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Receptor
PDB id Resolution Class Description Source Keywords
1D2E 1.94 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP BOS TAURUS G-PROTEIN BETA-BARREL RNA BINDING PROTEIN
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE MITOCHO EF-TU IN COMPLEX WITH GDP. J.MOL.BIOL. V. 297 421 2000
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GDP A:1301;
B:1302;
C:1303;
D:1304;
Valid;
Valid;
Valid;
Valid;
none;
none;
none;
none;
Kd = 1 uM
443.201 C10 H15 N5 O11 P2 c1nc2...
MG A:501;
B:502;
C:503;
D:504;
Part of Protein;
Part of Protein;
Part of Protein;
Part of Protein;
none;
none;
none;
none;
submit data
24.305 Mg [Mg+2...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
1D2E 1.94 Å NON-ENZYME: TRANSCRIPT_TRANSLATE CRYSTAL STRUCTURE OF MITOCHONDRIAL EF-TU IN COMPLEX WITH GDP BOS TAURUS G-PROTEIN BETA-BARREL RNA BINDING PROTEIN
Ref.: HIGH RESOLUTION CRYSTAL STRUCTURE OF BOVINE MITOCHO EF-TU IN COMPLEX WITH GDP. J.MOL.BIOL. V. 297 421 2000
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 291 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
70% Homology Family (18)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 5W76 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 5W7Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
4 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
7 6EZE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
9 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
10 4LC0 - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
11 1EXM - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
12 2C78 - PUL C47 H66 O13 C[C@@H]1[C....
13 1EFT - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
14 4LBV - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
15 4LBW - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
16 1HA3 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
17 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
18 5W75 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
50% Homology Family (9)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 2 families.
1 1D2E Kd = 1 uM GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
2 1DG1 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
3 2BVN - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
4 1EFC - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
