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Receptor
PDB id Resolution Class Description Source Keywords
1FFU 2.35 Å EC: 3.-.-.- CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA WHICH LACKS THE MO-PYRANOPTERIN MOIETY OF THE M OLYBDENUM COFACTOR HYDROGENOPHAGA PSEUDOFLAVA HYDROLASE DEHYDROGENASE
Ref.: THE EFFECT OF INTRACELLULAR MOLYBDENUM IN HYDROGENOPHAGA PSEUDOFLAVA ON THE CRYSTALLOGRAPHIC STRUCTURE OF THE SELENO-MOLYBDO-IRON-SULFUR FLAVOENZYME CARBON MONOXIDE DEHYDROGENASE. J.MOL.BIOL. V. 301 1221 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CDP B:1920;
E:1921;
Valid;
Valid;
none;
none;
submit data
403.176 C9 H15 N3 O11 P2 C1=CN...
FAD C:1930;
F:1931;
Valid;
Valid;
none;
none;
submit data
785.55 C27 H33 N9 O15 P2 Cc1cc...
FES A:1907;
A:1908;
D:1909;
D:1910;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
175.82 Fe2 S2 S1[Fe...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1FFU 2.35 Å EC: 3.-.-.- CARBON MONOXIDE DEHYDROGENASE FROM HYDROGENOPHAGA PSEUDOFLAVA WHICH LACKS THE MO-PYRANOPTERIN MOIETY OF THE M OLYBDENUM COFACTOR HYDROGENOPHAGA PSEUDOFLAVA HYDROLASE DEHYDROGENASE
Ref.: THE EFFECT OF INTRACELLULAR MOLYBDENUM IN HYDROGENOPHAGA PSEUDOFLAVA ON THE CRYSTALLOGRAPHIC STRUCTURE OF THE SELENO-MOLYBDO-IRON-SULFUR FLAVOENZYME CARBON MONOXIDE DEHYDROGENASE. J.MOL.BIOL. V. 301 1221 2000
Members (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 253 families.
1 1FFV - PCD C19 H26 Mo N8 O16 P2 S2 C1=CN(C(=O....
2 1FFU - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
70% Homology Family (2)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1FFV - PCD C19 H26 Mo N8 O16 P2 S2 C1=CN(C(=O....
2 1FFU - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1N61 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
2 1N5W - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
3 1ZXI - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
4 1N62 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
5 1N63 - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
6 1N60 - MCN C19 H22 N8 O13 P2 S2 C1=CN(C(=O....
7 1FFV - PCD C19 H26 Mo N8 O16 P2 S2 C1=CN(C(=O....
8 1FFU - FAD C27 H33 N9 O15 P2 Cc1cc2c(cc....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: CDP; Similar ligands found: 91
No: Ligand ECFP6 Tc MDL keys Tc
1 CDP 1 1
2 CTP 0.895522 1
3 HF4 0.895522 1
4 CAR 0.787879 0.985507
5 C 0.787879 0.985507
6 C5P 0.787879 0.985507
7 7XL 0.77027 0.944444
8 C2G 0.74026 0.957747
9 CDC 0.725 0.82716
10 C5G 0.707317 0.944444
11 CDM 0.695122 0.894737
12 CXY 0.678571 0.944444
13 CTN 0.636364 0.857143
14 AR3 0.636364 0.857143
15 C C C C 0.623529 0.916667
