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Receptor
PDB id Resolution Class Description Source Keywords
1DRB 1.96 Å EC: 1.5.1.3 CRYSTAL STRUCTURE OF UNLIGANDED ESCHERICHIA COLI DIHYDROFOLA REDUCTASE. LIGAND-INDUCED CONFORMATIONAL CHANGES AND COOPERB INDING ESCHERICHIA COLI OXIDOREDUCTASE
Ref.: CRYSTAL STRUCTURE OF UNLIGANDED ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE. LIGAND-INDUCED CONFORMATIO CHANGES AND COOPERATIVITY IN BINDING. BIOCHEMISTRY V. 30 2227 1991
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
CA B:620;
Part of Protein;
none;
submit data
40.078 Ca [Ca+2...
CL A:401;
B:605;
Invalid;
Invalid;
none;
none;
submit data
35.453 Cl [Cl-]
EOH A:900;
B:918;
Invalid;
Invalid;
none;
none;
submit data
46.068 C2 H6 O CCO
MTX A:161;
B:361;
Valid;
Valid;
none;
none;
submit data
454.439 C20 H22 N8 O5 CN(Cc...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DRC 1.9 Å EC: 1.5.1.3 INVESTIGATION OF THE FUNCTIONAL ROLE OF TRYPTOPHAN-22 IN ESC COLI DIHYDROFOLATE REDUCTASE BY SITE-DIRECTED MUTAGENESIS ESCHERICHIA COLI OXIDOREDUCTASE
Ref.: INVESTIGATION OF THE FUNCTIONAL ROLE OF TRYPTOPHAN-ESCHERICHIA COLI DIHYDROFOLATE REDUCTASE BY SITE-DI MUTAGENESIS. BIOCHEMISTRY V. 30 11092 1991
Members (77)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 28 families.
1 4QLG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 4RGC - FOL C19 H19 N7 O6 c1cc(ccc1C....
3 5UIP - 8DM C12 H14 N2 O5 c1cc(ccc1C....
4 5Z6J - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 1RB2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 1RA9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
7 3QYL Ki = 1 uM 7ME C9 H14 N4 C[C@H]1CCc....
8 1RA1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
9 1RX6 - DDF C21 H25 N5 O6 c1cc(ccc1C....
10 1JOM - FFO C20 H23 N7 O7 c1cc(ccc1C....
11 2D0K Kd = 9.51 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
12 1DRA - MTX C20 H22 N8 O5 CN(Cc1cnc2....
13 1RC4 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
14 5Z6M - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
15 2ANQ ic50 = 0.075 uM C1A C14 H22 N8 S2 [H]/N=C(/N....
16 4PSY - FOL C19 H19 N7 O6 c1cc(ccc1C....
17 4KJJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
18 5CCC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
19 3QYO Ki = 7 uM Q24 C8 H8 N4 c1ccc2c(c1....
20 6DFR Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
21 4P68 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
22 1RX1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
23 1TDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
24 3OCH - 2MX C49 H62 N18 O8 CN(Cc1cnc2....
25 7DFR - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
26 4PSS - FOL C19 H19 N7 O6 c1cc(ccc1C....
27 5UJX - FOL C19 H19 N7 O6 c1cc(ccc1C....
28 2DRC Kd = 0.13 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
29 3R33 Ki = 0.8 uM 6ME C9 H14 N4 C[C@H]1CCc....
30 1RB3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
31 1DHI Kd = 55 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
32 1DYI - FOL C19 H19 N7 O6 c1cc(ccc1C....
33 1RA2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
34 4DFR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
35 4PST - FOL C19 H19 N7 O6 c1cc(ccc1C....
36 5UIO - 8DM C12 H14 N2 O5 c1cc(ccc1C....
37 3DAU - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
38 4NX7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
39 3QL3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
40 4PTH - FOL C19 H19 N7 O6 c1cc(ccc1C....
41 4GH8 Kd = 2.6 uM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
42 4P3R - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
43 3QL0 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
44 4P66 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
45 5W3Q - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
46 5CC9 - DDF C21 H25 N5 O6 c1cc(ccc1C....