5 6EZE - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
6 4H9G - 14J C5 H3 Br O3 c1cc(oc1C(....
7 4LBZ - GNP C10 H17 N6 O13 P3 c1nc2c(n1[....
8 4J0Q - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
9 5W75 - GDP C10 H15 N5 O11 P2 c1nc2c(n1[....
Polypharmacology
Similar Ligands
Ligand no: 1; Ligand: GDP; Similar ligands found: 161
No: Ligand ECFP6 Tc MDL keys Tc
1 GDP 1 1
2 GTP 0.909091 1
3 GP3 0.881579 0.973684
4 GNH 0.858974 0.986667
5 9GM 0.839506 0.973684
6 GNP 0.839506 0.973684
7 G 0.828947 0.986486
8 5GP 0.828947 0.986486
9 G1R 0.82716 0.986667
10 GCP 0.82716 0.973684
11 GSP 0.817073 0.948718
12 GAV 0.797619 0.961039
13 GMV 0.792683 0.973684
14 G2P 0.77381 0.961039
15 G2R 0.770115 0.961039
16 GP2 0.756098 0.961039
17 GDC 0.747253 0.961039
18 GKE 0.747253 0.961039
19 GDD 0.747253 0.961039
20 GPG 0.741573 0.961039
21 G3D 0.732558 0.986486
22 ALF 5GP 0.729412 0.888889
23 Y9Z 0.728261 0.902439
24 G5P 0.723404 0.973684
25 GFB 0.72043 0.961039
26 GTG 0.72043 0.936709
27 GDR 0.72043 0.961039
28 G4P 0.715909 0.986486
29 G3A 0.712766 0.973684
30 6CK 0.712766 0.936709
31 GDP AF3 0.7 0.888889
32 ALF GDP 0.7 0.888889
33 GDP ALF 0.7 0.888889
34 YGP 0.698925 0.901235
35 GKD 0.697917 0.961039
36 JB2 0.697917 0.961039
37 GDX 0.690722 0.973684
38 GPD 0.690722 0.925
39 GMP 0.684211 0.88
40 0O2 0.666667 0.986486
41 JB3 0.656863 0.948718
42 NGD 0.650485 0.961039
43 DGI 0.636364 0.923077
44 GDP 7MG 0.636364 0.911392
45 U2G 0.634615 0.936709
46 GPX 0.634409 0.946667
47 G G 0.632653 0.948052
48 IDP 0.632184 0.972973
49 2MD 0.632075 0.891566
50 CAG 0.62963 0.880952
51 CG2 0.622642 0.936709
52 FEG 0.619048 0.879518
53 MGD 0.614679 0.891566
54 ZGP 0.613208 0.869048
55 GH3 0.612903 0.973333
56 3GP 0.611765 0.946667
57 MD1 0.607143 0.891566
58 PGD 0.59292 0.925
59 DGT 0.591398 0.923077
60 BGO 0.588785 0.924051
61 TPG 0.582609 0.840909
62 DBG 0.582609 0.948718
63 2GP 0.574713 0.96
64 FE9 0.570175 0.776596
65 GCP G 0.56 0.921053
66 A G 0.553571 0.935065
67 G A A A 0.553571 0.923077
68 MGP 0.553191 0.961039
69 U A G G 0.548673 0.935065
70 G4M 0.548387 0.880952
71 6G0 0.547368 0.961039
72 G1R G1R 0.542373 0.924051
73 P2G 0.527473 0.883117
74 PGD O 0.525 0.850575
75 ADP 0.522222 0.92
76 R5I 0.520833 0.946667
77 R7I 0.520833 0.946667
78 GGM 0.517544 0.901235
79 DGP 0.516484 0.910256
80 DG 0.516484 0.910256
81 P1G 0.516129 0.871795