16 1AA 0.619565 0.906667
17 C C 0.607143 0.929577
18 UDP 0.605263 0.942029
19 I5A 0.602941 0.816901
20 YYY 0.582278 0.90411
21 GCQ 0.560976 0.90411
22 C3P 0.56 0.942857
23 MCN 0.557692 0.819277
24 PMT 0.554455 0.85
25 91P 0.553398 0.851852
26 UTP 0.54321 0.942029
27 2AA 0.542857 0.693878
28 16B 0.538462 0.917808
29 CSV 0.536842 0.905405
30 CSQ 0.536842 0.905405
31 DCP 0.535714 0.90411
32 GTF 0.523256 0.90411
33 C2P 0.519481 0.957143
34 PCD 0.517857 0.781609
35 FN5 0.509434 0.871795
36 GPC 0.509091 0.819277
37 CSF 0.504587 0.871795
38 DKZ 0.5 0.746667
39 UNP 0.488372 0.915493
40 TKW 0.4875 0.971429
41 G C 0.481818 0.8375
42 5GW 0.477778 0.890411
43 5HM 0.47561 0.958333
44 A C A C 0.464912 0.835443
45 DC 0.463415 0.890411
46 DCM 0.463415 0.890411
47 U A C C 0.452174 0.846154
48 UPP 0.451613 0.888889
49 UDH 0.451613 0.844156
50 G8D 0.450549 0.907895
51 U 0.45 0.927536
52 U5P 0.45 0.927536
53 C5P SIA 0.447368 0.893333
54 URM 0.446809 0.876712
55 660 0.446809 0.876712
56 GDU 0.446809 0.888889
57 UFM 0.446809 0.888889
58 GUD 0.446809 0.888889
59 UPG 0.446809 0.888889
60 8OD 0.445652 0.855263
61 G G G C 0.444444 0.85
62 UPU 0.444444 0.887324
63 4GW 0.443299 0.866667
64 A G C C 0.440678 0.848101
65 DOC 0.439024 0.890411
66 M7G 0.43617 0.829268
67 UFG 0.43299 0.842105
68 UPF 0.43299 0.842105
69 U2F 0.43299 0.842105
70 2KH 0.431818 0.915493
71 G C C C 0.42623 0.860759
72 CG2 0.421053 0.873418
73 A U C C 0.420635 0.835443
74 G3N 0.42 0.890411
75 UDP UDP 0.418605 0.885714
76 UAD 0.418367 0.888889
77 UDX 0.418367 0.888889
78 44P 0.416667 0.902778
79 3UC 0.415842 0.842105
80 M7M 0.412371 0.797619
81 8GT 0.410526 0.907895
82 V12 0.41 0.75
83 UGB 0.41 0.901408
84 USQ 0.41 0.780488
85 UGA 0.41 0.901408
86 UP5 0.405405 0.857143
87 GEO 0.405063 0.783784
88 UDM 0.403846 0.864865
89 H6Y 0.402062 0.855263
90 NVG 0.401961 0.731707
91 CTP C C C C 0.4 0.915493
Ligand no: 2; Ligand: FAD; Similar ligands found: 128
No: Ligand ECFP6 Tc MDL keys Tc
1 FAD 1 1
2 FAS 1 1
3 FAY 0.859259 0.9875
4 RFL 0.852941 0.963855
5 6FA 0.794118 0.987654
6 FAE 0.751773 0.987654
7 SFD 0.651007 0.860215
8 FDA 0.641892 0.906977
9 FNK 0.602564 0.876405
10 62F 0.572327 0.939024
11 F2N 0.566265 0.886364
12 FMN 0.543307 0.876543
13 FA9 0.526316 0.939759
14 6YU 0.516304 0.860215
15 P6G FDA 0.511628 0.908046
16 FAD NBT 0.508876 0.83871
17 A2D 0.504065 0.875
18 P5F 0.491329 0.941176
19 FAD CNX 0.488506 0.8125
20 AR6 0.488372 0.851852
21 APR 0.488372 0.851852
22 AGS 0.484615 0.811765
23 SAP 0.484615 0.811765
24 M33 0.484375 0.864198
25 BA3 0.484127 0.875
26 HEJ 0.48062 0.851852
27 ATP 0.48062 0.851852
