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Receptor
PDB id Resolution Class Description Source Keywords
1F06 2.1 Å EC: 1.4.1.16 THREE DIMENSIONAL STRUCTURE OF THE TERNARY COMPLEX OF CORYNE GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE NADPH-L-2-AMINO-6-P IMELATE CORYNEBACTERIUM GLUTAMICUM ENZYME-NADPH-INHIBITOR TERNARY COMPLEX OXIDOREDUCTASE
Ref.: THE THREE-DIMENSIONAL STRUCTURE OF THE TERNARY COMP CORYNEBACTERIUM GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE-NADPH-L-2-AMINO-6-METHYLENE-PIMELATE. PROTEIN SCI. V. 9 2034 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
2NP B:950;
Valid;
none;
Ki = 5 uM
187.193 C8 H13 N O4 C=C(C...
NDP A:401;
B:901;
Valid;
Valid;
none;
none;
submit data
745.421 C21 H30 N7 O17 P3 c1nc(...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1F06 2.1 Å EC: 1.4.1.16 THREE DIMENSIONAL STRUCTURE OF THE TERNARY COMPLEX OF CORYNE GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE NADPH-L-2-AMINO-6-P IMELATE CORYNEBACTERIUM GLUTAMICUM ENZYME-NADPH-INHIBITOR TERNARY COMPLEX OXIDOREDUCTASE
Ref.: THE THREE-DIMENSIONAL STRUCTURE OF THE TERNARY COMP CORYNEBACTERIUM GLUTAMICUM DIAMINOPIMELATE DEHYDROGENASE-NADPH-L-2-AMINO-6-METHYLENE-PIMELATE. PROTEIN SCI. V. 9 2034 2000
Members (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1F06 Ki = 5 uM 2NP C8 H13 N O4 C=C(CCC[C@....
2 1DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
3 3DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
4 2DAP - API C7 H14 N2 O4 C(C[C@H](C....
70% Homology Family (4)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 3 families.
1 1F06 Ki = 5 uM 2NP C8 H13 N O4 C=C(CCC[C@....
2 1DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
3 3DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
4 2DAP - API C7 H14 N2 O4 C(C[C@H](C....
50% Homology Family (7)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 5GZ3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 3WYC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
3 5GZ6 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
4 1F06 Ki = 5 uM 2NP C8 H13 N O4 C=C(CCC[C@....
5 1DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
6 3DAP - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
7 2DAP - API C7 H14 N2 O4 C(C[C@H](C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: 2NP; Similar ligands found: 18
No: Ligand ECFP6 Tc MDL keys Tc
1 2NP 1 1
2 UN1 0.571429 0.75
3 11C 0.571429 0.75
4 26P 0.567568 0.735294
5 API 0.515152 0.75
6 ORN 0.472222 0.6
7 NPI 0.461538 0.78125
8 NLE 0.459459 0.6
9 DLY 0.447368 0.628571
10 LYS 0.435897 0.611111
11 DHH 0.435897 0.727273
12 6CL 0.414634 0.727273
13 GLU 0.405405 0.71875
14 DGN 0.405405 0.611111
15 GGL 0.405405 0.71875
16 GLN 0.405405 0.611111
17 DGL 0.405405 0.71875
18 KKA 0.4 0.65
Ligand no: 2; Ligand: NDP; Similar ligands found: 172
No: Ligand ECFP6 Tc MDL keys Tc
1 NDP 1 1
2 0WD 0.827273 1
3 NAI 0.803738 0.986842
4 NMN AMP PO4 0.794643 0.948052
5 NPW 0.692308 0.962025
6 NZQ 0.686441 0.987013
7 1DG 0.68 1
8 DG1 0.68 1
9 A2R 0.650943 0.909091
10 A22 0.64486 0.934211
11 TXP 0.644628 0.924051
12 ATR 0.640777 0.894737
13 NA7 0.636364 0.886076
14 XNP 0.620968 0.949367
15 AP0 0.598361 0.948718
16 A2P 0.598039 0.881579
17 NJP 0.574803 0.923077
18 25L 0.550847 0.934211
19 ODP 0.550388 0.936709
20 NAX 0.544 0.949367
21 25A 0.53913 0.921053
22 80F 0.537879 0.914634
23 2AM 0.529412 0.87013