82 G U 0.513274 0.9
83 G1G 0.508475 0.925
84 IMP 0.505495 0.959459
85 AKW 0.504425 0.890244
86 G C 0.504348 0.9
87 GPC 0.491525 0.879518
88 G7M 0.483871 0.948052
89 6AD 0.479592 0.841463
90 ATP 0.473684 0.92
91 HEJ 0.473684 0.92
92 G2Q 0.471154 0.961039
93 5FA 0.46875 0.92
94 AQP 0.46875 0.92
95 GTA 0.468468 0.936709
96 7DD 0.468085 0.906667
97 G G G RPC 0.466102 0.875
98 SGP 0.463158 0.82716
99 01G 0.462963 0.902439
100 HFD 0.459184 0.873418
101 B4P 0.457447 0.894737
102 AP5 0.457447 0.894737
103 A2D 0.456522 0.894737
104 6YZ 0.455446 0.896104
105 G G G C 0.455285 0.9125
106 5GP 5GP 0.454545 0.883117
107 ANP 0.454545 0.896104
108 ACQ 0.454545 0.896104
109 AT4 0.452632 0.884615
110 A G C C 0.451613 0.911392
111 APC G U 0.45082 0.886076
112 PRT 0.449541 0.959459
113 G U34 0.449153 0.888889
114 DG DG 0.448598 0.865854
115 ITT 0.447917 0.868421
116 BA3 0.446809 0.894737
117 C2E 0.444444 0.921053
118 PCG 0.444444 0.933333
119 35G 0.444444 0.933333
120 MGO 0.441176 0.864198
121 AN2 0.4375 0.907895
122 G C C C 0.4375 0.924051
123 M33 0.43299 0.883117
124 UCG 0.429688 0.911392
125 A G U 0.42963 0.888889
126 ACP 0.428571 0.896104
127 MGQ 0.424528 0.935897
128 AR6 0.424242 0.894737
129 7DT 0.424242 0.906667
130 APR 0.424242 0.894737
131 93A 0.42268 0.833333
132 A4P 0.420168 0.869048
133 G8D 0.42 0.875
134 AD9 0.42 0.896104
135 SAP 0.42 0.873418
136 AGS 0.42 0.873418
137 CA0 0.418367 0.896104
138 ATF 0.417476 0.884615
139 AGO 0.414634 0.888889
140 A G U U 0.414286 0.888889
141 NIA 0.413043 0.82716
142 MGV 0.412844 0.890244
143 TAT 0.411765 0.884615
144 T99 0.411765 0.884615
145 ADQ 0.411215 0.871795
146 A1R 0.411215 0.839506
147 RGT 0.410714 0.909091
148 CGP 0.409836 0.86747
149 C1Z 0.409091 0.986486
150 A 0.408602 0.893333
151 AMP 0.408602 0.893333
152 UP5 0.40678 0.873418
153 AMZ 0.406593 0.918919
154 C2R 0.406593 0.906667
155 JBT 0.405882 0.778947
156 A22 0.40566 0.907895
157 25L 0.405405 0.907895
158 ADX 0.40404 0.809524
159 8OD 0.401961 0.946667
160 50T 0.4 0.883117
161 4TC 0.4 0.851852
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found with APoc: 657
This union binding pocket(no: 1) in the query (biounit: 1d2e.bio1) has 16 residues
No: Leader PDB Ligand Sequence Similarity
1 4WZ6 ATP 0.689655
2 3N5C GDP 1.23457
3 1D5C GDP 1.23457
4 6AU6 GDP 1.32626
5 1S3G AP5 1.38249
6 1R0X ATP 1.3986
7 2VVG ADP 1.42857
8 2BIF ANP 1.51134