47 1DRB - MTX C20 H22 N8 O5 CN(Cc1cnc2....
48 1RG7 Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
49 1DDS - MTX C20 H22 N8 O5 CN(Cc1cnc2....
50 1DRH Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
51 4QLF - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
52 1RH3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
53 1RA8 - FOL C19 H19 N7 O6 c1cc(ccc1C....
54 1DHJ Kd = 281 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
55 4PTJ - FOL C19 H19 N7 O6 c1cc(ccc1C....
56 1RX3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
57 5UIH Kd = 0.188 mM 8CV C10 H15 N5 [H]/N=C(/N....
58 5Z6F - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
59 1DYH - DZF C20 H20 N6 O6 c1cc(ccc1C....
60 1RX9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
61 3DRC Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
62 1DDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
63 1JOL - FFO C20 H23 N7 O7 c1cc(ccc1C....
64 1RX4 - DDF C21 H25 N5 O6 c1cc(ccc1C....
65 1RA3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
66 5Z6L - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
67 4P3Q - FOL C19 H19 N7 O6 c1cc(ccc1C....
68 4KJK - FOL C19 H19 N7 O6 c1cc(ccc1C....
69 1RF7 - DHF C19 H21 N7 O6 c1cc(ccc1C....
70 1RX5 - DDF C21 H25 N5 O6 c1cc(ccc1C....
71 4QLE - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
72 1RX2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
73 1RX7 - FOL C19 H19 N7 O6 c1cc(ccc1C....
74 4NX6 - FOL C19 H19 N7 O6 c1cc(ccc1C....
75 5Z6K - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
76 1DYJ - DDF C21 H25 N5 O6 c1cc(ccc1C....
77 4KJL - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
70% Homology Family (80)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 22 families.
1 4QLG - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 4RGC - FOL C19 H19 N7 O6 c1cc(ccc1C....
3 5UIP - 8DM C12 H14 N2 O5 c1cc(ccc1C....
4 5Z6J - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 1RB2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
6 1RA9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
7 3QYL Ki = 1 uM 7ME C9 H14 N4 C[C@H]1CCc....
8 1RA1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
9 1RX6 - DDF C21 H25 N5 O6 c1cc(ccc1C....
10 1JOM - FFO C20 H23 N7 O7 c1cc(ccc1C....
11 2D0K Kd = 9.51 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
12 1DRA - MTX C20 H22 N8 O5 CN(Cc1cnc2....
13 1RC4 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
14 5Z6M - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
15 2ANQ ic50 = 0.075 uM C1A C14 H22 N8 S2 [H]/N=C(/N....
16 4PSY - FOL C19 H19 N7 O6 c1cc(ccc1C....
17 4KJJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
18 5CCC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
19 3QYO Ki = 7 uM Q24 C8 H8 N4 c1ccc2c(c1....
20 6DFR Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
21 4P68 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
22 1RX1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
23 1TDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
24 3OCH - 2MX C49 H62 N18 O8 CN(Cc1cnc2....
25 7DFR - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
26 4PSS - FOL C19 H19 N7 O6 c1cc(ccc1C....
27 5UJX - FOL C19 H19 N7 O6 c1cc(ccc1C....
28 2DRC Kd = 0.13 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
29 3R33 Ki = 0.8 uM 6ME C9 H14 N4 C[C@H]1CCc....
30 1RB3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
31 1DHI Kd = 55 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
32 1DYI - FOL C19 H19 N7 O6 c1cc(ccc1C....
33 1RA2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
34 4DFR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
35 4PST - FOL C19 H19 N7 O6 c1cc(ccc1C....
36 5UIO - 8DM C12 H14 N2 O5 c1cc(ccc1C....
37 3DAU - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
38 4NX7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
39 3QL3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
40 4PTH - FOL C19 H19 N7 O6 c1cc(ccc1C....
41 4GH8 Kd = 2.6 uM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
42 4P3R - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
43 3QL0 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
44 4P66 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
45 5W3Q - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
46 5CC9 - DDF C21 H25 N5 O6 c1cc(ccc1C....
47 1DRB - MTX C20 H22 N8 O5 CN(Cc1cnc2....