24 6V0 0.519685 0.974026
25 NAP 0.514493 0.922078
26 7L1 0.507143 0.763441
27 EAD 0.507143 0.949367
28 A2D 0.504673 0.921053
29 TXE 0.503876 0.935897
30 NA0 0.496454 0.910256
31 TXD 0.496124 0.911392
32 SAP 0.495575 0.875
33 AGS 0.495575 0.875
34 P1H 0.493056 0.925926
35 CO7 0.489796 0.791209
36 TAP 0.489362 0.864198
37 PAP 0.482456 0.907895
38 BA3 0.481818 0.921053
39 NAJ PZO 0.478261 0.924051
40 ATP 0.477876 0.921053
41 HEJ 0.477876 0.921053
42 B4P 0.477477 0.921053
43 AP5 0.477477 0.921053
44 ADP 0.477477 0.921053
45 OAD 0.47541 0.897436
46 AR6 0.473684 0.896104
47 AQP 0.473684 0.921053
48 5FA 0.473684 0.921053
49 APR 0.473684 0.896104
50 AN2 0.473214 0.909091
51 3OD 0.467742 0.897436
52 50T 0.464912 0.884615
53 NAJ PYZ 0.464789 0.879518
54 9X8 0.463415 0.851852
55 PO4 PO4 A A A A PO4 0.463415 0.857143
56 V3L 0.461538 0.896104
57 2A5 0.46087 0.85
58 AT4 0.460177 0.886076
59 A1R 0.459016 0.841463
60 4AD 0.459016 0.875
61 ADQ 0.459016 0.897436
62 OVE 0.458716 0.8375
63 OMR 0.458647 0.813953
64 PPS 0.457627 0.811765
65 AD9 0.456897 0.897436
66 CA0 0.45614 0.897436
67 M33 0.45614 0.884615
68 ADJ 0.455882 0.879518
69 A3P 0.455357 0.894737
70 ACP 0.452174 0.897436
71 ENP 0.451613 0.85
72 UP5 0.451128 0.948052
73 SRP 0.45 0.8625
74 ANP 0.449153 0.897436
75 ACQ 0.449153 0.897436
76 PRX 0.448276 0.82716
77 A3R 0.447154 0.841463
78 5AL 0.445378 0.884615
79 7D4 0.443478 0.8375
80 ADX 0.443478 0.811765
81 6YZ 0.438017 0.897436
82 A 0.436364 0.894737
83 AMP 0.436364 0.894737
84 4TC 0.433824 0.924051
85 7D3 0.433628 0.8375
86 DCA 0.433566 0.788889
87 ETB 0.433566 0.797753
88 BIS 0.433071 0.864198
89 1ZZ 0.433071 0.802326
90 00A 0.432 0.864198
91 ATF 0.429752 0.886076
92 DQV 0.428571 0.934211
93 0T1 0.427586 0.788889
94 5SV 0.427419 0.788235
95 8QN 0.427419 0.884615
96 3AM 0.427273 0.857143
97 N01 0.426573 0.884615
98 PR8 0.425197 0.811765
99 LAD 0.425197 0.821429
100 WAQ 0.425197 0.841463
101 DTP 0.425 0.8375
102 AMO 0.424 0.886076
103 PAJ 0.424 0.843373
104 APC 0.423729 0.886076
105 UPA 0.423358 0.935897
106 48N 0.422222 0.853659
107 FYA 0.421875 0.860759
108 PTJ 0.421875 0.853659
109 CNA 0.421429 0.910256
110 PUA 0.42069 0.9125
111 DND 0.419118 0.910256
112 NXX 0.419118 0.910256
113 AV2 0.418033 0.848101
114 COA 0.417808 0.788889
115 3UK 0.417323 0.897436
116 OOB 0.416 0.909091
117 IVC 0.415584 0.78022
118 DAT 0.415254 0.8375
119 NDO 0.414966 0.897436
120 139 0.414286 0.901235
121 B5V 0.414062 0.886076
122 T99 0.413223 0.886076
123 TAT 0.413223 0.886076
124 3AT 0.413223 0.896104
125 YLB 0.413043 0.784091
126 62F 0.4125 0.823529
127 ABM 0.412281 0.848101
128 B5M 0.412214 0.875
129 YAP 0.412214 0.875
130 YLP 0.411765 0.784091
131 NB8 0.410853 0.853659
132 ME8 0.410853 0.802326
133 SON 0.410256 0.886076
134 DLL 0.409449 0.909091
135 AHX 0.409449 0.853659
136 CAO 0.409396 0.763441
137 30N 0.409396 0.72449
138 AMX 0.409396 0.797753
139 COS 0.409396 0.771739
140 7D5 0.409091 0.8125
141 4UW 0.408759 0.9125
142 F2R 0.408451 0.825581
143 APX 0.407692 0.841463
144 SRA 0.40708 0.85
145 CMX 0.406667 0.788889
146 SCO 0.406667 0.788889
147 TYM 0.405797 0.886076
148 COD 0.405594 0.777778
149 CA6 0.405229 0.70297
150 OXK 0.405229 0.771739
151 AP2 0.405172 0.886076
152 A12 0.405172 0.886076
153 9SN 0.40458 0.853659
154 LAQ 0.404412 0.802326
155 T5A 0.404255 0.914634
156 FAM 0.403974 0.771739
157 ACO 0.403974 0.763441
158 FCX 0.403974 0.763441
159 VO4 ADP 0.403226 0.860759
