Receptor
PDB id Resolution Class Description Source Keywords
1GX4 1.46 Å EC: 2.4.1.151 ALPHA-,1,3 GALACTOSYLTRANSFERASE - N-ACETYL LACTOSAMINE COMP BOS TAURUS GALACTOSYLTRANSFERASE BLOOD GROUP SUGARS LACTOSE N-ACETYLLACTOSAMINE TRANSFERASE GLYCOSYLTRANSFERASE
Ref.: STRUCTURAL BASIS OF ORDERED BINDING OF DONOR AND AC SUBSTRATES TO THE RETAINING GLYCOSYLTRANSFERASE, AL GALACTOSYLTRANSFERASE J.BIOL.CHEM. V. 277 28310 2002
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:406;
A:405;
A:407;
B:405;
Invalid;
Invalid;
Invalid;
Invalid;
none;
none;
none;
none;
submit data
92.094 C3 H8 O3 C(C(C...
MN A:402;
B:402;
Part of Protein;
Part of Protein;
none;
none;
submit data
54.938 Mn [Mn+2...
UDP A:401;
B:401;
Valid;
Valid;
none;
none;
Kd = 0.053 mM
404.161 C9 H14 N2 O12 P2 C1=CN...
NAG GAL D:1;
C:1;
Valid;
Valid;
none;
none;
Kd = 0.58 mM
383.35 n/a O=C(N...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1O7Q 1.3 Å EC: 2.4.1.151 ROLES OF INDIVIDUAL RESIDUES OF ALPHA-1,3 GALACTOSYLTRANSFER SUBSTRATE BINDING AND CATALYSIS BOS TAURUS TRANSFERASE ALPHA-1 3-GALACTOSYLTRANSFERASE-UDP COMPLEX GLYCOSYLTRANSFERASE GLYCOPROTEIN TRANSMEMBRANE NUCLEOTIDPROTEIN XENOTRANSPLANTATION
Ref.: ROLES OF INDIVIDUAL ENZYME-SUBSTRATE INTERACTIONS B ALPHA-1,3-GALACTOSYLTRANSFERASE IN CATALYSIS AND SPECIFICITY. BIOCHEMISTRY V. 42 13512 2003
Members (22)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2JCK - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1GWV Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
3 1O7Q Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
4 2VS4 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
5 1GX4 Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
6 5NRE - BGC GAL n/a n/a
7 5NRB - BGC GAL n/a n/a
8 2VFZ Ki = 245 uM UPF C15 H23 F N2 O16 P2 C1=CN(C(=O....
9 1GX0 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
10 1O7O Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 5NRD - BGC GAL n/a n/a
12 1VZU - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
13 2VS5 - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
14 2WGZ - GAL NPO n/a n/a
15 2JCJ - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
16 1VZT Kd ~ 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
17 2VS3 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
18 1VZX - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
19 1G93 - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
20 1K4V - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
21 1G8O - U5P C9 H13 N2 O9 P C1=CN(C(=O....
22 1GWW Kd = 0.258 mM UDP GLC n/a n/a
70% Homology Family (22)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2JCK - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1GWV Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
3 1O7Q Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
4 2VS4 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
5 1GX4 Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
6 5NRE - BGC GAL n/a n/a
7 5NRB - BGC GAL n/a n/a
8 2VFZ Ki = 245 uM UPF C15 H23 F N2 O16 P2 C1=CN(C(=O....
9 1GX0 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
10 1O7O Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 5NRD - BGC GAL n/a n/a
12 1VZU - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
13 2VS5 - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
14 2WGZ - GAL NPO n/a n/a
15 2JCJ - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
16 1VZT Kd ~ 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
17 2VS3 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
18 1VZX - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
19 1G93 - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
20 1K4V - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
21 1G8O - U5P C9 H13 N2 O9 P C1=CN(C(=O....
22 1GWW Kd = 0.258 mM UDP GLC n/a n/a
50% Homology Family (119)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1 families.
1 2JCK - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
2 1GWV Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
3 1O7Q Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
4 2VS4 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
5 1GX4 Kd = 0.053 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
6 5NRE - BGC GAL n/a n/a
7 5NRB - BGC GAL n/a n/a
8 2VFZ Ki = 245 uM UPF C15 H23 F N2 O16 P2 C1=CN(C(=O....