9 2BIF SIN 1.51134
10 3P4X ADP 1.51134
11 5Y6N ADP 1.51134
12 1Z6T ADP 1.51134
13 3FJO FMN 1.51134
14 4DDY DN6 1.52091
15 6DEF GCP 1.53453
16 3EWA ANP 1.5528
17 3FKQ ATP 1.60858
18 3AQ4 GDP 1.63043
19 2Y65 ADP 1.64384
20 4KBF AMP 1.64384
21 5ZXD ATP 1.76322
22 1R6B ADP 1.76322
23 4IOK ADP 1.76322
24 2XAU ADP 1.76322
25 2FSH ANP 1.76322
26 6FAA ADP 1.76322
27 4DP3 MMV 1.76322
28 4DP3 NDP 1.76322
29 1K6M AGS 1.76322
30 4IOK XPO 1.76322
31 4LIK CIT 1.78571
32 1O3Y GTP 1.80723
33 1J2J GTP 1.80723
34 4FRZ ADP 1.81347
35 5MEX SZZ 1.86335
36 5MEX PAP 1.86335
37 5BYK OAQ 1.9305
38 5BYK A3P 1.9305
39 3PCR GTP 1.96078
40 5TIV A3P 1.97628
41 6CS8 F9Y 1.9802
42 2ODE ALF GDP 2
43 5GOE GDP 2.01511
44 5YV5 ADP 2.01511
45 1YQT ADP 2.01511
46 1M2O GNP 2.01511
47 1QF5 RPL 2.01511
48 1QF5 GDP 2.01511
49 4LYA ATP 2.01511
50 4OHY ANP 2.01511
51 2FAH GDP 2.01511
52 5VGR GDP 2.01511
53 1OYY AGS 2.01511
54 5XQL C2E 2.06186
55 4NE2 SH2 2.09581
56 4NE2 ADP 2.09581
57 2PZ8 APC 2.11268
58 3B7G ANP 2.17391
59 2ZFI ADP 2.18579
60 4ZNL BEF ADP 2.18978
61 4M9Q GNP 2.20264
62 1ZUA NAP 2.2082
63 1ZUA TOL 2.2082
64 1ZCB GDP 2.20994
65 5CK5 GDP 2.21519
66 1G41 ADP 2.267
67 5XDR ADP 2.267
68 1SQ5 ADP 2.27273
69 4LHW GNP 2.29885
70 2O0J ADP 2.33766
71 3FIU POP 2.40964
72 3TK1 GDP 2.42424
73 2GCO GNP 2.48756
74 2GCN GDP 2.48756
75 5XKT GNP 2.5
76 5WRI A3P 2.5
77 5KSZ GCP 2.51889
78 5I34 GDP 2.51889
79 5AK0 8V1 2.51889
80 2IS6 ADP 2.51889
81 5IRN ADP 2.51889
82 1YTM ATP 2.51889
83 4PJ3 ANP 2.51889
84 4YS0 ADP 2.51889
85 1LVG ADP 2.52525
86 3LRE ADP 2.53521
87 5U32 GDP 2.54237
88 1FNN ADP 2.57069
89 2OBM ADP 2.59366
90 3DC4 ADP 2.61628
91 5WRJ A3P 2.64026
92 1Z06 GNP 2.6455
93 4H1V GNP 2.71003
94 3QVV A3P 2.71186
95 3QVV 3QV 2.71186
96 2ZPT A3P 2.71186
97 1G6H ADP 2.72374
98 1G6O ADP 2.72727
99 1XP8 AGS 2.73224
100 4NU0 AP5 2.76498
101 1NST A3P 2.76923
102 1V8K ANP 2.77078
103 2GMV UN8 2.77078
104 2GMV PEP 2.77078
105 1NHX FTB 2.77078
106 1NHX PEP 2.77078
107 4ZG4 VO4 ADP 2.77078
108 1Q19 APC 2.77078
109 3V2U ATP 2.77078
110 4DKX GDP 2.77778
111 3TMK T5A 2.77778
112 2ZTS ADP 2.78884
113 1VKJ A3P 2.80702
114 6BSX GDP 2.80899
115 6BSX E7S 2.80899
116 4TMK T5A 2.8169
117 4BQS K2Q 2.84091
118 4BQS ADP 2.84091
119 2YOH WMJ 2.85714
120 5K5Z ANP 2.86624
121 4E03 ADP 2.91262
122 1GWN GTP 2.92683
123 5H68 AGS 2.94118
124 4LJ9 ACP 2.94985
125 1RYH GNP 2.95567