28 ADP 0.480315 0.851852
29 B4P 0.480315 0.875
30 AP5 0.480315 0.875
31 ANP 0.477273 0.831325
32 AQP 0.476923 0.851852
33 5FA 0.476923 0.851852
34 48N 0.469388 0.902439
35 OAD 0.467626 0.876543
36 9X8 0.467626 0.833333
37 FAD NBA 0.467033 0.793814
38 GTA 0.465753 0.892857
39 AN2 0.465116 0.841463
40 AT4 0.465116 0.821429
41 AD9 0.462121 0.831325
42 3OD 0.460993 0.876543
43 RBF 0.460938 0.790123
44 FB0 0.460606 0.835165
45 139 0.460526 0.858824
46 AP0 0.46 0.835294
47 A22 0.459854 0.864198
48 ACP 0.458015 0.853659
49 8QN 0.456522 0.864198
50 PRX 0.454545 0.831325
51 A3R 0.453237 0.86747
52 A1R 0.453237 0.86747
53 G3A 0.452055 0.902439
54 T5A 0.45098 0.872093
55 G5P 0.44898 0.902439
56 ATF 0.448529 0.821429
57 50T 0.44697 0.819277
58 6YZ 0.445255 0.853659
59 ACQ 0.444444 0.853659
60 CNV FAD 0.443182 0.917647
61 ADQ 0.442857 0.853659
62 PAJ 0.442857 0.847059
63 5AL 0.441176 0.864198
64 ADX 0.439394 0.775281
65 CA0 0.439394 0.853659
66 A4P 0.437909 0.831461
67 25L 0.4375 0.864198
68 P33 FDA 0.436464 0.817204
69 5SV 0.435714 0.793103
70 OMR 0.434211 0.818182
71 TXE 0.434211 0.890244
72 ABM 0.434109 0.829268
73 A 0.433071 0.82716
74 AMP 0.433071 0.82716
75 4AD 0.432624 0.855422
76 ADJ 0.432258 0.818182
77 B5M 0.431507 0.878049
78 B5Y 0.431507 0.878049
79 BIS 0.430556 0.802326
80 SRA 0.429688 0.788235
81 AFH 0.42953 0.825581
82 NXX 0.427632 0.865854
83 DND 0.427632 0.865854
84 UP5 0.427632 0.878049
85 6V0 0.427632 0.857143
86 TXD 0.427632 0.890244
87 DQV 0.426667 0.8875
88 SRP 0.42446 0.843373
89 PR8 0.423611 0.837209
90 T99 0.423358 0.821429
91 TAT 0.423358 0.821429
92 AMO 0.422535 0.865854
93 TXA 0.42069 0.865854
94 FYA 0.42069 0.864198
95 PTJ 0.42069 0.835294
96 CNA 0.420382 0.865854
97 00A 0.41958 0.823529
98 AHX 0.41958 0.835294
99 MAP 0.41844 0.811765
100 NAI 0.418301 0.845238
101 AU1 0.41791 0.831325
102 A12 0.416667 0.843373
103 AP2 0.416667 0.843373
104 25A 0.415493 0.851852
105 9ZA 0.415493 0.845238
106 9ZD 0.415493 0.845238
107 COD 0.415094 0.842697
108 4TC 0.412903 0.879518
109 APC 0.411765 0.843373
110 ME8 0.410959 0.806818
111 1ZZ 0.410959 0.806818
112 NB8 0.410959 0.835294
113 4UW 0.409091 0.825581
114 NAX 0.409091 0.837209
115 F2R 0.408805 0.850575
116 RBY 0.408759 0.843373
117 ADV 0.408759 0.843373
118 P1H 0.405882 0.818182
119 OOB 0.405594 0.864198
120 LAD 0.40411 0.825581
121 A A 0.40411 0.829268
122 UPA 0.403846 0.86747
123 4UU 0.401316 0.833333
124 GA7 0.401316 0.865854
125 A3D 0.401235 0.876543
126 80F 0.401235 0.808989
127 XAH 0.4 0.806818
128 DLL 0.4 0.864198
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1FFU; Ligand: FAD; Similar sites found with APoc: 252