9 1GX0 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
10 1O7O Kd = 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
11 5NRD - BGC GAL n/a n/a
12 1VZU - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
13 2VS5 - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
14 2WGZ - GAL NPO n/a n/a
15 2JCJ - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
16 1VZT Kd ~ 0.032 mM UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
17 2VS3 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
18 1VZX - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
19 1G93 - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
20 1K4V - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
21 1G8O - U5P C9 H13 N2 O9 P C1=CN(C(=O....
22 1GWW Kd = 0.258 mM UDP GLC n/a n/a
23 1R7X - AIG FUC n/a n/a
24 1WT1 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
25 2RJ6 - BHE C20 H38 O10 CCCCCCCCO[....
26 1ZI4 - NAG GAL FUC n/a n/a
27 1LZJ - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
28 3SX8 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
29 1R7Y - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
30 1R7T - DLG FUC n/a n/a
31 2RJ0 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
32 1ZI5 - NAG GAL FUC n/a n/a
33 5C3D - URM C16 H26 N2 O16 P2 C1=CN(C(=O....
34 3SX3 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
35 1R82 - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
36 4FRO - GAL C6 H12 O6 C([C@@H]1[....
37 4FRM - GAL C6 H12 O6 C([C@@H]1[....
38 5C4B - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
39 1ZJ0 - GLC GAL n/a n/a
40 5C38 - URM C16 H26 N2 O16 P2 C1=CN(C(=O....
41 5C47 - DA8 C20 H38 O9 CCCCCCCCO[....
42 5C48 - URM C16 H26 N2 O16 P2 C1=CN(C(=O....
43 4FRL - GAL C6 H12 O6 C([C@@H]1[....
44 3SXB - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
45 1ZJO - DR4 C16 H30 O8 COC(=O)CCC....
46 2RJ5 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
47 2O1H - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
48 1R7V - AIG FUC n/a n/a
49 5C1H - DA8 C20 H38 O9 CCCCCCCCO[....
50 4FQW - GAL C6 H12 O6 C([C@@H]1[....
51 3IOJ - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
52 1ZJ1 - NDG GAL n/a n/a
53 5C3B - URM C16 H26 N2 O16 P2 C1=CN(C(=O....
54 3V0L Ki = 3 uM 2GW C21 H28 N2 O17 P2 c1ccc(cc1)....
55 2A8W - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
56 2RJ7 - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
57 3SXD - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
58 2A8U - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
59 5C4F - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
60 4FRA - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
61 5C1G - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
62 3V0P - BHE C20 H38 O10 CCCCCCCCO[....
63 5C4C - DA8 C20 H38 O9 CCCCCCCCO[....
64 4FRD - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
65 1ZIZ - GAL C6 H12 O6 C([C@@H]1[....
66 3I0F - U C9 H13 N2 O9 P C1=CN(C(=O....
67 4FRE - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
68 3SXA - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
69 1ZJP - DR4 C16 H30 O8 COC(=O)CCC....
70 5C49 - 4YA C18 H34 O10 CCCCCCO[C@....
71 5C3A - URM C16 H26 N2 O16 P2 C1=CN(C(=O....
72 5C4E - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
73 3ZGG - IUG C22 H30 N3 O19 P2 c1ccc(c(c1....
74 3I0I - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
75 1WT2 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
76 4GBP - GAL C6 H12 O6 C([C@@H]1[....
77 3V0Q - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
78 3I0G - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
79 1ZI3 - NDG GAL n/a n/a
80 1ZHJ - GAL C6 H12 O6 C([C@@H]1[....
81 4FRQ - GAL C6 H12 O6 C([C@@H]1[....
82 3I0L - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
83 5C4D - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
84 3ZGF - IUG C22 H30 N3 O19 P2 c1ccc(c(c1....
85 5C8R - UPG C15 H24 N2 O17 P2 C1=CN(C(=O....
86 3IOI Ki = 0.53 uM 1GW C20 H26 N2 O18 P2 S c1cc(sc1C=....
87 3SXG - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
88 3I0J - BHG FUC n/a n/a
89 3SX5 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
90 3SXC - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
91 3V0M - 5GW C15 H18 N2 O12 P2 c1ccc(cc1)....