126 2ORV 4TA 2.99145
127 2F9L GDP 3.01508
128 5JCP GDP ALF 3.02267
129 4WZA ADP 3.02267
130 4WZA ACP 3.02267
131 5LB3 ADP 3.02267
132 1IHU AF3 3.02267
133 5MZN ADP 3.02267
134 1IHU ADP 3.02267
135 2IXE ATP 3.02267
136 4RZ3 ADP 3.05085
137 4YDS ATP 3.07018
138 2HF9 GSP 3.09735
139 1OW3 GDP 3.10881
140 4TL6 ANP 3.16206
141 4D81 ADP 3.18021
142 2XT3 ADP 3.19767
143 5DXV NAP 3.20513
144 3SBD GNP 3.20856
145 3BD9 A3P 3.21429
146 4FCW ADP 3.21543
147 5IRC GDP 3.22581
148 1MH1 GNP 3.22581
149 3LXR GDP 3.24324
150 5UPK GNP 3.24324
151 4WEI GLC GAL 3.2491
152 2JJK R15 3.25444
153 1M7B GTP 3.26087
154 1KMQ GNP 3.26087
155 1TQ4 GDP 3.27456
156 4HSE ADP 3.27456
157 4XFR CIT 3.27456
158 3T5G GDP 3.28947
159 5HGZ ACO 3.29218
160 2WKQ GTP 3.31325
161 4YC7 GNP 3.31492
162 1H65 GDP 3.33333
163 4JLV ADP 3.34572
164 4XSH GSP 3.35196
165 2Y8E GNP 3.35196
166 2Z5F A3P 3.3557
167 2GWH A3P 3.3557
168 1AQU A3P 3.367
169 2FJU GSP 3.37079
170 4U5X GNP 3.37079
171 3MD0 GDP 3.38028
172 1KUV CA5 3.38164
173 1TX4 ALF GDP 3.38983
174 1JJV ATP 3.39806
175 1G3M PCQ 3.40136
176 1G3M A3P 3.40136
177 5X40 ACP 3.42466
178 4PPF FLC 3.42857
179 3DEF GDP 3.43511
180 2QZ4 ADP 3.43511
181 2ZR9 DTP 3.4384
182 3UIE ANP 3.5
183 1XKV ATP 3.52645
184 4XGU ADP 3.52645
185 6B4K ANP 3.52645
186 1G16 GDP 3.52941
187 1YVD GNP 3.5503
188 1U8Z GDP 3.57143
189 4Q1A 2XZ 3.57143
190 4Q1A UDP 3.57143
191 3CPJ GDP 3.58744
192 1P72 ADP 3.59281
193 3NHB ADP 3.59477
194 3REF GDP 3.60825
195 5M04 GDP 3.61111
196 4P4T GDP 3.61111
197 3T34 GDP 3.61111
198 6B8B ADP 3.61446
199 5LEF GTP 3.66492
200 3BFX A3P 3.71622
201 4D0N GDP 3.75335
202 4IHQ ADP 3.77834
203 2ZPA ADP 3.77834
204 1P3D ANP 3.77834
205 2ZEJ GDP 3.80435
206 2PL3 ADP 3.81356
207 5HCN GCP 3.83142
208 3QKT ANP 3.83481
209 3SFV GDP 3.8674
210 2PZE ATP 3.93013
211 1GOJ ADP 3.94366
212 2XTZ GSP 3.9548
213 1SVK ALF GDP 3.96601
214 6BC0 GSP 4
215 3NKV GNP 4
216 3QF7 ANP 4
217 5HH0 COA 4
218 1Q20 A3P 4.01338
219 1Q20 PLO 4.01338
220 2G77 GDP 4.03023
221 6A20 ADP 4.03023
222 1X6V ADP 4.03023
223 4YJ1 ADP 4.03023
224 5FHD ADP ALF 4.03023
225 5LTJ ADP 4.03023
226 5FTB ANP 4.03023
227 5I0H ADP BEF 4.03023
228 5LTJ BEF 4.03023
229 2VB6 ADP BEF 4.03023
230 2QZS ADP 4.03023
231 2QZS 250 4.03023
232 2QZS GLC 4.03023
233 4PFO ADP 4.03023
234 1UAD GNP 4.0404
235 6FA4 GNP 4.04624
236 4AG5 ADP 4.08163
237 3PQC GDP 4.10256
238 1W4R TTP 4.10256