This union binding pocket(no: 1) in the query (biounit: 1ffu.bio1) has 37 residues
No: Leader PDB Ligand Sequence Similarity
1 5MQW ATP 2.82258
2 5MQW GTP 2.82258
3 2OG2 MLI 3.06407
4 1G6H ADP 3.11284
5 1PMO PLR 3.13589
6 2E0P CTT 3.13589
7 5AWM ANP 3.48432
8 3B9Q MLI 3.64238
9 4WZ6 ATP 3.7931
10 3T64 DU3 3.8674
11 2BTM PGA 3.96825
12 2GQT FAD 4.10448
13 3FXU TSU 4.18118
14 4DC2 ADE 4.29448
15 2F57 23D 4.29448
16 5WNL STU 4.29448
17 4D86 ADP 4.29448
18 4FG8 ATP 4.29448
19 2RIO ADP 4.60829
20 1DLL LAT 4.7619
21 2AK3 AMP 4.86726
22 5TED SKM 4.86726
23 6CS8 F9Y 4.87805
24 1TKU 5RP 4.87805
25 5OFW 9TW 4.90798
26 5N53 8NB 4.90798
27 1U59 STU 4.90798
28 2PZI AXX 4.90798
29 5GVR LMR 4.90798
30 2AWN ADP 4.90798
31 5EH0 5NW 4.90798
32 3GFZ FMN 4.90798
33 6CMJ F6J 4.90798
34 4IP7 FBP 4.90798
35 5HV7 RBL 5.04587
36 2JKY 5GP 5.16432
37 3W54 RNB 5.16717
38 3NIP 16D 5.21472
39 4WNP 3RJ 5.22648
40 4BHN BH9 5.22648
41 4UX9 ANP 5.22648
42 3S6X SIA GAL BGC 5.23077
43 2DT9 THR 5.38922
44 2I0K FAD 5.52147
45 3WXL ADP 5.52147
46 5LV1 78T 5.52147
47 2UUU FAD 5.52147
48 4O1P ANP 5.52147
49 2UUU PL3 5.52147
50 5LVP ATP 5.52147
51 6AM8 TRP 5.52147
52 1E8G FCR 5.57491
53 1E8G FAD 5.57491
54 1G8S MET 5.65217
55 5JZJ AN2 5.72391
56 2PS1 ORO 5.75221
57 2PS1 PRP 5.75221
58 3GC0 AMP 5.77508
59 5M06 ADP 5.7971
60 1GOJ ADP 5.91549
61 3KP6 SAL 5.96026
62 1XTT U5P 6.01852
63 2VN9 GVD 6.13497
64 6F3G CJN 6.13497
65 4WOH 4NP 6.13497
66 5MRH Q9Z 6.13497
67 3B6C SDN 6.13497
68 2VZ6 FEF 6.13497
69 1BYG STU 6.13497
70 5CQG 55C 6.13497
71 4H3Q ANP 6.13497
72 2DTJ THR 6.17978
73 2FXV 5GP 6.18557
74 3AB4 LYS 6.27178
75 3AB4 THR 6.27178
76 3JQM GTP 6.36943
77 3VY6 BGC BGC 6.38298
78 3EWA ANP 6.52174
79 5HC0 NPO 6.57534
80 3KIF GDL 6.60377
81 2MBR FAD 6.74847
82 2MBR EPU 6.74847
83 2J5V PCA 6.74847
84 3KU0 ADE 6.74847
85 4B2D FBP 6.74847
86 5C9P FUC 6.82415
87 1QK3 5GP 6.86695
88 4RHY 3QG 6.96517
89 1Q8Q MAN MMA 7.14286
90 1Q8S MAN MMA 7.14286
91 2GND MAN MMA 7.14286
92 1Q8P MAN MMA 7.14286
93 2PHR MAN MAN 7.14286
94 2PHW MAN MAN 7.14286
95 2PHF MAN MAN 7.14286
96 1Q8V MAN MAN MAN 7.14286
97 2PHX MAN MAN MAN MAN 7.14286
98 2PHU MAN MAN MAN BMA MAN 7.14286
99 2PHT MAN MAN MAN BMA MAN 7.14286
100 2PHW MAN MAN MAN BMA MAN MAN MAN 7.14286
101 3ACC 5GP 7.18232
102 5KQG 6VX 7.30337
103 1V8K ANP 7.31707
104 1PVC ILE SER GLU VAL 7.35294
105 2WHX ADP 7.36196
106 1HGX 5GP 7.65027
107 3W8X FTK 7.69231
108 3W8X FAD 7.69231
109 5YW5 ADE 7.82123
110 1F0X FAD 7.97546
111 1L1Q 9DA 7.97546
112 2Q4W FAD 7.97546
113 3ITJ CIT 7.97546
114 1NE7 16G 7.97546
115 4JB1 NAP 7.97546
116 4JB1 FAD 7.97546
117 2JK0 ASP 7.97546