92 4FRP - GAL C6 H12 O6 C([C@@H]1[....
93 4FRB - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
94 3I0D - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
95 5TJN - HSH GLA FUC n/a n/a
96 1R80 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
97 2RJ9 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
98 3I0K - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
99 2RJ1 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
100 4FRH - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
101 2RJ4 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
102 3I0E - BHG FUC n/a n/a
103 5C1L - GDU C15 H24 N2 O17 P2 C1=CN(C(=O....
104 2RJ8 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
105 1R7U - DLG FUC n/a n/a
106 2RIX - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
107 5TJO - HSH GLA FUC n/a n/a
108 1ZJ3 - NAG GAL FUC n/a n/a
109 5BXC - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
110 5TJL - HSH A2G FUC n/a n/a
111 1LZI - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
112 2RIY - BHE C20 H38 O10 CCCCCCCCO[....
113 3SXE - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
114 3SX7 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
115 5C36 - DA8 C20 H38 O9 CCCCCCCCO[....
116 5TJK - HSH A2G FUC n/a n/a
117 1ZJ2 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
118 1WT3 - UDP C9 H14 N2 O12 P2 C1=CN(C(=O....
119 1R81 - UD2 C17 H27 N3 O17 P2 CC(=O)N[C@....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: UDP; Similar ligands found: 123
No: Ligand ECFP6 Tc MDL keys Tc
1 UDP 1 1
2 UTP 0.892308 1
3 U5F 0.878788 1
4 UNP 0.8 0.970149
5 U5P 0.78125 0.984615
6 U 0.78125 0.984615
7 UPU 0.72973 0.940298
8 2KH 0.722222 0.970149
9 44P 0.720588 0.955882
10 UFM 0.717949 0.941176
11 URM 0.717949 0.927536
12 660 0.717949 0.927536
13 UPG 0.717949 0.941176
14 GDU 0.717949 0.941176
15 UDP UDP 0.714286 0.939394
16 UDH 0.705128 0.864865
17 UPP 0.705128 0.941176
18 UFG 0.691358 0.888889
19 U2F 0.691358 0.888889
20 UPF 0.691358 0.888889
21 AWU 0.6875 0.941176
22 UAD 0.670732 0.941176
23 UDX 0.670732 0.941176
24 3UC 0.658824 0.888889
25 UGA 0.654762 0.955224
26 UGB 0.654762 0.955224
27 USQ 0.654762 0.820513
28 G3N 0.647059 0.914286
29 UGF 0.647059 0.901408
30 UDM 0.636364 0.914286
31 URI 0.625 0.863636
32 UD1 0.622222 0.927536
33 UD2 0.622222 0.927536
34 UDP GAL 0.611765 0.913043
35 Y6W 0.607143 0.888889
36 CDP 0.605263 0.942029
37 HP7 0.591398 0.941176
38 UD7 0.591398 0.927536
39 MJZ 0.585106 0.914286
40 IUG 0.583333 0.810127
41 HWU 0.578947 0.901408
42 UD4 0.578947 0.914286
43 12V 0.578947 0.901408
44 F5G 0.578947 0.927536
45 F5P 0.578947 0.914286
46 CJB 0.573529 0.820895
47 UDZ 0.571429 0.853333
48 DUD 0.571429 0.913043
