571429 0.932432
142 TYM 0.568627 0.906667
143 PPS 0.568182 0.873418
144 TYR AMP 0.56701 0.881579
145 DTA 0.565789 0.786667
146 M2T 0.565789 0.734177
147 AR6 AR6 0.565657 0.917808
148 A3D 0.564815 0.918919
149 3DH 0.564103 0.773333
150 G5A 0.563218 0.77907
151 YLB 0.563107 0.819277
152 YLC 0.563107 0.839506
153 AMP DBH 0.561224 0.893333
154 MTA 0.558442 0.773333
155 DTP 0.556818 0.905405
156 AHZ 0.554455 0.817073
157 NA7 0.553191 0.958904
158 IOT 0.552381 0.831325
159 7MD 0.55 0.8625
160 ZAS 0.55 0.766234
161 IMO 0.548781 0.929577
162 YLA 0.54717 0.819277
163 NAE 0.544643 0.894737
164 TAD 0.544554 0.884615
165 A5A 0.544444 0.807229
166 2AM 0.544304 0.943662
167 TSB 0.543478 0.819277
168 6RE 0.54321 0.759494
169 AYB 0.542056 0.809524
170 NAQ 0.539823 0.871795
171 V3L 0.539326 0.971831
172 ARG AMP 0.539216 0.829268
173 AF3 ADP 3PG 0.538462 0.8375
174 SSA 0.538462 0.8
175 LA8 ALF 3PG 0.538462 0.8375
176 ALF ADP 3PG 0.538462 0.8375
177 ZID 0.535088 0.918919
178 LPA AMP 0.533981 0.817073
179 54H 0.532609 0.788235
180 52H 0.532609 0.77907
181 VMS 0.532609 0.788235
182 BTX 0.53211 0.841463
183 J7C 0.53012 0.769231
184 A3N 0.53012 0.786667
185 5X8 0.528736 0.763158
186 BT5 0.527273 0.831325
187 5CA 0.526882 0.8
188 53H 0.526882 0.77907
189 ARU 0.526316 0.860759
190 EAD 0.525862 0.873418
191 RGT 0.525253 0.958904
192 OVE 0.52439 0.905405
193 S4M 0.52381 0.666667
194 7DT 0.522727 0.985714
195 GDP 0.522222 0.92
196 DDS 0.522222 0.878378
197 AVV 0.521277 0.896104
198 NDE 0.521008 0.932432
199 7MC 0.518868 0.841463
200 DSH 0.518072 0.725
201 MAO 0.517647 0.759036
202 LSS 0.515789 0.761364
203 DSZ 0.515789 0.8
204 NSS 0.515789 0.8
205 P5A 0.515464 0.744444
206 DZD 0.513514 0.884615
207 NVA LMS 0.510417 0.761364
208 12D 0.509615 0.785714
209 NAD IBO 0.509091 0.87013
210 M24 0.508772 0.85
211 YLY 0.508772 0.809524
212 P1H 0.508333 0.851852
213 5AD 0.506849 0.746479
214 GJV 0.505882 0.75
215 LEU LMS 0.505155 0.761364
216 G A A A 0.504505 0.871795
217 4TA 0.504505 0.807229
218 NAJ PZO 0.504425 0.848101
219 KAA 0.5 0.752809
220 NDC 0.5 0.871795
221 7D7 0.5 0.743243
222 71V 0.5 0.907895
223 A3G 0.5 0.8
224 128 0.5 0.776471
225 GSU 0.5 0.77907
226 N0B 0.495726 0.819277
227 NJP 0.495495 0.945946
228 ODP 0.495495 0.909091
229 2SA 0.494624 0.932432
230 6C6 0.494505 0.881579
231 SFG 0.494382 0.75
232 0WD 0.491071 0.921053
233 YSA 0.490196 0.77907
234 PO4 PO4 A A A A PO4 0.489796 0.902778
235 6IA 0.48913 0.8375
236 SAM 0.48913 0.690476
237 A7D 0.488636 0.776316
238 6FA 0.488 0.841463