118 2WGH DTP 7.97546
119 2YAB AMP 7.97546
120 1MRH FMC 7.98479
121 3IP8 B85 8.06452
122 4K55 H6P 8.06452
123 1D1Q 4NP 8.07453
124 1P19 IMP 8.1448
125 4P86 5GP 8.19672
126 3G4Q MCH 8.21918
127 1TIQ COA 8.58896
128 1SJN DUP 8.58896
129 4F9C 0SX 8.58896
130 3MBI HSX 8.7108
131 1VBO MAN 8.72483
132 4AU8 Z3R 8.78378
133 4GV8 DUP 8.87574
134 1UNH IXM 8.90411
135 1A99 PUT 9.01163
136 1HSK FAD 9.05923
137 5L8L ADP 9.12281
138 5Z3I ADE 9.20245
139 2WW4 ADP 9.20245
140 3PDT ADP 9.20245
141 1V0O INR 9.40767
142 5WXK TYD 9.42408
143 1U5R ATP 9.48276
144 3TY3 GGG 9.7561
145 4BFM ANP 9.7561
146 1GQ2 OXL 9.7561
147 6BVE PGA 9.79592
148 1PZM 5GP 9.81595
149 4Y0X ADP 9.81595
150 3A4M ADP 9.81595
151 3TTM PUT 9.82659
152 2HYQ MAN MAN 9.83607
153 2GUD MAN 9.83607
154 2HYR BGC GLC 9.83607
155 4JLS 3ZE 9.86842
156 1APZ ASP 9.87654
157 4QM7 GTP 9.94152
158 6EK3 OUL 9.95475
159 1TRD PGH 10
160 4O48 ASP 10.1045
161 5LPB ADP 10.1351
162 5NDB 8TW 10.4
163 1XMV ADP 10.4294
164 5CX6 CDP 10.4294
165 4LRJ ANP 10.4294
166 4P83 U5P 10.4396
167 5HTX ADP 10.453
168 5VJN ADE 10.6952
169 5VJN IR8 10.6952
170 4Y8D 49J 10.7143
171 4PPF FLC 10.8014
172 1DQN IMU 10.8696
173 6AR9 3L4 11.0429
174 2PZE ATP 11.0429
175 6BYF CIT 11.0429
176 1UPF URF 11.0429
177 4BTK DTQ 11.0429
178 5GS9 ARG 11.0429
179 6FCH PRP 11.0429
180 1MZV AMP 11.0638
181 5G1X ADP 11.1111
182 6FLZ MMA 11.1111
183 3W6G FLC 11.1111
184 1Q19 SSC 11.1498
185 1XP8 AGS 11.2022
186 6GUE FB8 11.5894
187 1QB7 ADE 11.6564
188 5WXU FLC 11.6564
189 3ZFD ANP 11.6809
190 2X2M X2M 11.8467
191 4XJC TTP 11.8644
192 2Y7P SAL 11.9266
193 2JBH 5GP 12
194 3F81 STT 12.2699
195 1WDI CIT 12.2699
196 3GD8 GOL 12.2699
197 3LRE ADP 12.2699
198 6CB2 OLC 12.2699
199 3TAO PGH 12.3596
200 6APV 3L4 12.5
201 2WQN ADP 12.5436
202 4OOP DUP 12.6506
203 4X3H ARG ILE PRO SER TYR ARG TYR ARG TYR 12.6582
204 2DVZ GLU 12.7389
205 1XXA ARG 12.8205
206 4EKQ NPO 12.8342
207 5AE2 FYC 12.8834
208 5AE2 FAD 12.8834
209 3OZG SSI 12.8834
210 4G2R H1L 12.8834
211 2WEL K88 13.3333
212 2QRD ATP 13.4021
213 1T0S BML 13.4969
214 5I35 ANP 13.4969
215 4JEJ 1GP 13.5246
216 3DAK ANP 13.5889
217 1X0P FAD 13.986
218 1J1R ADE 14.1762
219 2QZT PLM 14.4144
220 3V8S 0HD 14.7239
221 4H4D 10E 14.7239
222 1K3A ACP 15.3374
223 4C2W ANP 15.3846
224 1QDS PGA 15.9363
225 2WDQ TEO 15.9509
226 3BU5 ATP 15.9509
227 1LNX URI 16.0494
228 3QDV NDG 16.0839
229 3QDW NDG 16.0839
230 3QDX CBS 16.0839
231 5UPK ANP 16.6667
232 2W58 ADP 16.8317
233 5LWY OLB 17.757
234 1O5O U5P 17.7914
235 4ZDM GLY 18.0077
236 5E5U MLI 18.4049
237 5EYW PGA 18.4049
238 6ACS CIT 18.6047
239 2QQC AG2 18.8679
240 4YDX TCE 19.403
