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Receptor
PDB id Resolution Class Description Source Keywords
1EJH 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE EIF4E/EIF4G PEPTIDE/7-METHYL-GDP MUS MUSCULUS EIF4E/EIF4GII PEPTIDE/7-METHYL-GDP TRANSLATION
Ref.: CAP-DEPENDENT TRANSLATION INITIATION IN EUKARYOTES REGULATED BY A MOLECULAR MIMIC OF EIF4G. MOL.CELL V. 3 707 1999
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
M7G A:1001;
B:1002;
C:1003;
D:1004;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
submit data
459.243 C11 H19 N5 O11 P2 CN1CN...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1EJH 2.2 Å NON-ENZYME: TRANSCRIPT_TRANSLATE EIF4E/EIF4G PEPTIDE/7-METHYL-GDP MUS MUSCULUS EIF4E/EIF4GII PEPTIDE/7-METHYL-GDP TRANSLATION
Ref.: CAP-DEPENDENT TRANSLATION INITIATION IN EUKARYOTES REGULATED BY A MOLECULAR MIMIC OF EIF4G. MOL.CELL V. 3 707 1999
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1EJH - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
70% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 247 families.
1 5EHC - 5NX C21 H20 Cl N6 O7 c1cc(cc(c1....
2 5EI3 Kd = 56.5 uM 5O8 C18 H20 F3 N6 O6 S c1ccc(cc1)....
3 1EJH - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
50% Homology Family (3)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 5EHC - 5NX C21 H20 Cl N6 O7 c1cc(cc(c1....
2 5EI3 Kd = 56.5 uM 5O8 C18 H20 F3 N6 O6 S c1ccc(cc1)....
3 1EJH - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: M7G; Similar ligands found: 11
No: Ligand ECFP6 Tc MDL keys Tc
1 M7G 1 1
2 MGT 0.910256 1
3 M7M 0.541667 0.963855
4 G8D 0.537634 0.914634
5 TPG 0.525 0.920455
6 8GT 0.494845 0.914634
7 CDP 0.43617 0.829268
8 UDP 0.430108 0.780488
9 8GM 0.412371 0.902439
10 8OD 0.411765 0.77907
11 8GD 0.407767 0.872093
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1EJH; Ligand: M7G; Similar sites found with APoc: 87
This union binding pocket(no: 1) in the query (biounit: 1ejh.bio2) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 1N7G NDP 1.57895
2 4M52 FAD 1.57895
3 4MN7 SME 2.01342
4 5NA1 FAD 2.10526
5 2Z3U CRR 2.10526
6 2FV5 541 2.10526
7 5IN4 NAP 2.63158
8 5IN4 GDP 2.63158
9 5IN4 6CK 2.63158
10 2WOX NDP 2.63158
11 2GLX NDP 2.63158
12 1SJD NPG 2.63158
13 6FCH PRP 2.80899
14 1MO9 KPC 3.15789
15 1MO9 FAD 3.15789
16 2QE0 NAP 3.15789
17 4G19 GSH 3.15789
18 5C1P ADP 3.15789
19 2VVT DGL 3.15789
20 1R4W GSH 3.15789
21 5DX9 T6P 3.15789
22 5UCD NAP 3.68421
23 1G27 BB1 4.16667
24 3O84 HTJ 4.21053
25 5KMS NAD 4.21053
26 5KMS FAD 4.21053
27 1GET FAD 4.21053
28 1GET NAP 4.21053
29 5JWC FAD 4.21053
30 1XNK XS2 4.21053
31 2VVM FAD 4.21053
32 3JSX FAD 4.21053
33 3E3U NVC 4.21053
34 1YZX GSF 4.21053
35 1Q1R FAD 4.73684
36 2FZH DH1 4.73684
37 3T7S SAM 4.73684
38 3WDM ADN 4.73684
39 3DFR NDP 4.93827
40 3RNM FAD 5.17241
41 2RAB NAD 5.26316
42 1J3I NDP 5.26316
43 1PJS NAD 5.26316
44 1DR1 NAP 5.29101
45 1DR1 HBI 5.29101
46 4FWE FAD 5.78947
47 1NVT NAP 5.78947
48 5U8U FAD 5.78947
49 5AK8 ALA ARG 5.78947
50 5X5U NAD 5.78947
51 5A04 NDP 5.78947
52 5A04 BGC 5.78947
53 4EMJ FAD 6.31579
54 5VN0 NAI 6.31579
55 2CDU FAD 6.31579
56 5VN0 FAD 6.31579
57 1JQ9 PHE LEU SER TYR LYS 6.61157