160 ADP VO4 0.403226 0.860759
161 YLC 0.402878 0.823529
162 1VU 0.402597 0.763441
163 B5Y 0.401515 0.875
164 FA5 0.401515 0.886076
165 HAX 0.401316 0.771739
166 AR6 AR6 0.4 0.871795
167 CAJ 0.4 0.771739
168 AFH 0.4 0.843373
169 APU 0.4 0.923077
170 A U 0.4 0.898734
171 TXA 0.4 0.886076
172 4UU 0.4 0.948052
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1F06; Ligand: NDP; Similar sites found with APoc: 570
This union binding pocket(no: 1) in the query (biounit: 1f06.bio3) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV None
2 3HCH RSM None
3 1SQL GUN None
4 2GCG NDP 0.9375
5 2GCG DGY 0.9375
6 5AYV NAP 0.970874
7 5AYV KPL 0.970874
8 4YCA NDP 1.02041
9 1QMG APX 1.25
10 3C1O NAP 1.25
11 3ULK NDP 1.5625
12 2HHP FLC 1.5625
13 1P0F NAP 1.5625
14 2HJR APR 1.5625
15 4E5N NAD 1.5625
16 3ZNN 4WL 1.5625
17 3ZNN FAD 1.5625
18 1SOW NAD 1.5625
19 3I0O SMI 1.5625
20 3O9Z NAD 1.60256
21 5EES NAP 1.61943
22 6AA8 NAD 1.65563
23 2PV7 NAD 1.67785
24 5BSH PRO 1.80505
25 1YQD NAP 1.875
26 1LVL NAD 1.875
27 6C4N NAP 1.875
28 9LDT NAD 1.875
29 5O9F 9ON 1.875
30 5O9F NAD 1.875
31 5FI3 NAP 1.875
32 1LDM NAD 1.875
33 1Z82 NDP 1.875
34 1KOL NAD 1.875
35 9LDB NAD 1.875
36 2IID FAD 1.875
37 2IID PHE 1.875
38 5VE5 GSH 1.875
39 5G3U ITW 1.875
40 4B63 NAP 1.875
41 4B63 ORN 1.875
42 4B63 FAD 1.875
43 4AP3 FAD 1.875
44 4AP3 NAP 1.875
45 5MZI FAD 1.875
46 5MZI FYK 1.875
47 4EDF UPG 1.875
48 5ZI9 FLC 1.92308
49 1YJQ NAP 1.9802
50 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 2.04082
51 1LUA NAP 2.09059
52 3ITJ CIT 2.1875
53 1SJD NPG 2.1875
54 5GSN NAP 2.1875
55 5U97 PIT 2.1875
56 6C4T NA7 2.1875
57 1GZ4 ATP 2.1875
58 4MP8 MLI 2.1875
59 4MP8 NAD 2.1875
60 2O4C NAD 2.1875
61 5SXS NIZ 2.1875
62 5MDH NAD 2.1875
63 1B8U NAD 2.1875
64 5J5Z FAD 2.1875
65 1TZJ A3B 2.1875
66 1YKJ PHB 2.1875
67 1YKJ FAD 2.1875
68 2C9O ADP 2.1875
69 3JYN NDP 2.1875
70 1F8F NAD 2.1875
71 3AXB PRO 2.1875
72 4MDH NAD 2.1875
73 2Z48 A2G 2.1875
74 3AXB FAD 2.1875
75 3T31 FAD 2.1875
76 3T31 DCQ 2.1875
77 1Q0H NDP 2.1875
78 1GQ2 NAP 2.1875
79 6CD1 PLG 2.1875
80 1KEV NDP 2.1875
81 2GMV PEP 2.1875
82 4JDR FAD 2.1875
83 6CD1 PLS 2.1875
84 1P77 ATR 2.20588
85 1DIG NAP 2.28758
86 1VI2 NAD 2.33333
87 3Q3C NAD 2.34114
88 4YAC NAI 2.3569
89 1NE7 AGP 2.42215
90 2JAP J01 2.42915
91 1NPD NAD 2.43056
92 4RDH AMP 2.43056
93 4RDI ATP 2.43056
94 3WLE NAD 2.5
95 3C7A NAD 2.5
96 5A1T NAI 2.5
97 1U25 IHS 2.5
98 3SQP FAD 2.5
99 5A1T OXM 2.5
100 1U26 IHS 2.5
101 5Z21 NAI 2.5
102 5A1S FLC 2.5
103 2XVE FAD 2.5
104 3A06 NDP 2.5
105 2QRK AMP 2.5
106 3ETG GLU 2.5
107 2E5V FAD 2.5
108 3ETG NDP 2.5
109 1LTH NAD 2.50784
110 3RGG AIR 2.51572
111 1LDN NAD 2.53165
112 2HK9 ATR 2.54545
113 2HK9 NAP 2.54545
114 5KKA 6V0 2.5641
115 2AG8 NAP 2.6616
116 5Y8L HUI 2.71186
117 5Y8L NAD 2.71186
118 1M0S CIT 2.73973
119 2Q46 NAP 2.7668
120 2HMT NAI 2.77778
121 5OCQ CIT 2.80702
122 1U3U NAD 2.8125
123 1U3U BNF 2.8125
124 1X7D ORN 2.8125
125 1E3I CXF 2.8125
126 1BXG NAD 2.8125
127 1C1X NAD 2.8125
128 5A04 BGC 2.8125
129 1X7D NAD 2.8125
130 1BW9 NAD 2.8125
131 5DN9 NAD 2.8125
132 5BVA FAD 2.8125
133 5GUD NDP 2.8125
134 3WMX NAD 2.8125
135 5GUD 2IT 2.8125
136 1ZGS XMM 2.8125
137 5XWC NAP 2.8125
138 5XWC 2IT 2.8125
139 5XWC 8GL 2.8125
140 2QA1 FAD 2.8125
141 2BRY FAD 2.8125
142 5DOZ NDP 2.8125
143 5A04 NDP 2.8125
144 5TUF FAD 2.8125
145 5TUF TDC 2.8125
146 4UP3 NDP 2.86624
147 5U5N NAD 2.86738
148 6EL3 NAP 2.88714