241 3P48 DUP 19.7279
242 5YRF GLC GLC 20.4225
243 5YRI GLC GLC 20.4225
244 1SW0 PGA 20.8589
245 1T9D P22 23.3129
246 4BCN T9N 25.4355
247 1WUW TSU 26.6667
248 4YMU ATP 27.2727
249 1IR3 ANP 27.7778
250 4P8K FAD 28.2209
251 4P8K 38C 28.2209
252 4AUT FAD 28.8344
Pocket No.: 2; Query (leader) PDB : 1FFU; Ligand: CDP; Similar sites found with APoc: 195
This union binding pocket(no: 2) in the query (biounit: 1ffu.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
1 1LVW TYD 2.45399
2 2OG2 MLI 3.06407
3 2BMB PMM 3.06748
4 1G6H ADP 3.11284
5 1VR0 3SL 3.13589
6 2HZL PYR 3.48432
7 2JG1 ANP 3.48432
8 6EMU SAM 3.5533
9 3B9Q MLI 3.64238
10 5ME4 HP4 3.68098
11 4MXP DB4 3.68098
12 4UFH GIF 3.68098
13 2B9H ADP 3.68272
14 4TQK NAG 4.18118
15 3CB2 GDP 4.18118
16 4NSQ COA 4.21053
17 2UZH CDP 4.24242
18 2J0B UDP 4.28571
19 1WRA PC 4.29448
20 3TW1 AHN 4.29448
21 1V8B ADN 4.29448
22 1XA4 COA 4.29448
23 6F5W KG1 4.29448
24 6C4A PYR 4.29864
25 2O0J ADP 4.41558
26 6C0B PAM 4.48718
27 5LNW HG3 4.52962
28 4FE2 ADP 4.70588
29 1DCP HBI 4.80769
30 5HWK BEZ 4.87805
31 4KCT PYR 4.90798
32 2AWN ADP 4.90798
33 6HL7 CP 4.90798
34 4U00 ADP 4.90798
35 1CM0 COA 4.90798
36 4AF5 CIT 4.90798
37 1XV5 UDP 4.98753
38 2HIM ASN 5.02793
39 4BGB ADP 5.22648
40 1IK4 PGH 5.26316
41 1F9A ATP 5.35714
42 6E8I PTR 5.52147
43 2OG7 AHB 5.57491
44 1P6O HPY 5.59006
45 2II3 CAO 5.72519
46 4WEI GLC GAL 5.77617
47 3WW2 SF9 5.85938
48 5MZI FYK 6.13497
49 2VZ6 FEF 6.13497
50 3GXO SAH 6.13497
51 3B6O TMP 6.13497
52 3GWZ SAH 6.13497
53 4XDA RIB 6.13497
54 3PGU OLA 6.27178
55 2IGA XX2 6.30137
56 6CZY PMP 6.35359
57 3FIU POP 6.4257
58 3JUC PCA 6.53595
59 1IV2 CDP 6.57895
60 5CKS GAL 6.74847
61 5LY1 PPI 6.74847
62 4LOC OXM 6.74847
63 2ZKJ ADP 6.74847
64 2ZL4 ALA ALA ALA ALA 6.74847
65 3K6V CIT 6.74847
66 4LYA ATP 6.74847
67 1LVG ADP 6.74847
68 1GKZ ADP 6.74847
69 5VJE GOS 6.74847
70 1FWY UD1 6.74847
71 4QAG F95 6.76692
72 5KQA GSH 6.81818
73 5C9P FUC 6.82415
74 3HQP OXL 6.96864
75 5B0I BOG 6.96864
76 4UTU LRY 6.9869
77 4UTW RFW 6.9869
78 2AUY NAG MAN MMA 7.14286
79 2AR6 NAG MAN 7.14286
80 3HP8 SUC 7.27273
81 4TS1 TYR 7.31707
82 1R0X ATP 7.34266
83 2WHX ADP 7.36196
84 1W5T ADP 7.36196
85 4Q9N 0WE 7.36196
86 1LPD ADE 7.48031
87 2RI1 GLP 7.97546
88 2WPB ZZI 7.97546
89 1WAP TRP 8
90 2HNL GSH 8
91 5JIB OIA 8.01394
92 3HAV ATP 8.01394
93 5X2N ALA 8.01394
94 3N8K D1X 8.01394
95 1VKJ A3P 8.07018
96 4ZGR NGA GAL 8.09717
97 1QAW TRP 8.10811
98 5GWE GWM 8.36237
99 3BD9 A3P 8.57143
100 6FOG OXL 8.58896
101 1TIQ COA 8.58896
102 4D52 GXL 8.58896
103 6MVU K4V 8.58896
104 4KVL PLM 8.58896
105 1RZM E4P 8.7108
106 6CBO DOW 8.88383
107 4RJD TFP 9.09091