239 FB0 0.487805 0.804598
240 NAJ PYZ 0.487179 0.85
241 IDP 0.483516 0.918919
242 A5D 0.483516 0.786667
243 SA8 0.483516 0.707317
244 MHZ 0.483146 0.697674
245 PGS 0.483146 0.883117
246 D5M 0.482353 0.878378
247 DA 0.482353 0.878378
248 NEC 0.482353 0.746667
249 NIA 0.481928 0.822785
250 Y3J 0.480519 0.726027
251 FAD 0.480315 0.851852
252 FAS 0.480315 0.851852
253 FDA 0.48 0.833333
254 N6P 0.479592 0.915493
255 GGZ 0.479167 0.825
256 SAH 0.478261 0.74359
257 SAI 0.478261 0.734177
258 NPW 0.477477 0.886076
259 NDP 0.477477 0.921053
260 AAM 0.476744 0.971429
261 AMZ 0.47561 0.916667
262 C2R 0.47561 0.90411
263 A A A 0.474747 0.905405
264 GTP 0.473684 0.92
265 U A G G 0.473684 0.883117
266 SMM 0.473684 0.686047
267 TXP 0.473214 0.921053
268 NZQ 0.473214 0.909091
269 A3S 0.47191 0.810811
270 AMP NAD 0.470588 0.881579
271 SFD 0.46875 0.734043
272 AIR 0.468354 0.901408
273 AAT 0.468085 0.707317
274 EEM 0.468085 0.690476
275 Z5A 0.466667 0.77907
276 7C5 0.466667 0.818182
277 J7V 0.466667 0.833333
278 62F 0.465649 0.8625
279 FAY 0.462121 0.8625
280 ETB 0.461538 0.833333
281 DCA 0.461538 0.823529
282 A3T 0.461538 0.821918
283 A6D 0.46 0.722892
284 A U 0.459459 0.87013
285 6K6 0.459184 0.930556
286 GEK 0.459184 0.7375
287 RFL 0.458647 0.821429
288 S7M 0.458333 0.690476
289 NAP 0.458333 0.945205
290 4YB 0.457944 0.761364
291 WSA 0.454545 0.788235
292 TAP 0.454545 0.907895
293 FNK 0.454545 0.804598
294 COA 0.453782 0.823529
295 0T1 0.453782 0.823529
296 101 0.453488 0.878378
297 XNP 0.452174 0.873418
298 NA0 0.45082 0.932432
299 7RP 0.448276 0.928571
300 GP3 0.446809 0.921053
301 TM1 0.446602 0.77381
302 APU 0.446429 0.894737
303 PUA 0.445378 0.884615
304 V1N 0.443396 0.917808
305 7RA 0.443182 0.957747
306 30N 0.442623 0.752688
307 CAO 0.442623 0.795455
308 AMX 0.442623 0.833333
309 COS 0.442623 0.804598
310 ACK 0.44186 0.861111
311 QQY 0.44186 0.815789
312 649 0.441441 0.744444
313 0UM 0.44 0.698795
314 NHD 0.439655 0.905405
315 CMX 0.439024 0.823529
316 SCO 0.439024 0.823529
317 GCP 0.438776 0.896104
318 8BR 0.438202 0.906667
319 GNH 0.4375 0.907895
320 3AD 0.4375 0.805556
321 62X 0.435644 0.666667
322 ACO 0.435484 0.795455
323 FCX 0.435484 0.795455
324 FAM 0.435484 0.804598
325 GNP 0.434343 0.896104
326 NMX 0.433071 0.76087
327 MGP 0.43299 0.884615
328 PLP AAD 0.432203 0.741573
329 26A 0.432099 0.763158
330 HAX 0.432 0.804598
331 K15 0.431373 0.682353
332 DG1 0.430894 0.921053
333 1DG 0.430894 0.921053
334 QQX 0.430233 0.805195
335 2VA 0.430108 0.8
336 S8M 0.43 0.759494