149 5N6C NAD 3
150 3L9W AMP 3.125
151 1D1T NAD 3.125
152 1WDK NAD 3.125
153 2DFV NAD 3.125
154 6C4M NAP 3.125
155 3LJU IP9 3.125
156 3GFB NAD 3.125
157 1SC6 NAD 3.125
158 1SAY PYR 3.125
159 4KVL PLM 3.125
160 4J36 1HR 3.125
161 1J49 NAD 3.125
162 5YAP 8S0 3.125
163 5YAP NAI 3.125
164 3H9E NAD 3.125
165 1OMO NAD 3.125
166 4J36 FAD 3.125
167 1DSS NAD 3.125
168 2IYF UDP 3.125
169 6HKE MLT 3.14465
170 6HKE LMR 3.14465
171 5W6Y TRP 3.16456
172 1O6Z NAD 3.30033
173 3I6B KDO 3.33333
174 5OCM NAP 3.43643
175 4BVA NDP 3.4375
176 4RQU NAD 3.4375
177 2CDC XYP 3.4375
178 2CDC XYS 3.4375
179 1ZH8 NAP 3.4375
180 1CDO NAD 3.4375
181 1H2B NAJ 3.4375
182 5LD5 NAD 3.4375
183 2CDC NAP 3.4375
184 1GET NAP 3.4375
185 4XYB NDP 3.4375
186 2WPF FAD 3.4375
187 2WPF WPF 3.4375
188 3CGD NAD 3.4375
189 3CGD COA 3.4375
190 5U8U FAD 3.4375
191 2NPX NAD 3.4375
192 5VN0 NAI 3.4375
193 2GSD NAD 3.4375
194 4BVA T3 3.4375
195 2NAD NAD 3.4375
196 1D4D SIN 3.4375
197 4X9M FAD 3.4375
198 3UN3 G16 3.4375
199 1NAA 6FA 3.4375
200 1GET FAD 3.4375
201 1NAA ABL 3.4375
202 5JIB OIA 3.4375
203 3CGD FAD 3.4375
204 5EB4 FAD 3.4375
205 2PK3 A2R 3.4375
206 3OA2 NAD 3.45912
207 1H6C SIN 3.4642
208 1H6C NDP 3.4642
209 2P3V SRT 3.51562
210 4E13 NAD 3.53357
211 4D3F NAP 3.54839
212 3FXU TSU 3.60656
213 5EI3 5O8 3.68664
214 1NYT NAP 3.69004
215 1U1W 3HA 3.69128
216 2NVK NAP 3.75
217 2FZW NAD 3.75
218 1EBF NAD 3.75
219 2RAB NAD 3.75
220 3E70 GDP 3.75
221 4D86 ADP 3.75
222 4W6Z 8ID 3.75
223 4ZVV GN0 3.75
224 5ZI2 NAD 3.75
225 4ZVV NAD 3.75
226 1RM4 NDP 3.75
227 3KB6 NAD 3.75
228 1E1M FAD 3.75
229 1E1M NAP 3.75
230 5ZI2 ADP 3.75
231 3IHG FAD 3.75
232 3OJO NAD 3.75
233 4JB0 ENO 3.75
234 2DC1 NAD 3.81356
235 2DC1 CIT 3.81356
236 3GGO NAI 3.82166
237 3GGO ENO 3.82166
238 1NVT NAP 3.83275
239 2AHR NAP 3.861
240 4GKV NAD 3.86905
241 3VPH NAD 3.87097
242 3VPH OXM 3.87097
243 1RYD NDP 3.87597
244 4OM8 NAD 3.8835
245 5JE8 NAD 3.97351
246 4ODT GP1 Z9M 3.9823
247 5A96 GTP 4.01606
248 5OJL TXP 4.02685
249 3S5W NAP 4.0625
250 1HKU NAD 4.0625
251 5E4R NAP 4.0625
252 4XQC NAD 4.0625
253 5MB4 NAG 4.0625
254 2GLX NDP 4.0625
255 4XQC 13D 4.0625
256 4KP7 NAP 4.0625
257 5NUE NAD 4.0625
258 5KMS NAD 4.0625
259 4XDZ NDP 4.0625
260 5NUF NAD 4.0625
261 4KP7 1UQ 4.0625
262 4D04 FAD 4.0625
263 4D04 NAP 4.0625
264 2IZ1 ATR 4.0625
265 1EZ4 NAD 4.08805
266 3H8V ATP 4.10959
267 4MA7 P2Z 4.12844
268 3B1F NAD 4.13793
269 1WP4 NDP 4.15225
270 2CVZ NDP 4.15225
271 1I36 NAP 4.16667
272 3HAD NAD 4.22078
273 1MUU NAD 4.375
274 2GZ3 NAP 4.375
275 1CER NAD 4.375
276 1V6A TRE 4.375
277 5DP2 NAP 4.375
278 1MV8 NAD 4.375
279 4RVU NDP 4.375
280 4HA6 FAD 4.375
281 4L8V NAP 4.375
282 3UOY NAP 4.375
283 3UOY FAD 4.375
284 4YMZ 13P 4.38247
285 1UI0 URA 4.39024
286 2ZL7 FUC GAL NGA 4.40678
287 2BOS GLA GAL GLC NBU 4.41176
288 2BOS GLA GAL GLC 4.41176
289 5D4V SAH 4.47761
290 2NU8 COA 4.51389
291 4RJD TFP 4.54545
292 2AF6 BRU 4.65116
293 2B4D COA 4.67836
294 3K5I AIR 4.6875
295 1KJ8 GAR 4.6875
296 4EMI NAD 4.6875
297 4D79 ATP 4.6875
298 4MOP 2H5 4.6875
299 1ZPD CIT 4.6875
300 6AM8 TRP 4.6875
301 3GD4 NAD 4.6875
302 4OPC PGT 4.6875
303 4R84 CSF 4.6875
304 4OPC FDA 4.6875
305 2QZZ NAP 4.71698
306 2QZZ EMF 4.71698
307 1J5P NAD 4.74308
308 5XVH NAP 4.90196
309 4CQM NAP 4.91803
310 3BAZ NAP 5
311 3WGT FAD 5
312 4DPL NAP 5
313 3WGT QSC 5
314 3QDK QDK 5
315 5YU3 PRO 5
316 5YU3 NAD 5
317 4R5M NAP 5
318 2C7G FAD 5
319 3WQQ IB3 5
320 3WQQ NDP 5