48 1RG7 Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
49 1DDS - MTX C20 H22 N8 O5 CN(Cc1cnc2....
50 1DRH Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
51 4QLF - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
52 1RH3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
53 1RA8 - FOL C19 H19 N7 O6 c1cc(ccc1C....
54 1DHJ Kd = 281 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
55 4PTJ - FOL C19 H19 N7 O6 c1cc(ccc1C....
56 1RX3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
57 5UIH Kd = 0.188 mM 8CV C10 H15 N5 [H]/N=C(/N....
58 5Z6F - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
59 1DYH - DZF C20 H20 N6 O6 c1cc(ccc1C....
60 1RX9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
61 3DRC Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
62 1DDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
63 1JOL - FFO C20 H23 N7 O7 c1cc(ccc1C....
64 1RX4 - DDF C21 H25 N5 O6 c1cc(ccc1C....
65 1RA3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
66 5Z6L - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
67 4P3Q - FOL C19 H19 N7 O6 c1cc(ccc1C....
68 4KJK - FOL C19 H19 N7 O6 c1cc(ccc1C....
69 1RF7 - DHF C19 H21 N7 O6 c1cc(ccc1C....
70 1RX5 - DDF C21 H25 N5 O6 c1cc(ccc1C....
71 4QLE - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
72 1RX2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
73 1RX7 - FOL C19 H19 N7 O6 c1cc(ccc1C....
74 4NX6 - FOL C19 H19 N7 O6 c1cc(ccc1C....
75 5Z6K - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
76 1DYJ - DDF C21 H25 N5 O6 c1cc(ccc1C....
77 4KJL - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
78 3IA4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
79 4OR7 ic50 = 23 nM 25U C19 H18 N6 CCc1c(c(nc....
80 5DXV - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
50% Homology Family (242)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 14 families.
1 2FZJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
2 3K47 ic50 = 14.5 uM D09 C16 H16 N4 O2 C/C(=Cc1co....
3 3D80 - Q22 C21 H19 N7 O c1cc2c(cc1....
4 3D84 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
5 3K45 ic50 = 3.9 uM 51P C16 H16 N4 O2 C/C(=C/c1c....
6 1U70 Ki = 230 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
7 4QJC ic50 = 0.15 uM IXE C14 H11 F3 N6 CN(c1cc(c(....
8 4QHV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
9 2C2S ic50 = 0.15 uM 34B C8 H20 B10 N4 [BH]1234[B....
10 1U71 - MXA C17 H19 N5 O2 Cc1c(cnc2c....
11 4G95 Ki = 24.4 nM OAG C14 H12 Cl2 N6 c1cc(c(cc1....
12 1OHJ - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
13 3NZD - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
14 3GHV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
15 3NXV - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
16 1PD9 - CO4 C19 H24 N6 O3 Cc1c(cnc2c....
17 3NXX Ki = 11 uM D2D C19 H22 N4 O2 CC(C)C/C(=....
18 1DHF Kd = 0.111 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
19 3F8Y Ki = 8.3 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
20 3GYF ic50 = 12.3 nM 51P C16 H16 N4 O2 C/C(=C/c1c....
21 4KFJ ic50 = 60 nM 1R0 C25 H23 N5 O CCc1c(c(nc....
22 3S7A - 684 C25 H23 N7 O3 c1ccc2c(c1....
23 4M6K - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
24 4KAK ic50 = 1300 nM 06U C22 H23 N5 O CCc1c(c(nc....
25 1MVT - DTM C18 H22 N6 O3 CN(Cc1cc(c....
26 1DRF Kd = 0.111 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
27 1PD8 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
28 1S3V - TQD C19 H29 N5 O3 CN(CC1CCC2....
29 3NXT - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
30 3NU0 ic50 = 0.1 uM 3TU C24 H21 N5 O6 S c1cc(c2c(c....
31 4KEB ic50 = 45 nM 1QZ C26 H25 N5 O CCc1c(c(nc....
32 1BOZ ic50 = 8500 nM PRD C17 H20 N6 O2 C[N@](Cc1c....