337 2MC 0.429688 0.769231
338 3KK 0.428571 0.804598
339 6G0 0.428571 0.884615
340 FYN 0.428571 0.823529
341 P5F 0.428571 0.823529
342 NAD BBN 0.428571 0.841463
343 U G A 0.427481 0.839506
344 AS 0.426966 0.833333
345 FAI 0.426966 0.916667
346 RMB 0.426966 0.873239
347 1RB 0.425287 0.885714
348 MCD 0.425197 0.804598
349 OXK 0.425197 0.804598
350 COK 0.425197 0.804598
351 CA6 0.425197 0.729167
352 SOP 0.425197 0.804598
353 G1R 0.424242 0.907895
354 CC5 0.423077 0.816901
355 SXZ 0.423077 0.710843
356 F2N 0.422535 0.813953
357 NAD CJ3 0.422222 0.811765
358 ANZ 0.422018 0.8
359 CMC 0.421875 0.804598
360 CO6 0.421875 0.804598
361 1VU 0.421875 0.795455
362 ZDA 0.421053 0.864865
363 GDD 0.420561 0.884615
364 GKE 0.420561 0.884615
365 GDC 0.420561 0.884615
366 NFD 0.420168 0.883117
367 GSP 0.42 0.873418
368 D3Y 0.42 0.789474
369 MC4 0.419847 0.76087
370 3L1 0.419753 0.773333
371 3D1 0.419753 0.773333
372 FA9 0.41958 0.864198
373 5GP 0.419355 0.906667
374 G 0.419355 0.906667
375 KB1 0.419048 0.698795
376 SCD 0.418605 0.823529
377 CAJ 0.418605 0.804598
378 2BA 0.417582 0.915493
379 CMP 0.417582 0.901408
380 SO8 0.416667 0.789474
381 N01 0.416667 0.905405
382 VRT 0.416667 0.769231
383 3HC 0.415385 0.813953
384 A1S 0.415385 0.804598
385 BCO 0.415385 0.804598
386 IVC 0.415385 0.813953
387 MLC 0.415385 0.804598
388 1HE 0.415385 0.786517
389 NMN AMP PO4 0.415254 0.87013
390 2FA 0.414634 0.813333
391 MGO 0.414141 0.860759
392 3NZ 0.413462 0.782051
393 MCA 0.412214 0.795455
394 CAA 0.412214 0.813953
395 YE1 0.412214 0.813953
396 COO 0.412214 0.804598
397 GAV 0.411765 0.884615
398 P2P 0.411111 0.902778
399 JLN 0.411111 0.890411
400 ZZB 0.410256 0.77381
401 CNV FAD 0.410072 0.793103
402 SCA 0.409091 0.804598
403 RP1 0.409091 0.842105
404 103 0.409091 0.837838
405 2CP 0.409091 0.795455
406 SP1 0.409091 0.842105
407 PAX 0.408 0.829268
408 FAD NBT 0.407143 0.75
409 NVA 2AD 0.40625 0.74359
410 COW 0.406015 0.795455
411 BYC 0.406015 0.804598
412 2KQ 0.406015 0.786517
413 COF 0.406015 0.786517
414 3CP 0.406015 0.804598
415 IRC 0.406015 0.813953
416 1GZ 0.406015 0.795455
417 HGG 0.406015 0.804598
418 CA8 0.406015 0.729167
419 G2P 0.405941 0.884615
420 SLU 0.404959 0.770115
421 U A C C 0.404959 0.858974
422 RBZ 0.404494 0.849315
423 1CZ 0.404412 0.795455
424 BCA 0.402985 0.795455
425 FAQ 0.402985 0.804598
426 4CA 0.402985 0.795455
427 MTP 0.402439 0.730769
428 8OD 0.402062 0.945205
429 CO7 0.401515 0.804598
430 DAL FAD PER 0.401408 0.809524
431 G2R 0.4 0.884615
432 HXC 0.4 0.786517
433 ENQ 0.4 0.916667