239 3LOO B4P 4.10959
240 1IIM TTP 4.10959
241 1YZQ GNP 4.11765
242 1FP6 ADP 4.15225
243 4LC1 GDP 4.1543
244 5AHO TLA 4.16667
245 5E5U MLI 4.16667
246 2A5J GDP 4.18848
247 1CJW COT 4.21687
248 3A4M ADP 4.23077
249 1SVM ATP 4.24403
250 1Y3A GDP 4.25532
251 5ZBR ANP 4.26667
252 5GVR LMR 4.2735
253 3HU3 AGS 4.28212
254 1F5N GNP 4.28212
255 5IFS ADP 4.28212
256 3RC3 ANP 4.28212
257 4ZDJ UTP 4.28212
258 5TVJ COA 4.28212
259 5TVJ 7LF 4.28212
260 1BG2 ADP 4.30769
261 1YZN GNP 4.32432
262 2ZE7 AMP 4.34783
263 2ZE7 DST 4.34783
264 1GXU 2HP 4.3956
265 1FZQ GDP 4.41989
266 1UKZ ADP 4.4335
267 3IIJ ADP 4.44444
268 1BH2 GSP 4.44444
269 2AWN ADP 4.46194
270 1Z0F GDP 4.46927
271 1XMV ADP 4.49438
272 2V5K OXM 4.52962
273 2NYA MGD 4.53401
274 2GDJ ANP 4.54545
275 1X8J A3P 4.5584
276 4D0G GTP 4.57143
277 1Z0A GDP 4.5977
278 1JJ7 ADP 4.61538
279 4NON GDP 4.61538
280 4DID GDP 4.66321
281 4V03 ADP 4.66926
282 1UPT GTP 4.67836
283 2FFQ GSP 4.67836
284 3MGB PAP 4.70219
285 1EK0 GNP 4.70588
286 1R2Q GNP 4.70588
287 1CS4 GSP 4.71698
288 1CR1 TTP 4.72973
289 5KSP GDP 4.73684
290 2WMO GTP 4.73684
291 5UQW GDP 4.7619
292 5OCG GNP 4.7619
293 5BQ5 ADP BEF 4.7619
294 1IWE IMP 4.78589
295 2WHX ADP 4.78589
296 2JLR ANP 4.78589
297 1VG0 GDP 4.83092
298 1VG8 GNP 4.83092
299 2RGX AP5 4.85437
300 5TB5 GDP 4.86486
301 5TAR GDP 4.86486
302 3TKL GTP 4.86891
303 1T5C ADP 4.87106
304 5J1S ATP 4.87805
305 1ION ADP 4.93827
306 2W58 ADP 4.9505
307 4H6U ACO 5
308 2C9O ADP 5.03778
309 5K04 COA 5.03778
310 3CV2 OXL 5.03778
311 2FNA ADP 5.04202
312 1VHT BA3 5.04587
313 1G3Q ADP 5.06329
314 5OEC GDP 5.07614
315 1KO8 6PG 5.14286
316 1OFH ADP 5.16129
317 5HPY GDP 5.17241
318 2B8W ALF 5GP 5.18293
319 4ZI2 GNP 5.18518
320 4YLG GDP 5.20231
321 5LLB 6YZ 5.20446
322 4CVN ADP 5.2356
323 1XX6 ADP 5.2356
324 3RLF ANP 5.26316
325 5UIV ADP 5.28634
326 2GKS ADP 5.28967
327 3EZ2 ADP 5.28967
328 2F3R G5P 5.31401
329 1RRC ADP 5.31561
330 5O2T GSP 5.32544
331 1YRB GDP 5.34351
332 3CNL GNP 5.34351
333 1GUA GNP 5.38922
334 1VG1 GDP 5.40541
335 1VG9 GDP 5.40541
336 1E96 GTP 5.41872
337 1RE0 GDP 5.42986
338 1Y63 ADP 5.43478
339 2QQ0 ANP 5.43478
340 2QQ0 THM 5.43478
341 2QQ0 ADP 5.43478
342 2QQ0 TMP 5.43478
343 6BCB GSP 5.47945
344 1G4U GDP 5.48303
345 4BAS GNP 5.52764
346 5M7P ADP 5.54156
347 1W7J ADP BEF 5.54156
348 1XPJ TLA 5.55556
349 1NJF ADP 5.6
350 1NJF AGS 5.6
351 3E5H GNP 5.61798
352 4B9E FAH 5.64784