33 1DLR Ki = 16.4 nM MXA C17 H19 N5 O2 Cc1c(cnc2c....
34 3GHW Kd = 0.02 uM GHW C19 H18 N4 O6 S2 Cc1c(c2c(s....
35 1HFR Ki = 790 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
36 4M6J - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
37 3F91 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
38 3NXO Ki = 0.83 uM D2B C18 H20 N4 O2 CC(C)/C(=C....
39 4DDR Ki = 2841 nM MMV C18 H24 N4 O4 CCc1c(c(nc....
40 3NXY - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
41 3F8Z Ki = 66 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
42 3S3V Ki = 593 nM TOP C14 H18 N4 O3 COc1cc(cc(....
43 1U72 Kd = 0.0034 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
44 4M6L - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
45 1DLS Ki = 10.9 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
46 1KMV - LII C18 H19 N5 O2 Cc1c(cnc2c....
47 1MVS - DTM C18 H22 N6 O3 CN(Cc1cc(c....
48 4KBN ic50 = 330 nM 25U C19 H18 N6 CCc1c(c(nc....
49 3NXR Ki = 11 uM D2D C19 H22 N4 O2 CC(C)C/C(=....
50 1S3W - TQT C17 H33 N5 C1CCC2C(C1....
51 3NTZ ic50 = 0.09 uM 3TZ C23 H21 N5 O6 S c1cc(c2c(c....
52 3GHC - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
53 1HFP Ki = 1036 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
54 2C2T ic50 = 15 uM 39B C8 H20 B9 N4 [H]1[BH]2[....
55 3GI2 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
56 2DHF - DZF C20 H20 N6 O6 c1cc(ccc1C....
57 1OHK - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
58 1HFQ Ki = 2.7 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
59 1S3U - TQD C19 H29 N5 O3 CN(CC1CCC2....
60 3N0H Ki = 617 nM TOP C14 H18 N4 O3 COc1cc(cc(....
61 3EIG Ki = 21 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
62 1KMS - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
63 3FS6 Ki = 230 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
64 3FQO ic50 = 0.67 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
65 3SRU Ki = 0.02 nM Q26 C23 H23 N5 O3 S CCOc1ccc(c....
66 3FY9 Ki = 3.5 nM XCF C19 H22 N4 O3 COc1cc(c2c....
67 4LEK Ki = 0.16 nM 1DN C20 H17 N7 O2 S COc1cc2c(c....
68 4TU5 ic50 = 18 nM 06W C22 H23 N5 O CCc1c(c(nc....
69 2W9G Kd = 8.1 nM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
70 3SRQ Ki = 0.48 nM Q19 C17 H16 N4 O Cc1cc2c(cc....
71 4LAG Ki = 0.011 nM 1VN C20 H16 Cl N7 S Cc1cc2c(cc....
72 3M08 Ki = 2.8 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
73 3FYW Ki = 0.23 nM I2H C19 H22 N4 O3 COc1cc(c2c....
74 3FRD - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
75 3F0Q Ki = 10 nM 52V C24 H26 N4 O Cc1cccc(c1....
76 2W9H Kd = 430 nM TOP C14 H18 N4 O3 COc1cc(cc(....
77 4LAE Ki = 0.002 nM 1VM C20 H17 N7 S Cc1cc2c(cc....
78 3FYV Ki = 0.22 nM XCF C19 H22 N4 O3 COc1cc(c2c....
79 3F0U ic50 = 0.19 uM 53R C22 H22 N4 O Cc1c(c(nc(....
80 3FQ0 ic50 = 0.068 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
81 3FQF ic50 = 0.75 uM 55V C19 H24 N4 O3 Cc1c(c(nc(....
82 3SRS Ki = 0.76 nM M23 C17 H17 Br N4 O CCOc1ccc(c....
83 3F0B ic50 = 0.061 uM 53R C22 H22 N4 O Cc1c(c(nc(....
84 3FRA Ka = 76000000 M^-1 I2H C19 H22 N4 O3 COc1cc(c2c....
85 5ISQ Ki = 158.3 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
86 4FGH Ki = 2.9 nM 0U6 C30 H34 N6 O3 CCc1c(c(nc....