49 UP5 0.571429 0.853333
50 EPZ 0.56 0.914286
51 5GW 0.559524 0.942029
52 EEB 0.554455 0.901408
53 EPU 0.554455 0.901408
54 UA3 0.547945 0.939394
55 U3P 0.547945 0.939394
56 4TC 0.544554 0.831169
57 HF4 0.54321 0.942029
58 CTP 0.54321 0.942029
59 BUP 0.536585 0.928571
60 CSV 0.531915 0.851351
61 CSQ 0.531915 0.851351
62 DUT 0.52439 0.913043
63 4GW 0.516484 0.915493
64 UMA 0.513761 0.914286
65 U4S 0.513158 0.753425
66 U2P 0.506667 0.954545
67 U3S 0.5 0.753425
68 U2S 0.5 0.767123
69 FZK 0.494253 0.777778
70 PUP 0.48913 0.913043
71 U21 0.486957 0.810127
72 U20 0.486957 0.810127
73 U22 0.486957 0.790123
74 DKX 0.486486 0.746479
75 U1S 0.482759 0.75
76 0RC 0.482759 0.864865
77 2QR 0.478632 0.822785
78 5FU 0.474359 0.914286
79 LSU 0.472527 0.738095
80 8OD 0.47191 0.851351
81 C5G 0.468085 0.888889
82 7XL 0.465909 0.888889
83 UMF 0.461538 0.857143
84 G8D 0.460674 0.855263
85 2TM 0.45977 0.902778
86 UTP U U U 0.456522 0.895522
87 YSU 0.453608 0.746988
88 2TU 0.452055 0.774648
89 4RA 0.451613 0.855263
90 C2G 0.450549 0.901408
91 DU 0.45 0.898551
92 CAR 0.45 0.927536
93 UMP 0.45 0.898551
94 C5P 0.45 0.927536
95 C 0.45 0.927536
96 UAG 0.448 0.864865
97 CDC 0.446809 0.777778
98 5BU 0.444444 0.914286
99 UD0 0.444444 0.844156
100 N3E 0.440476 0.733333
101 UC5 0.440476 0.9
102 UUA 0.438356 0.772727
103 DUP 0.431818 0.887324
104 2GW 0.431373 0.901408
105 M7G 0.430108 0.780488
106 CNU 0.428571 0.927536
107 CDM 0.427083 0.842105
108 H6Y 0.425532 0.851351
109 16B 0.421687 0.888889
110 S5P 0.419753 0.915493
111 8GT 0.419355 0.855263
112 CDP MG 0.418605 0.885714
113 CXY 0.418367 0.888889
114 UPA 0.418182 0.842105
115 U2G 0.410714 0.822785
116 UML 0.408759 0.810127
117 UP6 0.407407 0.871429
118 M7M 0.40625 0.771084
119 1GW 0.40367 0.864865
120 BMP 0.402439 0.970149
121 APU 0.401786 0.828947
122 PMP UD1 0.401575 0.7875
123 DUT MG 0.4 0.857143
Ligand no: 2; Ligand: NAG GAL; Similar ligands found: 194
No: Ligand ECFP6 Tc MDL keys Tc
1 NAG GAL 1 1
2 NAG GAL GAL 0.847458 1
3 NAG GAL NAG GAL 0.746269 0.9375
4 NAG GAL NAG GAL NAG GAL 0.746269 0.918367
5 NAG G6S 0.723077 0.725806
6 GDL NAG 0.716667 0.9375
7 TVD GAL 0.694915 0.918367
8 NAG GAL BGC GAL 0.691176 1
9 NAG GAL FUC GLA 0.680556 0.978261
10 NAG GAL NAG 0.676471 0.9375
11 NAG NAG NAG NAG NAG NAG 0.671875 0.918367
12 NAG NAG NAG NAG NAG 0.671875 0.918367
13 NAG NAG NAG NAG NAG NAG NAG NAG 0.671875 0.918367
14 NDG NAG NAG NAG NAG 0.671875 0.918367
15 NAG GAL FUC A2G 0.671642 0.978261
16 NAG BMA MAN MAN MAN MAN 0.649351 1
17 A2G GAL 0.639344 1
18 MAN NAG GAL 0.632353 1
19 NAG NAG MAN MAN MAN 0.625 0.9375
20 GAL NAG GAL 0.623188 1
21 NAG GAL UNU 0.608108 0.918367
22 NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.60241 1
