Receptor
PDB id Resolution Class Description Source Keywords
1DZM 1.93 Å NON-ENZYME: SIGNAL_HORMONE PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH BENZOIC ACID PHENYLMETHYLESTER SUS SCROFA ODORANT BINDING PROTEIN LIPOCALINS
Ref.: COMPLEXES OF PORCINE ODORANT BINDING PROTEIN WITH ODORANT MOLECULES BELONGING TO DIFFERENT CHEMICAL CLASSES J.MOL.BIOL. V. 300 127 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
BZM A:600;
B:600;
Valid;
Valid;
none;
none;
ic50 = 3.9 uM
212.244 C14 H12 O2 c1ccc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1DZK 1.48 Å NON-ENZYME: SIGNAL_HORMONE PORCINE ODORANT BINDING PROTEIN COMPLEXED WITH PYRAZINE (2-ISOBUTYL-3-METOXYPYRAZINE) SUS SCROFA LIPOCALIN TRANSPORT OLFACTION SENSORY TRANSDUCTION
Ref.: COMPLEXES OF PORCINE ODORANT BINDING PROTEIN WITH O MOLECULES BELONGING TO DIFFERENT CHEMICAL CLASSES J.MOL.BIOL. V. 300 127 2000
Members (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 286 families.
1 1HQP - PRZ C9 H14 N2 O CC(C)Cc1c(....
2 1DZP ic50 = 3.6 uM BZQ C13 H10 O c1ccc(cc1)....
3 1E00 ic50 = 0.8 uM DHM C10 H20 O C[C@H](CCC....
4 1E06 ic50 = 2.5 uM IPB C10 H14 O Cc1ccc(c(c....
5 1DZJ ic50 = 1.3 uM SES C10 H18 N2 Se CCCCc1c([s....
6 1DZM ic50 = 3.9 uM BZM C14 H12 O2 c1ccc(cc1)....
7 1E02 ic50 = 0.7 uM UNA C11 H22 O CCCCCCCCCC....
8 1DZK Kd = 0.8 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
70% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 209 families.
1 1HQP - PRZ C9 H14 N2 O CC(C)Cc1c(....
2 1DZP ic50 = 3.6 uM BZQ C13 H10 O c1ccc(cc1)....
3 1E00 ic50 = 0.8 uM DHM C10 H20 O C[C@H](CCC....
4 1E06 ic50 = 2.5 uM IPB C10 H14 O Cc1ccc(c(c....
5 1DZJ ic50 = 1.3 uM SES C10 H18 N2 Se CCCCc1c([s....
6 1DZM ic50 = 3.9 uM BZM C14 H12 O2 c1ccc(cc1)....
7 1E02 ic50 = 0.7 uM UNA C11 H22 O CCCCCCCCCC....
8 1DZK Kd = 0.8 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
50% Homology Family (32)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 174 families.
1 1PBO - SES C10 H18 N2 Se CCCCc1c([s....
2 1G85 Kd = 3.3 uM 3OL C8 H16 O CCCCC[C@H]....
3 1GT4 Kd = 0.3 uM UNA C11 H22 O CCCCCCCCCC....
4 1GT1 Kd = 1.2 uM 3OM C8 H16 O CCCCC[C@@H....
5 2HLV - LIK C12 H20 O2 CCCCC(=C)C....
6 1GT3 Kd = 1.2 uM 3OM C8 H16 O CCCCC[C@@H....
7 1GT5 Kd = 0.8 uM BZQ C13 H10 O c1ccc(cc1)....
8 1HN2 Kd = 3.3 uM 3OL C8 H16 O CCCCC[C@H]....
9 1JV4 - TZL C7 H11 N S CC[C@@H](C....
10 1ZNE - HE2 C6 H14 O CCCCCCO
11 1ZNL - DE1 C10 H22 O CCCCCCCCCC....
12 2DM5 Kd = 1011.8 uM ODI C8 H18 O2 C(CCCCO)CC....
13 1QY1 Kd = 0.3 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
14 1ZND - PE9 C5 H12 O CCCCCO
15 1ZNG - HE4 C7 H16 O CCCCCCCO
16 1QY2 Kd = 1.8 uM IPZ C8 H12 N2 O CC(C)c1c(n....
17 2NND Kd = 0.87 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
18 1MUP - TZL C7 H11 N S CC[C@@H](C....
19 1YP6 Kd = 0.47 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
20 3KFG - HTX C7 H14 O CCCCCC(=O)....
21 3KFI - 25R C6 H8 N2 Cc1cnc(cn1....
22 3KFF - XBT C7 H13 N S CC[C@@H](C....
23 3KFH - 2EH C8 H18 O CCCC[C@H](....
24 1HQP - PRZ C9 H14 N2 O CC(C)Cc1c(....
25 1DZP ic50 = 3.6 uM BZQ C13 H10 O c1ccc(cc1)....
26 1E00 ic50 = 0.8 uM DHM C10 H20 O C[C@H](CCC....
27 1E06 ic50 = 2.5 uM IPB C10 H14 O Cc1ccc(c(c....
28 1DZJ ic50 = 1.3 uM SES C10 H18 N2 Se CCCCc1c([s....
29 1DZM ic50 = 3.9 uM BZM C14 H12 O2 c1ccc(cc1)....
30 1E02 ic50 = 0.7 uM UNA C11 H22 O CCCCCCCCCC....
31 1DZK Kd = 0.8 uM PRZ C9 H14 N2 O CC(C)Cc1c(....
32 1I05 - LTL C8 H16 O2 CCC(=O)CCC....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: BZM; Similar ligands found: 3
No: Ligand ECFP6 Tc MDL keys Tc
1 BZM 1 1
2 0OM 0.608696 0.714286
3 J0Z 0.525 0.705882
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1DZK; Ligand: PRZ; Similar sites found with APoc: 1
This union binding pocket(no: 1) in the query (biounit: 1dzk.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 1I06 TZL 47.7707
Pocket No.: 2; Query (leader) PDB : 1DZK; Ligand: PRZ; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 2) in the query (biounit: 1dzk.bio2) has 18 residues
No: Leader PDB Ligand Sequence Similarity
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