87 3FRB Ka = 5800000 M^-1 TOP C14 H18 N4 O3 COc1cc(cc(....
88 3SRR Ki = 0.24 nM Q20 C18 H18 N4 O2 CCOc1ccc(c....
89 5JG0 ic50 = 0.01 uM UC9 C24 H22 N4 O4 CCc1c(c(nc....
90 3FQV ic50 = 0.77 uM 11F C22 H22 N4 O Cc1c(c(nc(....
91 5ISP Ki = 11.75 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
92 4LAH Ki = 0.096 nM 1VO C20 H17 N7 S Cc1cc2c(cc....
93 3SRW Ki = 0.026 nM Q27 C21 H20 N4 O CCOc1ccc2c....
94 3I8A Ki = 0.12 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
95 3M09 Ki = 0.9 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
96 4FGG Ki = 4.1 nM 0U5 C31 H36 N6 O3 CCCc1c(c(n....
97 3FRE Ki = 0.0006 uM TOP C14 H18 N4 O3 COc1cc(cc(....
98 5IST Ki = 3.89 nM U06 C23 H22 N4 O3 CCc1c(c(nc....
99 3FY8 Ki = 0.9 nM I2H C19 H22 N4 O3 COc1cc(c2c....
100 3SR5 Ki = 0.35 nM Q12 C17 H18 N4 O2 Cc1cc2c(cc....
101 1RA9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
102 3QYL Ki = 1 uM 7ME C9 H14 N4 C[C@H]1CCc....
103 1RA1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
104 1RX6 - DDF C21 H25 N5 O6 c1cc(ccc1C....
105 1JOM - FFO C20 H23 N7 O7 c1cc(ccc1C....
106 2D0K Kd = 9.51 uM FOL C19 H19 N7 O6 c1cc(ccc1C....
107 1DRA - MTX C20 H22 N8 O5 CN(Cc1cnc2....
108 1RC4 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
109 5Z6M - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
110 2ANQ ic50 = 0.075 uM C1A C14 H22 N8 S2 [H]/N=C(/N....
111 4PSY - FOL C19 H19 N7 O6 c1cc(ccc1C....
112 4KJJ - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
113 5CCC - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
114 3QYO Ki = 7 uM Q24 C8 H8 N4 c1ccc2c(c1....
115 6DFR Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
116 4P68 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
117 1RX1 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
118 1TDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
119 3OCH - 2MX C49 H62 N18 O8 CN(Cc1cnc2....
120 7DFR - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
121 4PSS - FOL C19 H19 N7 O6 c1cc(ccc1C....
122 5UJX - FOL C19 H19 N7 O6 c1cc(ccc1C....
123 2DRC Kd = 0.13 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
124 3R33 Ki = 0.8 uM 6ME C9 H14 N4 C[C@H]1CCc....
125 1RB3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
126 1DHI Kd = 55 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
127 1DYI - FOL C19 H19 N7 O6 c1cc(ccc1C....
128 1RA2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
129 4DFR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
130 4PST - FOL C19 H19 N7 O6 c1cc(ccc1C....
131 5UIO - 8DM C12 H14 N2 O5 c1cc(ccc1C....
132 3DAU - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
133 4NX7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
134 3QL3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
135 4PTH - FOL C19 H19 N7 O6 c1cc(ccc1C....
136 4GH8 Kd = 2.6 uM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
137 4P3R - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
138 3QL0 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
139 4P66 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
140 5W3Q - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
141 5CC9 - DDF C21 H25 N5 O6 c1cc(ccc1C....
142 1DRB - MTX C20 H22 N8 O5 CN(Cc1cnc2....
143 1RG7 Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
144 1DDS - MTX C20 H22 N8 O5 CN(Cc1cnc2....
145 1DRH Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
146 4QLF - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
147 1RH3 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
148 1RA8 - FOL C19 H19 N7 O6 c1cc(ccc1C....
149 1DHJ Kd = 281 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
150 4PTJ - FOL C19 H19 N7 O6 c1cc(ccc1C....