23 NAG NAG NAG TMX 0.597222 0.775862
24 NAG BMA MAN MAN MAN MAN MAN MAN MAN MAN 0.595238 1
25 NAG NAG 0.588235 0.918367
26 NAG FUC GAL 0.585714 0.978261
27 NAG BMA 0.584615 0.897959
28 BGC GAL NGA GAL 0.583333 1
29 NAG BMA MAN MAN NAG GAL NAG GAL 0.581395 0.918367
30 GAL NAG GAL NAG GAL 0.581081 0.9375
31 NAG NAG BMA MAN NAG 0.567901 0.918367
32 NAG NAG BMA 0.567568 0.865385
33 BGC GAL NAG GAL 0.567568 1
34 MGC GAL 0.5625 0.957447
35 SN5 SN5 0.552239 0.803922
36 NDG BMA MAN MAN NAG GAL NAG 0.549451 0.918367
37 BGC GAL NGA 0.549296 1
38 NAG GCS GCS 0.545455 0.918367
39 NAG NAG BMA MAN MAN NAG GAL NAG 0.543478 0.918367
40 NDG BMA MAN MAN NAG MAN MAN 0.543478 0.9375
41 GLC GLC GLC GLC BGC GLC GLC 0.540984 0.733333
42 MAN BMA BMA BMA BMA BMA BMA 0.540984 0.733333
43 BGC BGC BGC BGC BGC BGC BGC BGC BGC 0.540984 0.733333
44 BGC GAL GLA NGA GAL 0.538462 1
45 ASG 0.532258 0.66129
46 NAG NAG BMA MAN MAN MAN MAN MAN MAN MAN 0.531915 0.9375
47 NAG GAL BEK 0.52381 0.789474
48 BGC GAL NAG 0.52 1
49 NAG 0.517857 0.888889
50 NGA 0.517857 0.888889
51 HSQ 0.517857 0.888889
52 A2G 0.517857 0.888889
53 NDG 0.517857 0.888889
54 BM3 0.517857 0.888889
55 G2F SHG BGC BGC 0.515152 0.673469
56 BGC GAL NAG NAG GAL GAL 0.511628 0.9375
57 BGC GLA GAL 0.508475 0.733333
58 MGL GAL 0.508197 0.73913
59 NDG GAL 0.507463 0.741379
60 A2G GAL NAG 0.506494 0.9375
61 BGC GAL GLA NGA 0.506329 1
62 NAG NAG BMA MAN 0.506024 0.865385
63 BGC GAL GLA 0.5 0.733333
64 NDG NAG 0.5 0.918367
65 BGC FUC GAL NAG GAL 0.494253 0.978261
66 NAG GAL FUC FUC 0.493506 0.957447
67 NDG FUC GAL FUC 0.493506 0.957447
68 LOG GAL 0.492958 0.803571
69 BMA MAN NAG 0.486842 1
70 NOK GAL 0.486111 0.8
71 BGC XGP 0.484848 0.611111
72 8VW 0.482353 0.849057
73 GAL NAG FUC GAL 0.481481 0.978261
74 GPM GLC 0.477612 0.6
75 KPM 0.47619 0.846154
76 GAL GLA 0.47541 0.733333
77 NAG GAL 5N6 0.474747 0.833333
78 A2G MBN GAL 0.474359 0.957447
79 BQZ 0.473684 0.666667
80 NAG GAL SIA 0.473118 0.865385
81 GLC BGC FUC GAL 0.471429 0.755556
82 BGC BGC BGC BGC BGC BGC BGC BGC 0.471429 0.733333
83 A2G NAG 0.471429 0.9375
84 BGC FUC GAL 0.471429 0.755556
85 FUC GAL 0.46875 0.733333
86 A2G SER GAL 0.467532 0.882353
87 NAG GAL FUC 0.467532 0.978261
88 BMA MAN MAN NAG GAL NAG 0.467391 0.9375
89 BGC GAL NAG GAL FUC 0.465909 0.978261
90 MBG A2G 0.464789 0.957447
91 MAN NAG 0.463768 1
92 NAG GCU NAG GCD 0.463158 0.833333
93 GCU BGC 0.462687 0.717391
94 GLC U8V 0.461538 0.76087
95 A2G THR GAL 0.461538 0.882353
96 C4W NAG FUC BMA 0.460674 0.865385
97 MBG GLA 0.459016 0.73913
98 NAG FUC 0.457143 0.956522
99 GLC GAL NAG GAL FUC GLA 0.456522 0.978261
100 GAL A2G MBN 0.455696 0.9375
101 GLC EDO GLC 0.454545 0.702128
102 MAG 0.451613 0.893617
103 2F8 0.451613 0.893617