58 5MGD GLC GAL GAL 6.84211
59 4JJF N2I 6.84211
60 4JJF FE9 6.84211
61 3COW 52H 6.84211
62 5MWY YNU 6.84211
63 5ECP ATP 7.36842
64 5ECP JAA 7.36842
65 3NTA FAD 7.36842
66 3IA4 NDP 7.40741
67 5KVA SAM 7.89474
68 4TWP AXI 8.42105
69 3WLV AZA 8.42105
70 4GUT FAD 8.87097
71 4GUS FAD 8.87097
72 2X3F APC 9.47368
73 4HK8 XYP XYP XYP XYP XYP XYP 10.0529
74 2WPF FAD 10.5263
75 2WPF WPF 10.5263
76 5WM2 AMP 10.5263
77 5WM2 SAL 10.5263
78 2C6Q NDP 12.1053
79 3AB1 FAD 12.1053
80 1LF9 ACR 13.1579
81 5N58 93W 13.6842
82 6BKA FMN 13.6842
83 2Z3Y F2N 31.0526
84 1VAY AZA 31.25
85 2VK4 TPP 31.25
86 3HIW C2X 37.5
87 4X7G 3Y8 37.5
Pocket No.: 2; Query (leader) PDB : 1EJH; Ligand: M7G; Similar sites found with APoc: 38
This union binding pocket(no: 2) in the query (biounit: 1ejh.bio4) has 9 residues
No: Leader PDB Ligand Sequence Similarity
1 2TPS TPS 2.10526
2 1GPJ CIT 2.10526
3 2P0D I3P 2.32558
4 2ZW5 COA 2.63158
5 3N26 ARG 2.63158
6 3GE7 AFQ 3.15789
7 2Z8G GLC GLC BGC 3.15789
8 2F5Z FAD 3.15789
9 2ZFU SAH 3.15789
10 1FBL HTA 3.15789
11 4TM3 FAD 4.21053
12 3JSX CC2 4.21053
13 5ESO TDP 4.73684
14 5ESO ISC 4.73684
15 3ICR FAD 5.26316
16 1YY5 FAD 5.26316
17 1J3I WRA 5.26316
18 1EU1 MGD 5.78947
19 1T90 NAD 5.78947
20 4EMI FAD 6.31579
21 6HH6 A3R 6.31579
22 5L7G 6QE 6.84211
23 5HCV 60R 6.84211
24 4EIL NDP 7.36842
25 3NT6 FAD 7.36842
26 3NTD FAD 7.36842
27 1ZUA TOL 7.89474
28 1ZUA NAP 7.89474
29 1TLL NAP 7.89474
30 2W9S NDP 8.07453
31 3QT6 2P0 8.94737
32 1RLZ NAD 9.47368
33 2YVJ FAD 10.0917
34 3IHZ FK5 11.1111
35 4LAE NAP 11.976
36 4LAE 1VM 11.976
37 5LLT DND 37.5
38 3SQG TP7 37.5
Pocket No.: 3; Query (leader) PDB : 1EJH; Ligand: M7G; Similar sites found with APoc: 39
This union binding pocket(no: 3) in the query (biounit: 1ejh.bio1) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 4QRH 0O2 None
2 3WBF API 2.63158
3 3WBF NAP 2.63158
4 1PVN MZP 2.65957
5 2YVF FAD 3.15789
6 4Y7U 2KH 3.15789
7 6GL8 F3Q 3.48837
8 5XGX DAS DLY 3.68421
9 1ZK7 FAD 4.73684
10 2HNK SAH 4.73684
11 3ICS FAD 5.26316
12 3ICT FAD 5.26316
13 4DP3 NDP 5.26316
14 4M26 ZZU 5.26316
15 4M26 SIN 5.26316
16 2HQM FAD 5.78947
17 4EMI NAD 6.31579
18 1YQZ FAD 6.31579
19 1QCI ADE 6.31579
20 2B9W FAD 6.84211
21 1HFS L04 7.5
22 3IQE F42 7.89474
23 3IQE H4M 7.89474
24 3GD4 FAD 8.94737
25 4BV6 FAD 8.94737
26 2YG3 FAD 8.94737
27 5GM1 SAH 9.47368
28 3F8D FAD 10.5263
29 5LS7 ACO 11.6788
30 1MZC FPP 12.6316
31 1MZC BNE 12.6316
32 4XIZ LPP 15.7143
33 3LAD FAD 15.7895
34 2QUN FUD 15.7895
35 2NPX NAD 31.25
36 2OBD 2OB 37.5
37 1Y8Q ATP 37.5
38 5LIA 6XN 37.5
39 4PJT 2YQ 43.75
Pocket No.: 4; Query (leader) PDB : 1EJH; Ligand: M7G; Similar sites found with APoc: 15
This union binding pocket(no: 4) in the query (biounit: 1ejh.bio3) has 10 residues
No: Leader PDB Ligand Sequence Similarity
1 3S5W FAD 2.10526
2 5J5Z FAD 2.63158
3 1B3X XYP XYP XYP 2.63158
4 1HXD BTN 3.15789
5 1S17 GNR 3.88889
6 5B47 PYR 4.73684
7 2HJ3 FAD 5.6
8 1QF5 RPL 5.78947
9 1QF5 GDP 5.78947
10 5D9O BGC BGC BGC BGC 9.47368
11 2IHK CSF 9.47368
12 4D7E FAD 11.0526
13 1Y3N BEM MAV 37.5
14 3OBK PBG 37.5
15 1BZL FAD 43.75
16 4R4U COA 50
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