151 1RX3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
152 5UIH Kd = 0.188 mM 8CV C10 H15 N5 [H]/N=C(/N....
153 5Z6F - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
154 1DYH - DZF C20 H20 N6 O6 c1cc(ccc1C....
155 1RX9 Kd = 24 uM NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
156 3DRC Kd = 0.7 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
157 1DDR - MTX C20 H22 N8 O5 CN(Cc1cnc2....
158 1JOL - FFO C20 H23 N7 O7 c1cc(ccc1C....
159 1RX4 - DDF C21 H25 N5 O6 c1cc(ccc1C....
160 1RA3 - MTX C20 H22 N8 O5 CN(Cc1cnc2....
161 5Z6L - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
162 4P3Q - FOL C19 H19 N7 O6 c1cc(ccc1C....
163 4KJK - FOL C19 H19 N7 O6 c1cc(ccc1C....
164 1RF7 - DHF C19 H21 N7 O6 c1cc(ccc1C....
165 1RX5 - DDF C21 H25 N5 O6 c1cc(ccc1C....
166 4QLE - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
167 1RX2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
168 1RX7 - FOL C19 H19 N7 O6 c1cc(ccc1C....
169 4NX6 - FOL C19 H19 N7 O6 c1cc(ccc1C....
170 5Z6K - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
171 1DYJ - DDF C21 H25 N5 O6 c1cc(ccc1C....
172 4KJL - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
173 3IX9 Ki = 3.9 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
174 3DFR ic50 = 3 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
175 1M79 ic50 = 320 nM MQ1 C15 H14 N4 O2 COc1ccc(cc....
176 3QLR ic50 = 45 nM QLR C19 H24 N4 O3 CC[C@@H](C....
177 1AOE Ki = 0.22 nM GW3 C15 H19 N5 CCC(CC)n1c....
178 1IA3 ic50 = 8 nM TQ5 C18 H20 N4 S CC(C)(C)c1....
179 4HOF ic50 = 20 nM 18H C22 H22 N4 O Cc1c(c(nc(....
180 3QLW ic50 = 100 nM N22 C17 H20 N4 O2 CCc1c(c(nc....
181 1IA1 ic50 = 0.034 uM TQ3 C14 H12 N4 S c1ccc(cc1)....
182 3QLS ic50 = 33 nM 55V C19 H24 N4 O3 Cc1c(c(nc(....
183 1AI9 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
184 1IA4 ic50 = 0.13 uM TQ6 C18 H19 N5 O S c1cc2c(c(c....
185 4HOE ic50 = 36 nM 18G C23 H24 N4 O2 Cc1c(c(nc(....
186 1M7A ic50 = 9 nM MQU C15 H19 N5 O2 COCC(COC)n....
187 1M78 ic50 = 52 nM CLZ C8 H8 Cl N5 O2 c1cc2c(c(c....
188 1IA2 ic50 = 0.023 uM TQ4 C15 H14 N4 S Cc1ccc(cc1....
189 3QLZ ic50 = 15 nM QLZ C18 H22 N4 O2 CCCc1c(c(n....
190 3EEK ic50 = 0.61 nM 53S C23 H24 N4 O Cc1ccc(cc1....
191 3CSE ic50 = 8.2 nM N22 C17 H20 N4 O2 CCc1c(c(nc....
192 3QLX ic50 = 27 nM QLR C19 H24 N4 O3 CC[C@@H](C....
193 3EEJ ic50 = 7.3 nM 53R C22 H22 N4 O Cc1c(c(nc(....
194 3EEM ic50 = 5.5 nM 53V C24 H26 N4 O Cc1cccc(c1....
195 4HOG ic50 = 5.5 nM 18H C22 H22 N4 O Cc1c(c(nc(....
196 3IA4 - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
197 1DR6 - HBI C9 H13 N5 O3 C[C@@H]([C....
198 1DR1 - HBI C9 H13 N5 O3 C[C@@H]([C....
199 1DR3 - HBI C9 H13 N5 O3 C[C@@H]([C....
200 1DR4 - HBI C9 H13 N5 O3 C[C@@H]([C....