434 GMV 0.4 0.896104
435 GRA 0.4 0.804598
Ligand no: 2; Ligand: NAD; Similar ligands found: 220
No: Ligand ECFP6 Tc MDL keys Tc
1 A3D 0.872727 0.986111
2 NAD IBO 0.845455 0.933333
3 NHD 0.821429 0.972222
4 NAP 0.811966 0.986111
5 NAJ PYZ 0.803419 0.910256
6 NFD 0.791304 0.946667
7 NXX 0.765766 0.972603
8 DND 0.765766 0.972603
9 ZID 0.737705 0.986111
10 NAQ 0.729508 0.934211
11 NAE 0.721311 0.959459
12 NA0 0.712 0.972603
13 TAP 0.704 0.921053
14 AMP NAD 0.696 0.945946
15 NDE 0.689922 0.972603
16 NAJ 0.683333 0.972222
17 NDC 0.679389 0.934211
18 NDO 0.674603 0.958904
19 N01 0.656 0.972222
20 CNA 0.642276 0.972603
21 NBP 0.621212 0.922078
22 NAD BBN 0.609929 0.876543
23 8ID 0.609756 0.922078
24 NAD CJ3 0.601399 0.845238
25 ADP MG 0.579439 0.918919
26 A2D 0.576923 0.958333
27 ADP 0.575472 0.931507
28 NGD 0.574803 0.922078
29 BEF ADP 0.574074 0.894737
30 ADP BEF 0.574074 0.894737
31 BA3 0.566038 0.958333
32 NAD NDT 0.565789 0.755319
33 M33 0.564815 0.918919
34 ADP PO3 0.563636 0.957747
35 B4P 0.560748 0.958333
36 AP5 0.560748 0.958333
37 ATP MG 0.558559 0.918919
38 AN2 0.555556 0.918919
39 GAP 0.553571 0.932432
40 OOB 0.551724 0.972222
41 CA0 0.550459 0.932432
42 ATP 0.545455 0.931507
43 ACP 0.545455 0.906667
44 NAD TDB 0.544872 0.70297
45 ADP ALF 0.54386 0.883117
46 ALF ADP 0.54386 0.883117
47 5FA 0.540541 0.931507
48 AQP 0.540541 0.931507
49 APR 0.540541 0.931507
50 AR6 0.540541 0.931507
51 ANP MG 0.53913 0.907895
52 VO4 ADP 0.53913 0.945205
53 ADP VO4 0.53913 0.945205
54 AGS 0.535714 0.883117
55 SAP 0.535714 0.883117
56 AD9 0.535714 0.906667
57 WAQ 0.533333 0.896104
58 ABM 0.53271 0.905405
59 00A 0.529412 0.921053
60 DLL 0.529412 0.972222
61 ANP 0.526316 0.906667
62 NJP 0.526316 0.959459
63 ACQ 0.526316 0.906667
64 OAD 0.525 0.932432
65 AMP MG 0.523364 0.905405
66 ADX 0.522523 0.839506
67 5AL 0.521739 0.945205
68 A1R 0.521008 0.871795
69 9SN 0.520325 0.909091
70 AMP 0.518868 0.930556
71 A 0.518868 0.930556
72 50T 0.517857 0.893333
73 ATF 0.517241 0.894737
74 DAL AMP 0.516949 0.945205
75 3OD 0.516393 0.932432
76 1ZZ 0.516393 0.851852
77 SON 0.513514 0.92
78 PRX 0.513274 0.881579
79 SRP 0.512821 0.92
80 ADP BMA 0.512397 0.932432
81 3UK 0.512397 0.958904
82 MYR AMP 0.512195 0.851852
83 NAJ PZO 0.510949 0.909091
84 NMN 0.509434 0.875
85 AMP DBH 0.507937 0.906667
86 A22 0.504202 0.945205
87 FA5 0.504 0.945946
88 ATP A A A 0.504 0.971831
89 TYR AMP 0.5 0.945946
90 8QN 0.5 0.945205
91 NAX 0.496183 0.886076
92 PR8 0.495935 0.8625
93 PAJ 0.495868 0.873418
94 4AD 0.495868 0.933333