353 1QF9 C5P 5.6701
354 1QF9 ADP 5.6701
355 1QF9 ALF 5.6701
356 5Z2M GTP 5.68182
357 5XC5 GTP 5.68182
358 2EW1 GNP 5.79345
359 2GJ8 ALF GDP 5.81395
360 5G41 AP5 5.8296
361 5WDR GNP 5.84795
362 5SZH GNP 5.88235
363 1KAO GDP 5.98802
364 2QEN ADP 6
365 1LVK MNT BEF 6.04534
366 3FWY ADP 6.05096
367 3E70 GDP 6.09756
368 2QTV GNP 6.12245
369 3Q9L ATP 6.15385
370 4KAX GTP 6.21118
371 1OXV ANP 6.23229
372 2OFW ADX 6.25
373 5H67 ATP 6.25
374 2QX0 PH2 6.28931
375 1ZD9 GDP 6.29723
376 2NCD ADP 6.29723
377 1P9B GDP 6.29723
378 1UH4 GLC GLC GLC GLC GLC GLC 6.29723
379 1AKY AP5 6.36364
380 1ZIN AP5 6.45161
381 4MKF AP5 6.45161
382 1J99 AND 6.48464
383 4V0K GDP 6.50888
384 1NN5 ANP 6.51163
385 1NN5 2DT 6.51163
386 4TTQ ATP 6.51163
387 3DKP ADP 6.53061
388 3ZIA ATP 6.55738
389 3ZIA ADP 6.55738
390 1F6B GDP 6.56566
391 3IO3 ADP 6.6092
392 3QXC ATP 6.61157
393 5L3R GCP 6.64452
394 4WOP CTP 6.66667
395 2VBQ BSJ 6.66667
396 3FVQ ATP 6.68524
397 1DAK DPU 6.69643
398 1DAK ADP 6.69643
399 2B8T THM 6.72646
400 4XVU ATP 6.77966
401 3ZS9 ADP ALF 6.77966
402 2WOJ ADP ALF 6.77966
403 1OS1 ATP 6.80101
404 1OS1 PYR 6.80101
405 3TBK ANP 6.80101
406 4HUT ATP 6.80628
407 3SXN COA 6.87204
408 3CX8 GSP 6.89655
409 1T3D CYS 6.92042
410 3BFV ADP 7.01107
411 5EE5 GTP 7.01754
412 2QG6 NMN 7.03518
413 3EEL 53T 7.04846
414 2I4I AMP 7.0529
415 1Z08 GNP 7.05882
416 1M7G AV2 7.109
417 1M7G ADX 7.109
418 1M7G ADP 7.109
419 2WC1 FMN 7.14286
420 2A9K GDP 7.17489
421 1E2K TMC 7.25076
422 2PEZ DAT 7.26257
423 2PEZ GGZ 7.26257
424 1R4A GNP 7.27273
425 4KVA GTP 7.28155
426 4IDN GNP 7.30479
427 5L3V GDP 7.35786
428 4U00 ADP 7.37705
429 4RHS SIA SIA GAL 7.37705
430 3H4S ADP 7.40741
431 4XOI GTP 7.40741
432 1JI0 ATP 7.5
433 5K2M ADP 7.54717
434 2FH5 GTP 7.56757
435 3COB ADP 7.58808
436 4QM7 GTP 7.60234
437 4GOX A3P 7.66773
438 1B7T ADP 7.69231
439 2A5F GTP 7.77202
440 2W83 GTP 7.79221
441 5IRR GSP 7.79221
442 2OG2 MLI 7.79944
443 2JAQ DCP 7.80488
444 1W0J ADP 7.80856
445 1W0J ADP BEF 7.80856
446 3KJS NAP 7.80856
447 1NF3 GNP 7.8125
448 1YZG GDP 7.82123
449 4OI4 ATP 7.82609
450 2NGR GDP 7.8534
451 1A4R GNH 7.8534
452 1GRN GDP 7.8534
453 1A4R GDP 7.8534
454 4ITR GDP 7.8534
455 1S8F GDP 7.9096
456 1UJ2 C5P 7.93651
457 1UJ2 ADP 7.93651
458 1ZC3 GNP 7.9646
459 2D2F ADP 8
460 5N69 ADP 8.0402
461 2GK6 ADP 8.06045
462 4A4Z ANP 8.06045
463 3T1O GDP 8.08081
464 3T12 GDP ALF 8.08081