108 5WS9 OXL 9.20245
109 5WS9 ATP 9.20245
110 5N58 93W 9.20245
111 5CKW ANP 9.20245
112 3PLS ANP 9.20245
113 5G1N PAL 9.20245
114 3ZZQ TRP 9.23077
115 3ZZS TRP 9.23077
116 6GH9 MIX 9.40767
117 1XVB BHL 9.41177
118 1O8B ABF 9.58904
119 3BF1 PAU 9.63855
120 4POS NAG SIA GAL 9.71223
121 1OBB MAL 9.7561
122 3R4Z GLA 9.81595
123 5XIO HFG 9.81595
124 3A4M ADP 9.81595
125 1YKD CMP 9.81595
126 5TDF ADE 9.87654
127 2GJ3 FAD 10
128 4UP4 GAL NAG 10.1045
129 4O48 ASP 10.1045
130 3RF4 FUN 10.3448
131 1XMV ADP 10.4294
132 5CX6 CDP 10.4294
133 4LRJ ANP 10.4294
134 5IDB BMA 10.5634
135 4GGL CJC 10.6977
136 4PPF FLC 10.8014
137 1Q3P GLU ALA GLN THR ARG LEU 11.0092
138 2G50 PYR 11.0429
139 2GAG FOA 11.0429
140 1LK7 DER 11.0429
141 2PZE ATP 11.0429
142 1HG4 LPP 11.0429
143 5JBX MLI 11.1111
144 6DW2 HD4 11.1498
145 2AF6 FAD 11.6279
146 5WXU FLC 11.6564
147 3R7F CP 11.6564
148 5AEW BNL 11.6564
149 1XG4 ICT 11.6564
150 4XJC TTP 11.8644
151 3ZKN WZV 11.9171
152 2AKO ADP 11.9522
153 1MID LAP 12.0879
154 2CBZ ATP 12.2363
155 4F9U PBD 12.2699
156 4LZB URA 12.2699
157 4PL9 ADP 12.5683
158 2DVZ GLU 12.7389
159 4EKQ NPO 12.8342
160 1G16 GDP 12.8834
161 6G33 5ID 12.8834
162 4JX1 CAH 13.4969
163 2PEZ DAT 13.4969
164 4EHQ GBL 13.5135
165 4LFL TG6 13.9535
166 4BG4 ARG 14.1104
167 3GJ5 GDP 14.7059
168 3GJ3 GDP 15.1515
169 3GJ7 GDP 15.3061
170 5IKI A9H 15.331
171 5OKU 0L1 15.3374
172 3W5N RAM 15.3374
173 2HRL SIA GAL SIA BGC NGA CEQ 15.748
174 3W68 4PT 16.5644
175 3RHC GSH 16.8142
176 1XPJ TLA 17.4603
177 1O5O U5P 17.7914
178 5XK9 DMA 18.4049
179 1ZTH ADP 18.4049
180 1JJV ATP 18.4466
181 4BQS ADP 18.75
182 4K47 WMP 18.75
183 6F7X MFU 18.8889
184 1ZEI CRS 20.7547
185 2X5D PLP 20.8589
186 3GJ4 GDP 21.2121
187 2YAJ 4HP 22.093
188 2YIP YIO 22.4638
189 4OGQ 7PH 23.5294
190 4DFU QUE 23.913
191 3K5I AIR 23.9264
192 3K5I ADP 23.9264
193 4BCN T9N 25.4355
194 3BRE C2E 26.9939
195 1O9U ADZ 33.3333
Pocket No.: 3; Query (leader) PDB : 1FFU; Ligand: FAD; Similar sites found with APoc: 69
This union binding pocket(no: 3) in the query (biounit: 1ffu.bio1) has 36 residues
No: Leader PDB Ligand Sequence Similarity
1 3P7G MAN 3.42466
2 4JE5 PMP 3.68098
3 4M00 SUC 3.83275
4 4CIB 7UZ 3.95604
5 1G51 AMP 4.29448
6 5NC1 NAG 4.87805
7 2ZV2 609 4.90798
8 3SLS ANP 4.90798
9 5EW0 3C7 5.12821
10 4HNN LYS 5.22648
11 4IDT T28 5.22648
12 5TQZ GLC 5.33333
13 4IEE AGS 5.52147
14 2WE0 UMP 5.59441
15 1LES GLC FRU 5.76923
16 1VRP IOM 5.92335
17 3C0G 3AM 6.13497
18 4XDA RIB 6.13497
19 2HHJ 3PG 6.13497
20 2HHJ DG2 6.13497
21 5W7B MYR 6.38298
22 2NSJ C2R 6.50888
23 5HR5 FLC 6.62021
24 5N9X THR 6.74847
25 3A06 FOM 6.74847
26 4LYA ATP 6.74847