95 AMO 0.495868 0.92
96 ADQ 0.495868 0.932432
97 A12 0.495495 0.894737
98 AP2 0.495495 0.894737
99 ALF ADP 3PG 0.492424 0.873418
100 LA8 ALF 3PG 0.492424 0.873418
101 AHZ 0.492308 0.851852
102 YAP 0.492063 0.933333
103 FYA 0.491935 0.918919
104 AHX 0.491803 0.884615
105 4UU 0.488372 0.933333
106 5SV 0.487603 0.8375
107 TAT 0.487179 0.894737
108 APC 0.486957 0.894737
109 SRA 0.486239 0.881579
110 NAI 0.484848 0.921053
111 6V0 0.484848 0.909091
112 GTA 0.484615 0.898734
113 A A 0.483871 0.958333
114 LAD 0.483871 0.873418
115 AU1 0.482456 0.906667
116 TXE 0.481203 0.921053
117 AF3 ADP 3PG 0.481203 0.873418
118 OMR 0.481203 0.841463
119 LAQ 0.480916 0.851852
120 G3A 0.48062 0.909091
121 TXA 0.48 0.92
122 NB8 0.48 0.884615
123 ME8 0.48 0.851852
124 BIS 0.48 0.871795
125 PTJ 0.48 0.884615
126 139 0.477941 0.886076
127 LPA AMP 0.477273 0.851852
128 AR6 AR6 0.476923 0.958333
129 G5P 0.476923 0.909091
130 AFH 0.476923 0.873418
131 25L 0.47619 0.945205
132 25A 0.47541 0.958333
133 DZD 0.47482 0.897436
134 TXD 0.473684 0.921053
135 4UV 0.472868 0.933333
136 TYM 0.470149 0.945946
137 ADV 0.470085 0.894737
138 RBY 0.470085 0.894737
139 ARG AMP 0.469697 0.841463
140 4TA 0.467626 0.864198
141 48N 0.466165 0.884615
142 XAH 0.465116 0.851852
143 4UW 0.462687 0.897436
144 M24 0.461538 0.886076
145 IOT 0.459854 0.821429
146 T5A 0.456522 0.853659
147 EAD 0.455782 0.886076
148 MAP 0.455285 0.883117
149 BT5 0.453901 0.821429
150 A4P 0.452555 0.833333
151 UP5 0.451852 0.933333
152 PAP 0.445378 0.917808
153 AP0 0.445255 0.884615
154 4TC 0.445255 0.909091
155 YLP 0.444444 0.831325
156 P1H 0.443709 0.864198
157 AOC 0.442478 0.810811
158 Z5A 0.439189 0.833333
159 2A5 0.436975 0.857143
160 G A A A 0.43662 0.909091
161 COD 0.43662 0.802326
162 ADJ 0.435714 0.841463
163 YLC 0.434783 0.851852
164 YLB 0.434783 0.831325
165 U A G G 0.433566 0.921053
166 ATR 0.433333 0.90411
167 7MD 0.432836 0.851852
168 G5A 0.429752 0.790698
169 PO4 PO4 A A A A PO4 0.429688 0.943662
170 TAD 0.42963 0.873418
171 5AS 0.42735 0.770115
172 BTX 0.426573 0.831325
173 YLA 0.425532 0.831325
174 DSZ 0.425197 0.790698
175 NCN 0.424779 0.805556
176 UPA 0.42446 0.921053
177 VMS 0.424 0.8
178 54H 0.424 0.8
179 N0B 0.422819 0.853659
180 6AD 0.422764 0.85
181 AYB 0.422535 0.821429
182 7D3 0.422414 0.844156
183 YLY 0.421769 0.821429
184 TSB 0.420635 0.809524
185 ODP 0.41958 0.922078
186 AV2 0.419355 0.855263
187 FB0 0.419355 0.775281
188 A5A 0.419355 0.819277
189 NNR 0.419048 0.739726
190 A A A 0.418605 0.918919
191 LEU LMS 0.418605 0.793103