201 1DR7 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
202 1DR2 - TAP C21 H28 N7 O16 P3 S c1cc(c[n+]....
203 1DR5 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
204 8DFR - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
205 4ELG Ki = 6.9 nM 52J C28 H32 N6 O3 CC(C)C[C@H....
206 3DAT - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
207 3E0B ic50 = 0.89 uM N22 C17 H20 N4 O2 CCc1c(c(nc....
208 2QK8 ic50 ~ 20 nM MTX C20 H22 N8 O5 CN(Cc1cnc2....
209 4ELE Ki = 13.4 nM 31I C27 H30 N6 O3 CC(C)[C@H]....
210 4ELH Ki = 8.2 nM 53I C28 H30 N6 O3 CC(=C[C@@H....
211 3FL8 ic50 = 54 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
212 4ELF Ki = 9.4 nM 35I C27 H27 F3 N6 O3 COc1cc(cc(....
213 3FL9 ic50 = 77 mM TOP C14 H18 N4 O3 COc1cc(cc(....
214 1S3Y ic50 = 210 nM TQT C17 H33 N5 C1CCC2C(C1....
215 4IXG ic50 = 0.076 uM IXG C14 H14 N6 CN(c1ccccc....
216 2FZH ic50 = 0.049 nM DH1 C17 H22 N4 O4 COc1ccc(cc....
217 4CD2 - FOL C19 H19 N7 O6 c1cc(ccc1C....
218 3NZC - D2O C24 H25 N5 O2 Cc1c(cnc2c....
219 3NZA - D2K C22 H27 N5 O4 CCOC(=O)CC....
220 4G8Z Ki = 227 nM TOP C14 H18 N4 O3 COc1cc(cc(....
221 3NZ6 ic50 = 1.3 nM D2J C22 H27 N5 O4 Cc1c(cnc2c....
222 1CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
223 3NZB ic50 = 35 nM D2N C24 H31 N5 O4 CCOC(=O)CC....
224 3NZ9 ic50 = 6.5 nM D2K C22 H27 N5 O4 CCOC(=O)CC....
225 1DYR ic50 = 20 uM TOP C14 H18 N4 O3 COc1cc(cc(....
226 3TD8 ic50 = 1.2 nM D2R C22 H23 N5 O3 Cc1c(cnc2c....
227 1LY3 ic50 = 87 nM COG C18 H21 N5 O2 CN(Cc1cc(c....
228 3CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
229 1VJ3 ic50 = 0.17 uM TAB C23 H26 Cl N7 O2 CCc1c(c(nc....
230 1E26 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
231 1DAJ Ki = 6.5 nM MOT C20 H22 N6 O6 C[N@](Cc1c....
232 2FZI ic50 = 1 nM DH3 C19 H22 N4 O4 COc1cc(cc(....
233 4IXE - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
234 1KLK ic50 = 0.21 uM PMD C21 H17 N7 c1ccc2c(c1....
235 2CD2 - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
236 4IXF - NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
237 1LY4 ic50 = 76 nM COQ C17 H20 N6 O2 CN(Cc1cc(c....
238 4M7V Ki = 4.5 nM RAR C27 H30 N6 O3 CCC[C@H]1c....
239 4M7U - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
240 2W9S Kd = 2370 nM NDP C21 H30 N7 O17 P3 c1nc(c2c(n....
241 4OR7 ic50 = 23 nM 25U C19 H18 N6 CCc1c(c(nc....
