Receptor
PDB id Resolution Class Description Source Keywords
1GK8 1.4 Å EC: 4.1.1.39 RUBISCO FROM CHLAMYDOMONAS REINHARDTII CHLAMYDOMONAS REINHARDTII LYASE RUBISCO PHOTOSYNTHESIS
Ref.: FIRST CRYSTAL STRUCTURE OF RUBISCO FROM A GREEN ALG CHLAMYDOMONAS REINHARDTII. J.BIOL.CHEM. V. 276 48159 2001
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CAP A:1477;
C:1477;
E:1477;
G:1477;
 Valid;
Valid;
Valid;
Valid;
 none;
none;
none;
none;
 submit data
356.115 C6 H14 O13 P2 C([C@...
EDO A:1478;
A:1479;
A:1480;
A:1481;
A:1482;
A:1483;
A:1484;
C:1478;
C:1479;
C:1480;
C:1481;
C:1482;
E:1478;
E:1479;
E:1480;
E:1481;
E:1482;
E:1483;
E:1484;
G:1478;
G:1479;
G:1480;
G:1481;
G:1482;
G:1483;
I:1127;
I:1128;
K:1127;
K:1128;
M:1127;
M:1128;
O:1127;
O:1128;
 Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
Invalid;
 none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
none;
 submit data
62.068 C2 H6 O2 C(CO)...
MG A:1476;
C:1476;
E:1476;
G:1476;
 Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
 none;
none;
none;
none;
 submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1GK8 1.4 Å EC: 4.1.1.39 RUBISCO FROM CHLAMYDOMONAS REINHARDTII CHLAMYDOMONAS REINHARDTII LYASE RUBISCO PHOTOSYNTHESIS
Ref.: FIRST CRYSTAL STRUCTURE OF RUBISCO FROM A GREEN ALG CHLAMYDOMONAS REINHARDTII. J.BIOL.CHEM. V. 276 48159 2001
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 20 families.
1 1GK8 - CAP C6 H14 O13 P2 C([C@H]([C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 17 families.
1 1GK8 - CAP C6 H14 O13 P2 C([C@H]([C....
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 1GK8 - CAP C6 H14 O13 P2 C([C@H]([C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: CAP; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 CAP 1 1
2 XDP 0.543478 0.945946
3 DEZ 0.434783 0.918919
4 DER 0.434783 0.918919
5 4TP 0.416667 0.772727
6 R10 0.408163 0.918919
7 PA5 0.408163 0.918919
8 HG3 0.404762 0.810811
Similar Ligands (3D)
Ligand no: 1; Ligand: CAP; Similar ligands found: 6
No: Ligand Similarity coefficient
1 XBP 0.9050
2 RUB 0.8822
3 IR8 0.8758
4 AHG 0.8707
5 PAZ 0.8646
6 UMP 0.8564
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 2; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 3; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 3) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 4; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 4) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 5; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 5) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 6; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 6) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 7; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 7) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
Pocket No.: 8; Query (leader) PDB : 1GK8; Ligand: CAP; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 8) in the query (biounit: 1gk8.bio1) has 23 residues
No: Leader PDB Ligand Sequence Similarity
APoc FAQ
Feedback