192 649 0.417266 0.775281
193 NMN AMP PO4 0.416667 0.933333
194 SSA 0.416 0.790698
195 P5A 0.415385 0.755556
196 LSS 0.414062 0.772727
197 A2R 0.412698 0.918919
198 52H 0.412698 0.790698
199 JB6 0.412214 0.896104
200 5N5 0.411215 0.783784
201 YSA 0.410448 0.811765
202 5CA 0.409449 0.790698
203 53H 0.409449 0.790698
204 ITT 0.408333 0.878378
205 7D4 0.408333 0.844156
206 NA7 0.407692 0.894737
207 5CD 0.407407 0.794521
208 0WD 0.406897 0.909091
209 A3P 0.40678 0.930556
210 AVV 0.40625 0.860759
211 RAB 0.40566 0.808219
212 ADN 0.40566 0.808219
213 XYA 0.40566 0.808219
214 FDA 0.405063 0.823529
215 GSU 0.40458 0.790698
216 7MC 0.404255 0.831325
217 NSS 0.403101 0.811765
218 6FA 0.402516 0.853659
219 NVA LMS 0.4 0.793103
220 PPS 0.4 0.817073
Ligand no: 3; Ligand: NIR; Similar ligands found: 1
No: Ligand ECFP6 Tc MDL keys Tc
1 NIR 1 1
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1GZF; Ligand: ADP; Similar sites found: 37
This union binding pocket(no: 1) in the query (biounit: 1gzf.bio3) has 20 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1SBR VIB 0.01474 0.41043 None
2 1H5R THM 0.01447 0.40223 1.4218
3 4NYT PC 0.000846 0.41419 2.36967
4 4LOC OXM 0.02769 0.40454 2.36967
5 2F6U CIT 0.02165 0.40193 2.36967
6 4F0E 0RU 0.0001625 0.42964 2.5
7 5MX4 HPA 0.01564 0.41188 2.8436
8 3QPB URA 0.02152 0.40742 2.8436
9 3LGS ADE 0.01832 0.40839 3.79147
10 5LYH 7B8 0.0003593 0.48024 4.14508
11 4GV4 MEJ 0.0001694 0.47213 4.2654
12 3KJD 78P 0.003522 0.4223 4.73934
13 3IT7 TLA 0.02259 0.41342 4.94506
14 4Z9D NAD 0.0001422 0.4802 5.14286
15 3I7V B4P 0.0007296 0.4448 5.22388
16 4J3L AJ5 0.0003964 0.45605 5.2381
17 1DTP APU 0.001902 0.413 5.78947
18 3Q9O NAD 0.000139 0.45082 6.16114
19 2P4T NAP 0.01223 0.40574 6.45161
20 5KGS 6SR 0.02905 0.40329 6.63507
21 2RCU BUJ 0.04157 0.40161 6.63507
22 3E7S AT2 0.01814 0.41081 7.109
23 3KL3 GCU 0.01881 0.41573 9.00474
24 3ESS 18N 0.00004249 0.5476 9.95261
25 1QH8 HCA 0.02109 0.4008 9.95261
26 4MSG 2C6 0.001058 0.46255 12.7962
27 2HBL AMP 0.02605 0.41003 12.7962
28 2A5F NAD 0.00005439 0.50538 12.9534
29 3B82 NAD 0.00005781 0.50411 15.942
30 1XK9 P34 0.00004369 0.47081 16.1137
31 5EWK P34 0.00003627 0.43546 16.5
32 1OG1 TAD 0.000003024 0.51581 17.5355
33 4YC0 5OF 0.000002865 0.56022 19.4313
34 4UI8 IY5 0.0002902 0.45337 22.9167
35 5H04 NAI 0.000008902 0.5198 42.654
36 4H03 NAD 0.0000007643 0.58191 44.0758
37 2WN6 NDP 0.0000029 0.56346 45.4976
Pocket No.: 2; Query (leader) PDB : 1GZF; Ligand: NIR; Similar sites found: 52