321 2C7G ODP 5
322 4R5M 4NO 5
323 2A92 NAI 5
324 4LHD GLY 5
325 3WV8 ATP 5.04587
326 3I7V ATP 5.22388
327 1PL6 NAD 5.3125
328 2JHF NAD 5.3125
329 3CIF NAD 5.3125
330 2D2I NAP 5.3125
331 1LLU NAD 5.3125
332 1PL6 572 5.3125
333 5Z20 NAI 5.3125
334 3B20 NAD 5.3125
335 5CAE COA 5.3125
336 6CEP OXM 5.3125
337 6CEP NAD 5.3125
338 5JCM NAD 5.3125
339 3CIF G3H 5.3125
340 5JCM FAD 5.3125
341 5JCM ISD 5.3125
342 1J0X NAD 5.3125
343 5TXR PLP 5.3125
344 3GDN FAD 5.3125
345 3GDN HBX 5.3125
346 2HVW DCP 5.43478
347 1KYQ NAD 5.47445
348 1GV0 NAD 5.48387
349 1GUZ NAD 5.48387
350 2GNM MAN 5.55556
351 1Q8V MAN MAN MAN 5.55556
352 2PHR MAN MAN 5.55556
353 1Q8P MAN MMA 5.55556
354 2PHF MAN MAN 5.55556
355 1Q8Q MAN MMA 5.55556
356 2PHX MAN MAN MAN MAN 5.55556
357 2PHU MAN MAN MAN BMA MAN 5.55556
358 2PHT MAN MAN MAN BMA MAN 5.55556
359 5N2I NAP 5.60345
360 3TWO NDP 5.625
361 4WBD CIT 5.625
362 1IZC PYR 5.625
363 3RC1 NAP 5.625
364 2B4R NAD 5.625
365 2B4R AES 5.625
366 1LJ8 NAD 5.625
367 1M2W NAD 5.625
368 5JVB 2PO 5.71429
369 2VOH CIT 5.73248
370 3BY9 SIN 5.76923
371 5VKT NAP 5.80111
372 1V59 NAD 5.9375
373 1NVM NAD 5.9375
374 3L4S NAD 5.9375
375 1FUR MLT 5.9375
376 3HQ9 OXL 5.9375
377 3L4S 3PG 5.9375
378 1PN0 FAD 5.9375
379 1PN0 IPH 5.9375
380 2Q0L NAP 6.10932
381 1GAD NAD 6.25
382 2VYN NAD 6.25
383 1F8G NAD 6.25
384 3QV1 NAD 6.25
385 3UCL NAP 6.25
386 3UCL CYH 6.25
387 3UCL FAD 6.25
388 5MQ6 NDP 6.25
389 5TUK FAD 6.25
390 4PLT OXM 6.25
391 5UR0 NAD 6.25
392 4PLT NAI 6.25
393 5YRF GLC GLC 6.33803
394 5YRL GLC GLC 6.33803
395 1QPR PHT 6.33803
396 1DLJ UGA 6.46766
397 1DLJ NAI 6.46766
398 5JCA NDP 6.54008
399 3ICT ADP 6.5625
400 3ICS ADP 6.5625
401 3CMC NAD 6.5625
402 6F97 FAD 6.5625
403 1GTE FAD 6.5625
404 1VM6 NAD 6.57895
405 4I7E PEP 6.58307
406 1DRV A3D 6.59341
407 2RI1 GLP 6.80851
408 2EV9 NAP 6.84411
409 2EV9 SKM 6.84411
410 2OOR NAD 6.875
411 1HDG NAD 6.875
412 1MO9 FAD 6.875
413 4B7X NAP 6.875
414 1UXG NAD 7.11974
415 1UXG FUM 7.11974
416 4L50 D8X 7.14286
417 5Z2F NAP 7.16981
418 1VL1 CIT 7.1875
419 2GV8 NDP 7.1875
420 2O1V ADP 7.1875
421 1CF2 NAP 7.1875
422 4AT0 FAD 7.1875
423 5YRV 5AD 7.29927
424 5G4L NDP 7.34266
425 1LK7 DER 7.42358
426 5UAV TFB 7.5
427 5UAV NDP 7.5
428 4MIG G3F 7.5
429 2I3G NAP 7.5
430 1QO8 FAD 7.5
431 2Y6Q I7T 7.5
432 2DT5 NAD 7.58294
433 4YSX FAD 7.69231
434 6BVE PGA 7.7551
435 2BMZ XLM 7.80142
436 6F3N NAD 7.8125
437 6F3N ADN 7.8125
438 2DBZ NAP 7.8125
439 2VHW NAI 7.8125
440 2B5W NAP 7.8125
441 4A0S NAP 7.8125
442 6F3M NAD 7.8125
443 1RYI GOA 7.8125
444 3QWB NDP 7.8125
445 1RYI FAD 7.8125
446 2YYY NAP 7.8125
447 1A5Z NAD 7.83699
448 4ZGS NAD 8.125
449 2YVJ NAI 8.125
450 1PJS NAD 8.125
451 1O0S NAI 8.125
452 5AOV NAP 8.125
453 2YVF NAD 8.125
454 2YVF FAD 8.125
455 4KOA NDP 8.125
456 2J8Z NAP 8.125
457 5LX9 OLB 8.14332
458 1NBU PH2 8.40336
459 4XB2 NDP 8.4375
460 2ZJ1 NAD 8.4375
461 2ZJ1 ARJ 8.4375
462 4Z0H NAD 8.4375
463 4XB2 HSE 8.4375
464 5I39 FAD 8.4375
465 3F8D FAD 8.4375
466 5XJ7 87O 8.45771
467 1VL0 NAI 8.56164
468 4B4U NAP 8.58086
469 5TQZ GLC 8.66667
470 1XXR MAN 8.69565
471 5H81 NAP 8.75
472 1RM0 D6P 8.75
473 1RM0 NAI 8.75
474 4XDY NAI 8.87574
475 5X9D 80F 8.88158
476 6ER9 FAD 9.0625
477 6ER9 NAP 9.0625
478 2GAG FAD 9.09091
479 2GAG FOA 9.09091
480 5W3K NDP 9.375
481 5W3K 9TY 9.375
482 3FWN ATR 9.375
483 5TOW ADN 9.375
484 5TOW NAI 9.375
485 4YNU FAD 9.375
486 1VBO MAN MAN MAN 9.39597
487 4CJX NAP 9.40439
488 4JBI NDP 9.45946