104 BGC GLC GLC 0.450704 0.733333
105 G2F BGC BGC BGC BGC BGC 0.450704 0.66
106 BGC 5VQ GAL GLA 0.449275 0.708333
107 MAN BMA BMA 0.449275 0.702128
108 BGC GAL NAG GAL FUC FUC 0.445652 0.957447
109 MAN MAN 0.444444 0.695652
110 NAG GAL PKM 0.444444 0.849057
111 NAG GAL NAG GAL SIA 0.444444 0.849057
112 NAG NAG NAG 0.443038 0.849057
113 GAL GC2 0.443038 0.6875
114 NAG NAG NAG NAG 0.443038 0.849057
115 NAG NAG NAG NAG NAG NAG NAG 0.443038 0.849057
116 GLA NAG FUC GAL 0.44186 0.957447
117 GLC GLC GLC GLC GLC GLC GLC GLC GLC 0.44 0.733333
118 BMA BMA BMA BMA GLA 0.44 0.733333
119 NAG GAL NGC 0.44 0.865385
120 GLC BGC BGC BGC 0.439394 0.733333
121 BGC BGC BGC BGC BGC BGC BGC 0.439394 0.733333
122 BGC BGC BGC 0.439394 0.733333
123 BGC BGC BGC BGC BGC BGC 0.439394 0.733333
124 BGC BGC BGC BGC BGC 0.439394 0.733333
125 A2G NPO GAL 0.439024 0.714286
126 BGC GAL FUC 0.438356 0.755556
127 GLC GAL BGC FUC 0.438356 0.755556
128 MBG GAL 0.4375 0.73913
129 GAL FUC GAL 0.43662 0.755556
130 NAG BDP 0.432432 0.916667
131 AMU NAG 0.432099 0.9
132 BGC GAL FUC A2G 0.431818 0.978261
133 AHR FUB 0.431034 0.638298
134 RR7 GLC 0.430769 0.702128
135 GLC NBU GAL GLA 0.430556 0.68
136 GAL FUC A2G 0.43038 0.978261
137 BGC GAL FUC GLA 0.43038 0.755556
138 GLC GAL EMB GAL MEC 0.428571 0.75
139 1GN ACY GAL 1GN BGC ACY GAL BGC 0.426966 0.9375
140 GLC GLC GLC GLC GLC 0.426667 0.733333
141 BGC GLC GLC GLC 0.426667 0.733333
142 FRU BGC BGC BGC 0.424658 0.66
143 GAL NAG 0.424658 1
144 GN1 0.424242 0.75
145 NG1 0.424242 0.75
146 NAG NAG BMA BMA 0.423529 0.833333
147 GLC BGC BGC 0.421053 0.73913
148 ABL 0.42029 0.877551
149 MAG GAL FUC FUC 0.419753 0.9375
150 MAG FUC GAL FUC 0.419753 0.9375
151 LMT 0.418919 0.641509
152 UMQ 0.418919 0.641509
153 GAL NGA 0.418919 0.93617
154 LMU 0.418919 0.641509
155 DMU 0.418919 0.641509
156 C4W NAG FUC BMA MAN 0.418367 0.865385
157 MAN IPD MAN 0.41791 0.611111
158 FRU BMA 0.41791 0.64
159 GAL NGA A2G 0.415584 0.9375
160 RZM 0.415385 0.72549
161 Z3Q NGA 0.414634 0.762712
162 MAG SGA FUC 0.413793 0.714286
163 GLA NAG GAL FUC 0.411765 0.978261
164 BMA BMA BMA BMA 0.410959 0.733333
165 MBG NAG 0.410959 0.957447
166 4QY 0.409091 0.732143
167 GAL NAG GAL FUC FUC 0.409091 0.957447
168 16G 0.409091 0.732143
169 BMX 0.409091 0.732143
170 BGC FUC GAL NAG 0.409091 0.978261
171 GLC G6P 0.409091 0.611111
172 XYS GLC GLC 0.407895 0.755556
173 BMX BMX BMX BM3 0.407407 0.789474
174 NAG GAL FUC FUC A2G 0.406593 0.918367
175 NAG FUC GAL FUC A2G 0.406593 0.918367
176 SNG 0.40625 0.816327
177 AMU 0.405797 0.87234
178 MAN MNM 0.405797 0.84
179 MAN MAN MAN GLC 0.405405 0.733333
180 Z4S NAG NAG 0.404762 0.849057
181 ASG GC4 0.404762 0.671875
182 NAG NOJ NAG 0.404762 0.818182