This union binding pocket(no: 2) in the query (biounit: 1gzf.bio3) has 14 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1SBR VIB 0.006297 0.41477 None
2 5NB7 8NQ 0.02934 0.40183 None
3 5IXG OTP 0.03426 0.421 1.18343
4 1J17 ZEN 0.01999 0.40177 1.4218
5 5LX6 78P 0.001093 0.45165 1.57068
6 2J9D AMP 0.01709 0.40716 1.68067
7 4TXJ THM 0.0183 0.42216 2.36967
8 5IXJ THR 0.04022 0.41197 2.36967
9 4F0E 0RU 0.01116 0.40269 2.5
10 5WB6 9ZM 0.005422 0.44617 2.8436
11 3UOY FAD 0.03177 0.43561 2.8436
12 3UOY NAP 0.03177 0.43561 2.8436
13 1R37 NAD 0.02948 0.41548 2.8436
14 5MX4 HPA 0.008349 0.41232 2.8436
15 3QPB URA 0.0114 0.40832 2.8436
16 4WKB TDI 0.01008 0.42429 3.31754
17 1VJY 460 0.02351 0.41752 3.31754
18 2O4C NAD 0.02642 0.41478 3.31754
19 3LGS ADE 0.01135 0.4181 3.79147
20 4TWP AXI 0.04134 0.41479 3.79147
21 5LYH 7B8 0.006826 0.44627 4.14508
22 1PNO NAP 0.03688 0.40582 4.44444
23 3KJD 78P 0.0008205 0.48219 4.73934
24 4Z9D NAD 0.0005246 0.48815 5.14286
25 1M15 ADP 0.03385 0.41116 5.21327
26 1M15 ARG 0.03385 0.41116 5.21327
27 5LKC FUC GLA A2G 0.01114 0.40132 5.21327
28 4QAR ADE 0.01866 0.40126 5.47264
29 1SL3 170 0.01243 0.42125 5.6872
30 5HES 032 0.02783 0.40147 5.6872
31 2BOS GLA GAL 0.01785 0.40209 5.88235
32 2XYA 7L4 0.01721 0.40987 6.04396
33 5W4W 9WG 0.02778 0.40457 6.63507
34 3E7S AT2 0.009226 0.41264 7.109
35 3KL3 GCU 0.01172 0.41573 9.00474
36 3KVY URA 0.007739 0.40152 9.47867
37 3ESS 18N 0.0001087 0.50826 9.95261
38 5L2Z 70C 0.0159 0.43004 9.95261
39 4BMX ADE 0.01421 0.41311 10.9005
40 1O94 AMP 0.01236 0.4162 12.3223
41 4MSG 2C6 0.004838 0.45792 12.7962
42 2A5F NAD 0.0002055 0.44352 12.9534
43 4PAB THG 0.01174 0.41545 13.2701
44 3B82 NAD 0.0005637 0.49249 15.942
45 5EWK P34 0.00002073 0.51969 16.5
46 4J75 TYM 0.0409 0.40101 16.5877
47 1OG1 TAD 0.00002104 0.43326 17.5355
48 4YC0 5OF 0.00001269 0.5755 19.4313
49 3UTU 1TS 0.01613 0.4286 22.2222
50 5H04 NAI 0.0000802 0.52226 42.654
51 4H03 NAD 0.000009505 0.48041 44.0758
52 2WN6 NDP 0.00002183 0.47828 45.4976
Pocket No.: 3; Query (leader) PDB : 1GZF; Ligand: NAD; Similar sites found: 38
This union binding pocket(no: 3) in the query (biounit: 1gzf.bio1) has 22 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 1SBR VIB 0.01868 0.40878 None
2 4NYT PC 0.0004114 0.45785 2.36967
3 4F0E 0RU 0.0001856 0.41024 2.5
4 1VJ7 GPX 0.006904 0.42752 2.8436
5 5MX4 HPA 0.01617 0.41373 2.8436
6 3QPB URA 0.02033 0.40784 2.8436
7 1KKR 2AS 0.01722 0.41218 3.31754
8 5D3X 4IP 0.02436 0.408 3.79147
9 3LGS ADE 0.02523 0.40411 3.79147