489 3V1Y NAD 9.6875
490 1C0I FAD 9.6875
491 1C0I BE2 9.6875
492 1YKF NAP 9.6875
493 1JAY NAP 9.90566
494 6BII NAP 9.90991
495 1LSS NAD 10
496 4YUS FMN 10
497 5MIT NAP 10
498 5MIT FAD 10
499 1TB4 PEJ 10
500 4TSK NDP 10
501 1GR0 NAD 10
502 1HYE NAP 10.2236
503 4KQW NAP 10.3125
504 6A3J SOE 10.3125
505 6A3J NAI 10.3125
506 2CVQ NDP 10.3125
507 5KK4 44E 10.4167
508 5U5G NAP 10.5085
509 2ZE3 AKG 10.5455
510 1V8B NAD 10.625
511 1E5Q NDP 10.9375
512 1DJN ADP 10.9375
513 1O94 ADP 10.9375
514 5T9E NAP 11.0701
515 6GD6 EVB 11.1111
516 5CIC 51R 11.1111
517 1R37 NAD 11.25
518 1WPQ NAD 11.25
519 4OOE FOM 11.25
520 4OOE NDP 11.25
521 5T9F NAP 11.4391
522 5T9F TYR 11.4391
523 5X20 NAD 11.5385
524 1N9G NAP 11.5625
525 4WAS NAP 11.5625
526 4UP4 GAL NAG 11.5625
527 5TC4 NAD 11.7089
528 1PS9 NAP 11.875
529 2VWA PTY 11.8812
530 1LC3 NAD 11.9048
531 1FWV SGA MAG FUC 11.9403
532 4J4H NAI 11.9691
533 4J4H 1J1 11.9691
534 4JK3 NAD 11.9691
535 3AD8 PYC 12.1212
536 3AD8 FAD 12.1212
537 2F1K NAP 12.1864
538 5L95 AMP 12.5
539 5M67 3D1 12.8125
540 5M67 ADE 12.8125
541 5M67 NAD 12.8125
542 2ZB3 NDP 13.4375
543 1HYH NAD 13.5922
544 3NJ4 NAD 13.75
545 3NJ4 AFX 13.75
546 2CDU ADP 14.0625
547 2ZB4 5OP 14.375
548 2ZB4 NAP 14.375
549 2VT3 ATP 14.4186
550 3CTY FAD 14.4201
551 2BKA NDP 14.4628
552 1T36 ORN 14.6875
553 3OND NAD 14.6875
554 3OND ADN 14.6875
555 5EIN NAP 14.8148
556 2G5C NAD 14.9466
557 5YEC ATP 15
558 5FJN FAD 15.3125
559 5FJN BE2 15.3125
560 6A0S NDP 15.9639
561 6A0S HSE 15.9639
562 5NMX NAP 16.5625
563 4K7O EKZ 17.2619
564 1YS4 NAP 18.125
565 3ABI NAD 18.4375
566 2JBM SRT 18.7291
567 5ZZ6 ADP 19.7115
568 5ZZ6 NAD 19.7115
569 2WOR 2AN 26
570 3B1J NAD 28
Pocket No.: 2; Query (leader) PDB : 1F06; Ligand: 2NP; Similar sites found with APoc: 570
This union binding pocket(no: 2) in the query (biounit: 1f06.bio3) has 35 residues
No: Leader PDB Ligand Sequence Similarity
1 5NNT DPV None
2 3HCH RSM None
3 1SQL GUN None
4 2GCG NDP 0.9375
5 2GCG DGY 0.9375
6 5AYV NAP 0.970874
7 5AYV KPL 0.970874
8 4YCA NDP 1.02041
9 1QMG APX 1.25
10 3C1O NAP 1.25
11 3ULK NDP 1.5625
12 2HHP FLC 1.5625
13 1P0F NAP 1.5625
14 2HJR APR 1.5625
15 4E5N NAD 1.5625
16 3ZNN 4WL 1.5625
17 3ZNN FAD 1.5625
18 1SOW NAD 1.5625
19 3I0O SMI 1.5625
20 3O9Z NAD 1.60256
21 5EES NAP 1.61943
22 6AA8 NAD 1.65563
23 2PV7 NAD 1.67785
24 5BSH PRO 1.80505
25 1YQD NAP 1.875
26 1LVL NAD 1.875
27 6C4N NAP 1.875
28 9LDT NAD 1.875
29 5O9F 9ON 1.875
30 5O9F NAD 1.875
31 5FI3 NAP 1.875
32 1LDM NAD 1.875
33 1Z82 NDP 1.875
34 1KOL NAD 1.875
35 9LDB NAD 1.875
36 2IID FAD 1.875
37 2IID PHE 1.875
38 5VE5 GSH 1.875
39 5G3U ITW 1.875
40 4B63 NAP 1.875
41 4B63 ORN 1.875
42 4B63 FAD 1.875
43 4AP3 FAD 1.875
44 4AP3 NAP 1.875
45 5MZI FAD 1.875
46 5MZI FYK 1.875
47 4EDF UPG 1.875
48 5ZI9 FLC 1.92308
49 1YJQ NAP 1.9802
50 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 2.04082
51 1LUA NAP 2.09059
52 3ITJ CIT 2.1875
53 1SJD NPG 2.1875
54 5GSN NAP 2.1875
55 5U97 PIT 2.1875
56 6C4T NA7 2.1875
57 1GZ4 ATP 2.1875
58 4MP8 MLI 2.1875
59 4MP8 NAD 2.1875
60 2O4C NAD 2.1875
61 5SXS NIZ 2.1875
62 5MDH NAD 2.1875
63 1B8U NAD 2.1875
64 5J5Z FAD 2.1875
65 1TZJ A3B 2.1875
66 1YKJ PHB 2.1875
67 1YKJ FAD 2.1875
68 2C9O ADP 2.1875
69 3JYN NDP 2.1875
70 1F8F NAD 2.1875
71 3AXB PRO 2.1875
72 4MDH NAD 2.1875
73 2Z48 A2G 2.1875
74 3AXB FAD 2.1875
75 3T31 FAD 2.1875
76 3T31 DCQ 2.1875
77 1Q0H NDP 2.1875
78 1GQ2 NAP 2.1875