27 5HJQ I3P 6.74847
28 2F5X ASP 6.74847
29 1O94 ADP 6.74847
30 5VKI THR NGA GAL NAG 6.875
31 4FHT DHB 7.00637
32 2PHX MAN MAN 7.14286
33 1UKG MMA 7.14286
34 4MCC 21X 7.31707
35 4DE3 DN8 7.36196
36 4OAV ACP 7.36196
37 5TCI MLI 7.97546
38 2VAR KDG 7.97546
39 5EYY MDM 8.16327
40 3VPD BUA 8.58896
41 2X5F PLP 8.58896
42 3NOJ PYR 8.82353
43 3O0G 3O0 8.90411
44 5G6U YJM 9.1954
45 5WS9 OXL 9.20245
46 5GQI CTP 9.31174
47 5GQI ATP 9.31174
48 1U6R IOM 9.40767
49 2Z49 AMG 9.40767
50 2GUC MAN 9.83607
51 2NUO BGC 9.83607
52 2YPI PGA 10.5263
53 3NHB ADP 11.0429
54 4BKS X6C 11.5385
55 1LOB MMA 11.5385
56 6HKE LMR 11.6352
57 5TE1 7A2 11.6564
58 5FII PHE 12.7451
59 2VVG ADP 12.8834
60 4EHQ GBL 13.5135
61 2HY0 306 14.1104
62 1ZY5 ANP 14.1914
63 4CS9 AMP 14.8148
64 1YBH P22 16.5644
65 1XPJ TLA 17.4603
66 4K47 WMP 18.75
67 4NM5 ADP 25
68 4BCM T7Z 27.5261
69 2XN5 FUN 28.5714
Pocket No.: 4; Query (leader) PDB : 1FFU; Ligand: CDP; Similar sites found with APoc: 73
This union binding pocket(no: 4) in the query (biounit: 1ffu.bio1) has 39 residues
No: Leader PDB Ligand Sequence Similarity
1 2AEL SAZ 3.68098
2 2GPT SKM 3.83275
3 5B3A 0JO 3.83275
4 5ORG 6DB 4.18251
5 6GBX S77 4.25532
6 2GEK GDP 4.29448
7 4AMV F6R 4.29448
8 1B7A OPE 4.30108
9 3N9R TD3 4.52962
10 2Z4T C5P 4.87805
11 4IP7 FLC 4.90798
12 5ZCT ANP 4.90798
13 1J6X MET 5
14 1M0S CIT 5.02283
15 2HIM ASP 5.02793
16 1KOJ PAN 5.57491
17 1G8S MET 5.65217
18 2QPU QPS 5.92335
19 3LCC SAH 5.95745
20 1XTT U5P 6.01852
21 4G6I RS3 6.19048
22 2EB5 OXL 6.36704
23 5TZO 7V7 6.38298
24 6CGN DA 6.62021
25 5FAW CHT 6.74847
26 5A0U CHT 6.74847
27 1T3D CYS 6.74847
28 2POC BG6 6.81199
29 3HQP FDP 6.96864
30 1KSK URA 7.36196
31 1L1E SAH 7.66551
32 5H5O PCG 7.75194
33 2JK0 ASP 7.97546
34 3AI8 HNQ 7.97546
35 1LSH PLD 8.15047
36 1SQL GUN 8.21918
37 3IO3 ADP 8.36237
38 4RYV ZEA 8.3871
39 3KMT SAH 8.40336
40 4XBA GMP 8.5
41 3H2K BOG 8.58896
42 3OCP CMP 8.63309
43 4XWM CBK 8.7108
44 5TVA AMP 9.16667
45 4JZ8 CIT 9.20245
46 1OIJ AKG 9.40767
47 1DQE BOM 9.48905
48 3TY3 GGG 9.7561
49 2B6N ALA PRO THR 9.81595
50 4JLS 3ZE 9.86842
51 5BRP PNG 10.4294
52 3LL5 ATP 10.4418
53 1G1T SIA GAL MAG FUC 10.828
54 1A8R GTP 10.8597
55 1NXJ TLA 10.929
56 5LX9 OLB 11.0429
57 4CSD MFU 11.0429
58 1S16 ANP 11.1498
59 5OSW DIU 11.6564
60 2AJH MET 11.7347
61 1RZX ACE VAL LYS GLU SER LEU VAL 12.2449
62 4YGM URA 12.2699
63 5W75 SUC 12.2699
64 5CHR 4NC 12.4088
65 2OFW ADX 12.8834
66 2WEL K88 13.3333
67 1JXN MFU 14.4628
68 6CS9 PIO 14.6341
69 5KY9 GDP 15
70 4C2W ANP 15.3846
71 5UPK ANP 16.6667
72 2W58 ADP 16.8317
73 2ZHZ ATP 19.6721
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