10 5LYH 7B8 0.0006219 0.46054 4.14508
11 4GV4 MEJ 0.0002002 0.47365 4.2654
12 3KJD 78P 0.006066 0.40489 4.73934
13 3IT7 TLA 0.02162 0.42148 4.94506
14 4Z9D NAD 0.0001205 0.47339 5.14286
15 5LKC FUC GLA A2G 0.02272 0.4029 5.21327
16 3I7V B4P 0.002299 0.40641 5.22388
17 4J3L AJ5 0.0004511 0.45807 5.2381
18 1DTP APU 0.00502 0.40485 5.78947
19 2BOS GLA GAL GLC 0.03061 0.40208 5.88235
20 2BOS GLA GAL 0.03096 0.4009 5.88235
21 3Q9O NAD 0.0002888 0.44969 6.16114
22 1NW4 IMH 0.01492 0.40936 6.16114
23 2P4T NAP 0.01672 0.4028 6.45161
24 4DSU BZI 0.02334 0.40343 6.87831
25 3E7S AT2 0.02064 0.41123 7.109
26 3ESS 18N 0.00005222 0.54762 9.95261
27 4MSG 2C6 0.001693 0.44511 12.7962
28 2HBL AMP 0.02504 0.41732 12.7962
29 2A5F NAD 0.0000433 0.51493 12.9534
30 3B82 NAD 0.0001397 0.47704 15.942
31 1XK9 P34 0.00009423 0.46965 16.1137
32 5EWK P34 0.000002893 0.4505 16.5
33 1OG1 TAD 0.0000004619 0.56383 17.5355
34 4YC0 5OF 0.000002231 0.55188 19.4313
35 4UI8 IY5 0.0003474 0.4584 22.9167
36 5H04 NAI 0.000001103 0.53375 42.654
37 4H03 NAD 0.0000005696 0.59367 44.0758
38 2WN6 NDP 0.000003685 0.56433 45.4976
Pocket No.: 4; Query (leader) PDB : 1GZF; Ligand: ADP; Similar sites found: 8
This union binding pocket(no: 4) in the query (biounit: 1gzf.bio4) has 19 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4Q3F TLA 0.02686 0.40224 None
2 5LX6 78P 0.001239 0.40267 1.57068
3 2CYB TYR 0.02086 0.40041 2.8436
4 4BUY F37 0.0001079 0.40454 5.21327
5 4GK9 MAN BMA MAN MAN MAN 0.01701 0.40619 6.63507
6 2XG5 EC5 0.01468 0.41852 7.58294
7 2XG5 EC2 0.01468 0.41852 7.58294
8 1O6B ADP 0.0068 0.42053 7.69231
Pocket No.: 5; Query (leader) PDB : 1GZF; Ligand: NAD; Similar sites found: 18
This union binding pocket(no: 5) in the query (biounit: 1gzf.bio2) has 23 residues
No: Leader PDB Ligand P-value (APoc) PS_Score (APoc) Sequence Similarity
1 4JCA CIT 0.01233 0.43594 None
2 4LOC OXM 0.03384 0.40551 2.36967
3 2F6U CIT 0.02514 0.40376 2.36967
4 4RDN 6MD 0.03085 0.40185 2.39521
5 1U25 IHS 0.03331 0.40732 2.8436
6 2QQC AG2 0.02987 0.40269 3.77358
7 1EFY BZC 0.00707 0.40361 5.21327
8 1N13 AG2 0.02758 0.40448 5.76923
9 2XYA 7L4 0.03375 0.41246 6.04396
10 3G2Y GF4 0.03358 0.41047 6.16114
11 3WXL ADP 0.03309 0.40657 6.63507
12 2W3L DRO 0.03026 0.40103 6.94444
13 3KL3 GCU 0.02628 0.40006 9.00474
14 1VKF CIT 0.03583 0.40077 9.57447
15 4NOS ITU 0.02354 0.40108 13.7441
16 4K30 NLG 0.01867 0.40214 13.75
17 4URG C2E 0.01473 0.41775 14.9701
18 1PIG BGC 0.01413 0.41061 16.5877
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