79 6CD1 PLG 2.1875
80 1KEV NDP 2.1875
81 2GMV PEP 2.1875
82 4JDR FAD 2.1875
83 6CD1 PLS 2.1875
84 1P77 ATR 2.20588
85 1DIG NAP 2.28758
86 1VI2 NAD 2.33333
87 3Q3C NAD 2.34114
88 4YAC NAI 2.3569
89 1NE7 AGP 2.42215
90 2JAP J01 2.42915
91 1NPD NAD 2.43056
92 4RDH AMP 2.43056
93 4RDI ATP 2.43056
94 3WLE NAD 2.5
95 3C7A NAD 2.5
96 5A1T NAI 2.5
97 1U25 IHS 2.5
98 3SQP FAD 2.5
99 5A1T OXM 2.5
100 1U26 IHS 2.5
101 5Z21 NAI 2.5
102 5A1S FLC 2.5
103 2XVE FAD 2.5
104 3A06 NDP 2.5
105 2QRK AMP 2.5
106 3ETG GLU 2.5
107 2E5V FAD 2.5
108 3ETG NDP 2.5
109 1LTH NAD 2.50784
110 3RGG AIR 2.51572
111 1LDN NAD 2.53165
112 2HK9 ATR 2.54545
113 2HK9 NAP 2.54545
114 5KKA 6V0 2.5641
115 2AG8 NAP 2.6616
116 5Y8L HUI 2.71186
117 5Y8L NAD 2.71186
118 1M0S CIT 2.73973
119 2Q46 NAP 2.7668
120 2HMT NAI 2.77778
121 5OCQ CIT 2.80702
122 1U3U NAD 2.8125
123 1U3U BNF 2.8125
124 1X7D ORN 2.8125
125 1E3I CXF 2.8125
126 1BXG NAD 2.8125
127 1C1X NAD 2.8125
128 5A04 BGC 2.8125
129 1X7D NAD 2.8125
130 1BW9 NAD 2.8125
131 5DN9 NAD 2.8125
132 5BVA FAD 2.8125
133 5GUD NDP 2.8125
134 3WMX NAD 2.8125
135 5GUD 2IT 2.8125
136 1ZGS XMM 2.8125
137 5XWC NAP 2.8125
138 5XWC 2IT 2.8125
139 5XWC 8GL 2.8125
140 2QA1 FAD 2.8125
141 2BRY FAD 2.8125
142 5DOZ NDP 2.8125
143 5A04 NDP 2.8125
144 5TUF FAD 2.8125
145 5TUF TDC 2.8125
146 4UP3 NDP 2.86624
147 5U5N NAD 2.86738
148 6EL3 NAP 2.88714
149 5N6C NAD 3
150 3L9W AMP 3.125
151 1D1T NAD 3.125
152 1WDK NAD 3.125
153 2DFV NAD 3.125
154 6C4M NAP 3.125
155 3LJU IP9 3.125
156 3GFB NAD 3.125
157 1SC6 NAD 3.125
158 1SAY PYR 3.125
159 4KVL PLM 3.125
160 4J36 1HR 3.125
161 1J49 NAD 3.125
162 5YAP 8S0 3.125
163 5YAP NAI 3.125
164 3H9E NAD 3.125
165 1OMO NAD 3.125
166 4J36 FAD 3.125
167 1DSS NAD 3.125
168 2IYF UDP 3.125
169 6HKE MLT 3.14465
170 6HKE LMR 3.14465
171 5W6Y TRP 3.16456
172 1O6Z NAD 3.30033
173 3I6B KDO 3.33333
174 5OCM NAP 3.43643
175 4BVA NDP 3.4375
176 4RQU NAD 3.4375
177 2CDC XYP 3.4375
178 2CDC XYS 3.4375
179 1ZH8 NAP 3.4375
180 1CDO NAD 3.4375
181 1H2B NAJ 3.4375
182 5LD5 NAD 3.4375
183 2CDC NAP 3.4375
184 1GET NAP 3.4375
185 4XYB NDP 3.4375
186 2WPF FAD 3.4375
187 2WPF WPF 3.4375
188 3CGD NAD 3.4375
189 3CGD COA 3.4375
190 5U8U FAD 3.4375
191 2NPX NAD 3.4375
192 5VN0 NAI 3.4375
193 2GSD NAD 3.4375
194 4BVA T3 3.4375
195 2NAD NAD 3.4375
196 1D4D SIN 3.4375
197 4X9M FAD 3.4375
198 3UN3 G16 3.4375
199 1NAA 6FA 3.4375
200 1GET FAD 3.4375
201 1NAA ABL 3.4375
202 5JIB OIA 3.4375
203 3CGD FAD 3.4375
204 5EB4 FAD 3.4375
205 2PK3 A2R 3.4375
206 3OA2 NAD 3.45912
207 1H6C SIN 3.4642
208 1H6C NDP 3.4642
209 2P3V SRT 3.51562
210 4E13 NAD 3.53357
211 4D3F NAP 3.54839
212 3FXU TSU 3.60656
213 5EI3 5O8 3.68664
214 1NYT NAP 3.69004
215 1U1W 3HA 3.69128
216 2NVK NAP 3.75
217 2FZW NAD 3.75
218 1EBF NAD 3.75
219 2RAB NAD 3.75
220 3E70 GDP 3.75
221 4D86 ADP 3.75
222 4W6Z 8ID 3.75
223 4ZVV GN0 3.75
224 5ZI2 NAD 3.75
225 4ZVV NAD 3.75
226 1RM4 NDP 3.75
227 3KB6 NAD 3.75
228 1E1M FAD 3.75
229 1E1M NAP 3.75
230 5ZI2 ADP 3.75
231 3IHG FAD 3.75
232 3OJO NAD 3.75
233 4JB0 ENO 3.75
234 2DC1 NAD 3.81356
235 2DC1 CIT 3.81356
236 3GGO NAI 3.82166
237 3GGO ENO 3.82166
238 1NVT NAP 3.83275
239 2AHR NAP 3.861
240 4GKV NAD 3.86905
241 3VPH NAD 3.87097
242 3VPH OXM 3.87097
243 1RYD NDP 3.87597
244 4OM8 NAD 3.8835
245 5JE8 NAD 3.97351
246 4ODT GP1 Z9M 3.9823
247 5A96 GTP 4.01606
248 5OJL TXP 4.02685
249 3S5W NAP 4.0625
250 1HKU NAD 4.0625
251 5E4R NAP 4.0625
252 4XQC NAD 4.0625