242 5DXV - NAP C21 H28 N7 O17 P3 c1cc(c[n+]....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: MTX; Similar ligands found: 8
No: Ligand ECFP6 Tc MDL keys Tc
1 MTX 1 1
2 3BI 0.783505 0.884058
3 2MX 0.778947 0.924242
4 04J 0.663043 0.870968
5 MT1 0.632653 0.968254
6 MOT 0.534653 0.923077
7 COP 0.453782 0.815385
8 FOL 0.410714 0.779412
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DRC; Ligand: MTX; Similar sites found with APoc: 90
This union binding pocket(no: 1) in the query (biounit: 2drc.bio1) has 125 residues
No: Leader PDB Ligand Sequence Similarity
1 3KPE TM3 None
2 5NNT DPV None
3 4V1F BQ1 None
4 1HBK COA None
5 4RJD TFP None
6 5CHR 4NC None
7 2WW4 ADP 1.88679
8 1RJW ETF 1.88679
9 1LK7 DER 1.88679
10 2WOR 2AN 2
11 4RYV ZEA 2.58065
12 3KP6 SAL 2.64901
13 5C8W PCG 2.7972
14 1B4B ARG 2.8169
15 1NU4 MLA 3.09278
16 5LY1 PPI 3.14465
17 6G33 5ID 3.14465
18 1RL4 BL5 3.77358
19 2AWN ADP 3.77358
20 2BHW NEX 3.77358
21 5DX3 EST 3.77358
22 1MVN FMN 3.77358
23 3KC1 2T6 3.77358
24 5WGD EST 3.77358
25 6EOA FMN 3.77358
26 5DXE EST 3.77358
27 5HYR EST 3.77358
28 2IYA UDP 3.77358
29 3QKD HI0 3.77358
30 6BR8 6OU 4.40252
31 1DTL BEP 4.40252
32 3AI3 SOE 4.40252
33 2ACV UDP 4.40252
34 1T9D P22 4.40252
35 5WKC TP9 4.40252
36 2BS5 BGC GAL FUC 4.44444
37 3TDC 0EU 5.03145
38 2J0B UDP 5.03145
39 2OBM ADP 5.03145
40 3NOJ PYR 5.03145
41 2QV7 ADP 5.03145
42 4NTO 1PW 5.66038
43 1TV5 N8E 5.66038
44 2BCG GER 5.66038
45 5A96 GTP 5.66038
46 3QP8 HL0 5.66038
47 1NF8 BOG 6.28931
48 5NM7 GLY 6.28931
49 4OE4 NAD 6.28931
50 5AHO TLA 6.91824
51 1YBU APC 6.91824
52 2WOE AR6 6.91824
53 5URY PAM 7.53425
54 5EY0 GTP 7.54717
55 1CJW COT 7.54717
56 5M36 9SZ 7.89474
57 3B6C SDN 8.1761
58 4EKQ NPO 8.1761
59 2BJ4 OHT 8.1761
60 2A19 ANP 8.80503
61 4XT8 TMQ 9.43396
62 4XT8 NAP 9.43396
63 3CV2 COA 9.43396
64 4XFR CIT 9.43396
65 4IF4 BEF 9.43396
66 1TZJ A3B 9.43396
67 1XW6 GSH 9.43396
68 4TYT S3C 9.43396
69 3MG9 GHP 3MY 3FG GHP GHP OMY 3FG 10.0629
70 5E5U MLI 10.0629
71 4GLW NMN 10.0629
72 5YV5 ADP 10.0629
73 5XQL C2E 10.0629
74 4KVL PLM 10.0629
75 1YZX GSF 10.6918
76 5L2R MLA 11.3208
77 5LX9 OLB 11.3208
78 4HA9 NDP 11.9497
79 2Y69 CHD 11.9497
80 2HHP FLC 12.5786
81 5Z84 CHD 12.9252
82 5ZCO CHD 12.9252
83 5W97 CHD 12.9252
84 5AJU RP5 13.2075
85 3SDV 911 13.8365
86 3ITJ CIT 15.7233
87 5MOB A8S 15.7233
88 4G86 BNT 18.239
89 4UCC ZKW 18.8679
90 4OGQ 7PH 22.6415
Pocket No.: 2; Query (leader) PDB : 2DRC; Ligand: MTX; Similar sites found with APoc: 9
This union binding pocket(no: 2) in the query (biounit: 2drc.bio1) has 126 residues
No: Leader PDB Ligand Sequence Similarity
1 5TVI MYR None
2 4QO5 NAG 3.14465
3 1J78 OLA 3.77358
4 4TV1 36M 3.77358
5 3GPO APR 3.77358
6 6CB2 OLC 5.03145
7 3EYK EYK 5.03145
8 3SXN COA 6.28931
9 2JDU MFU 9.56522
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