183 NAG NOJ NAG NAG 0.404762 0.803571
184 GLC GAL NAG GAL FUC A2G 0.40404 0.918367
185 NAG NAG BMA MAN MAN MAN MAN 0.403846 0.865385
186 BMA MAN MAN 0.402778 0.733333
187 GLO GLC GLC 0.4 0.73913
188 BGC BGC XYS GAL 0.4 0.702128
189 CJX 0.4 0.784314
190 BGC OXZ BGC 0.4 0.690909
191 G2I 0.4 0.76
192 NBG 0.4 0.888889
193 NAG TA5 FUC 0.4 0.666667
194 G3I 0.4 0.76
Similar Ligands (3D)
Ligand no: 1; Ligand: UDP; Similar ligands found: 55
No: Ligand Similarity coefficient
1 YYY 0.9739
2 TYD 0.9699
3 TBD 0.9623
4 GCQ 0.9509
5 ADP 0.9410
6 DUN 0.9317
7 D4D 0.9237
8 ADX 0.9224
9 AU1 0.9218
10 AP2 0.9215
11 SON 0.9211
12 GDP 0.9193
13 DAT 0.9189
14 IDP 0.9155
15 PRX 0.9148
16 ADP MG 0.9122
17 BEF ADP 0.9122
18 AN2 0.9115
19 A12 0.9102
20 M33 0.9098
21 CA0 0.9083
22 G5A 0.9077
23 CUU 0.9055
24 GAP 0.8984
25 DGI 0.8977
26 GNH 0.8961
27 FZQ 0.8919
28 7D3 0.8915
29 DAL AMP 0.8905
30 H2U 0.8888
31 CH 0.8874
32 AZD 0.8849
33 PSU 0.8815
34 CK7 0.8802
35 AMP 0.8793
36 FN5 0.8781
37 6AD 0.8757
38 A5A 0.8754
39 HQ5 0.8747
40 DCM 0.8724
41 8LH 0.8718
42 8GD 0.8708
43 ATY 0.8691
44 BMQ 0.8679
45 U6M 0.8672
46 NUP 0.8671
47 DC 0.8658
48 DCP 0.8657
49 TMP 0.8642
50 C8M 0.8633
51 TTP 0.8581
52 ATP 0.8570
53 DDN 0.8568
54 C2R 0.8549
55 D4T 0.8531
Ligand no: 2; Ligand: NAG GAL; Similar ligands found: 33
No: Ligand Similarity coefficient
1 GAL NOK 0.9750
2 GAL NGT 0.9653
3 NGT GAL 0.9607
4 NAG GCD 0.9574
5 NAG GAD 0.9574
6 NAG GC4 0.9567
7 NGA GAL 0.9460
8 4WS GAL 0.9336
9 BGC GAL 0.9334
10 NDG GAD 0.9333
11 GLC GAL 0.9240
12 NGA GCD 0.9206
13 BGC BGC 0.8986
14 NOY BGC 0.8959
15 FRU GAL 0.8956
16 BGC Z9D 0.8916
17 PA1 GCS 0.8915
18 GCS GCS 0.8870
19 GAL GAL 0.8852
20 GLC BGC 0.8850
21 SHG BGC 0.8846
22 IFM BGC 0.8815
23 BGC SGA 0.8766
24 NGA NAG 0.8764
25 BMA GAL 0.8697
26 GAL SO4 GAL 0.8664
27 GRI 0.8601
28 BG0 0.8599
29 MGL SGC 0.8592
30 BMA BGC 0.8585
31 NKH 0.8575
32 GHT 0.8562
33 WAN 0.8517
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1O7Q; Ligand: UDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1o7q.bio1) has 6 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1O7Q; Ligand: UDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1o7q.bio1) has 32 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1O7Q; Ligand: UDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1o7q.bio2) has 5 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1O7Q; Ligand: NAG GAL; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1o7q.bio2) has 29 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1O7Q; Ligand: UDP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1o7q.bio2) has 29 residues
No: Leader PDB Ligand Sequence Similarity
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