253 5MB4 NAG 4.0625
254 2GLX NDP 4.0625
255 4XQC 13D 4.0625
256 4KP7 NAP 4.0625
257 5NUE NAD 4.0625
258 5KMS NAD 4.0625
259 4XDZ NDP 4.0625
260 5NUF NAD 4.0625
261 4KP7 1UQ 4.0625
262 4D04 FAD 4.0625
263 4D04 NAP 4.0625
264 2IZ1 ATR 4.0625
265 1EZ4 NAD 4.08805
266 3H8V ATP 4.10959
267 4MA7 P2Z 4.12844
268 3B1F NAD 4.13793
269 1WP4 NDP 4.15225
270 2CVZ NDP 4.15225
271 1I36 NAP 4.16667
272 3HAD NAD 4.22078
273 1MUU NAD 4.375
274 2GZ3 NAP 4.375
275 1CER NAD 4.375
276 1V6A TRE 4.375
277 5DP2 NAP 4.375
278 1MV8 NAD 4.375
279 4RVU NDP 4.375
280 4HA6 FAD 4.375
281 4L8V NAP 4.375
282 3UOY NAP 4.375
283 3UOY FAD 4.375
284 4YMZ 13P 4.38247
285 1UI0 URA 4.39024
286 2ZL7 FUC GAL NGA 4.40678
287 2BOS GLA GAL GLC NBU 4.41176
288 2BOS GLA GAL GLC 4.41176
289 5D4V SAH 4.47761
290 2NU8 COA 4.51389
291 4RJD TFP 4.54545
292 2AF6 BRU 4.65116
293 2B4D COA 4.67836
294 3K5I AIR 4.6875
295 1KJ8 GAR 4.6875
296 4EMI NAD 4.6875
297 4D79 ATP 4.6875
298 4MOP 2H5 4.6875
299 1ZPD CIT 4.6875
300 6AM8 TRP 4.6875
301 3GD4 NAD 4.6875
302 4OPC PGT 4.6875
303 4R84 CSF 4.6875
304 4OPC FDA 4.6875
305 2QZZ NAP 4.71698
306 2QZZ EMF 4.71698
307 1J5P NAD 4.74308
308 5XVH NAP 4.90196
309 4CQM NAP 4.91803
310 3BAZ NAP 5
311 3WGT FAD 5
312 4DPL NAP 5
313 3WGT QSC 5
314 3QDK QDK 5
315 5YU3 PRO 5
316 5YU3 NAD 5
317 4R5M NAP 5
318 2C7G FAD 5
319 3WQQ IB3 5
320 3WQQ NDP 5
321 2C7G ODP 5
322 4R5M 4NO 5
323 2A92 NAI 5
324 4LHD GLY 5
325 3WV8 ATP 5.04587
326 3I7V ATP 5.22388
327 1PL6 NAD 5.3125
328 2JHF NAD 5.3125
329 3CIF NAD 5.3125
330 2D2I NAP 5.3125
331 1LLU NAD 5.3125
332 1PL6 572 5.3125
333 5Z20 NAI 5.3125
334 3B20 NAD 5.3125
335 5CAE COA 5.3125
336 6CEP OXM 5.3125
337 6CEP NAD 5.3125
338 5JCM NAD 5.3125
339 3CIF G3H 5.3125
340 5JCM FAD 5.3125
341 5JCM ISD 5.3125
342 1J0X NAD 5.3125
343 5TXR PLP 5.3125
344 3GDN FAD 5.3125
345 3GDN HBX 5.3125
346 2HVW DCP 5.43478
347 1KYQ NAD 5.47445
348 1GV0 NAD 5.48387
349 1GUZ NAD 5.48387
350 2GNM MAN 5.55556
351 1Q8V MAN MAN MAN 5.55556
352 2PHR MAN MAN 5.55556
353 1Q8P MAN MMA 5.55556
354 2PHF MAN MAN 5.55556
355 1Q8Q MAN MMA 5.55556
356 2PHX MAN MAN MAN MAN 5.55556
357 2PHU MAN MAN MAN BMA MAN 5.55556
358 2PHT MAN MAN MAN BMA MAN 5.55556
359 5N2I NAP 5.60345
360 3TWO NDP 5.625
361 4WBD CIT 5.625
362 1IZC PYR 5.625
363 3RC1 NAP 5.625
364 2B4R NAD 5.625
365 2B4R AES 5.625
366 1LJ8 NAD 5.625
367 1M2W NAD 5.625
368 5JVB 2PO 5.71429
369 2VOH CIT 5.73248
370 3BY9 SIN 5.76923
371 5VKT NAP 5.80111
372 1V59 NAD 5.9375
373 1NVM NAD 5.9375
374 3L4S NAD 5.9375
375 1FUR MLT 5.9375
376 3HQ9 OXL 5.9375
377 3L4S 3PG 5.9375
378 1PN0 FAD 5.9375
379 1PN0 IPH 5.9375
380 2Q0L NAP 6.10932
381 1GAD NAD 6.25
382 2VYN NAD 6.25
383 1F8G NAD 6.25
384 3QV1 NAD 6.25
385 3UCL NAP 6.25
386 3UCL CYH 6.25
387 3UCL FAD 6.25
388 5MQ6 NDP 6.25
389 5TUK FAD 6.25
390 4PLT OXM 6.25
391 5UR0 NAD 6.25
392 4PLT NAI 6.25
393 5YRF GLC GLC 6.33803
394 5YRL GLC GLC 6.33803
395 1QPR PHT 6.33803
396 1DLJ UGA 6.46766
397 1DLJ NAI 6.46766
398 5JCA NDP 6.54008
399 3ICT ADP 6.5625
400 3ICS ADP 6.5625
401 3CMC NAD 6.5625
402 6F97 FAD 6.5625
403 1GTE FAD 6.5625
404 1VM6 NAD 6.57895
405 4I7E PEP 6.58307
406 1DRV A3D 6.59341
407 2RI1 GLP 6.80851
408 2EV9 NAP 6.84411
409 2EV9 SKM 6.84411
410 2OOR NAD 6.875
411 1HDG NAD 6.875
412 1MO9 FAD 6.875
413 4B7X NAP 6.875
414 1UXG NAD 7.11974
415 1UXG FUM 7.11974
416 4L50 D8X 7.14286
417 5Z2F NAP 7.16981
418 1VL1 CIT 7.1875
419 2GV8 NDP 7.1875
420 2O1V