465 1T8U A3P 8.08823
466 1T8U UAP SGN IDS SGN 8.08823
467 4XTR ADP 8.10811
468 4XTR ATP 8.10811
469 5O74 GDP 8.12183
470 1CXZ GSP 8.13953
471 1Z83 AP5 8.16327
472 4LPS GDP 8.26446
473 4HI0 GDP 8.26772
474 5BN3 ADP 8.31234
475 2CE7 ADP 8.31234
476 5HR5 ADP 8.31234
477 1TAD ALF 8.33333
478 1TAD GDP 8.33333
479 4GOJ GNP 8.33333
480 3FB4 AP5 8.33333
481 3ZQ6 ADP ALF 8.33333
482 1BO4 COA 8.33333
483 4HDO GNP 8.38323
484 4HDQ GNP 8.38323
485 3X1Z GNP 8.38323
486 1B0U ATP 8.39695
487 1ZJ6 G3D 8.55615
488 1KK8 BEF ADP 8.63309
489 2C5L GTP 8.67052
490 4K81 GTP 8.77193
491 1MKY GDP 8.81612
492 1TU3 GNP 8.86076
493 1PUJ GNP 8.86525
494 5E95 GDP 8.92857
495 2J59 GTP 8.92857
496 1Z2A GDP 8.92857
497 1ZUI SKM 8.92857
498 2CDN ADP 8.95522
499 6D5E GNP 8.98204
500 1LFD GNP 8.98204
501 6BVJ GNP 8.98204
502 6D5J GNP 8.98204
503 6D5G GNP 8.98204
504 6D56 GNP 8.98204
505 6D55 GNP 8.98204
506 6D5M GNP 8.98204
507 6BVL GNP 8.98204
508 6D59 GNP 8.98204
509 6D5L GNP 8.98204
510 6D5H GNP 8.98204
511 6BVI GNP 8.98204
512 6BVK GNP 8.98204
513 6D5V GNP 8.98204
514 6BVM GNP 8.98204
515 3KUD GDP 9.03614
516 1WQ1 GDP 9.03614
517 2UZI GTP 9.03614
518 1NVV GNP 9.03614
519 1CLU DBG 9.03614
520 4DCT GDP 9.06801
521 4BFW ZVW 9.1195
522 2IYL GDP 9.15493
523 6G14 G4P 9.18367
524 3QBT GNP 9.1954
525 3TNF GNP 9.1954
526 3IUY AMP 9.21053
527 4PX9 ADP 9.24658
528 3B9Q MLI 9.27152
529 1RJ9 GCP 9.33333
530 2OZE AGS 9.39597
531 4KM2 TOP 9.49721
532 4KM2 ATR 9.49721
533 5KUT GDP 9.52381
534 5DQY BEZ 9.52381
535 1OE0 TTP 9.56522
536 6C0B MLI 9.61539
537 2EFE GNH 9.73783
538 3AB3 GDP 9.7561
539 2Q2Y ADP 9.80926
540 2Q2Y MKR 9.80926
541 2XTN GTP 9.82906
542 3KJI ADP 9.84252
543 5MVR ADP 9.87654
544 2J0V GDP 9.90566
545 2KIN ADP 10
546 2RCN GDP 10.0559
547 1X1R GDP 10.0756
548 4R43 GDP 10.0756
549 3VX3 ADP 10.0806
550 1NRJ GTP 10.0917
551 2CBZ ATP 10.1266
552 3Q72 GNP 10.241
553 1SVI GDP 10.2564
554 3B5J 12D 10.2881
555 5TSH ADP 10.3275
556 5TSH ANP 10.3275
557 4KFU ACP 10.3774
558 4YMU ATP 10.4167
559 4R2I ANP 10.4762
560 4QRH 0O2 10.4762
561 2W2X GSP 10.4839
562 5KDO GDP 10.8108
563 3RWO GDP 10.8108
564 2CJW GDP 10.9375
565 1GOT GDP 10.9589
566 2DPY ADP 11.0831
567 3ZFD ANP 11.396
568 4UXH T5A 11.413
569 3H86 AP5 11.4583
570 1L2T ATP 11.4894
571 4GDX GLU 11.4973
572 1F9V ADP 11.5274
573 4X8O AP5 11.6822
574 5WC2 ADP 11.8388
575 1Z0J GTP 11.8644
576 5DI3 GNP 11.8919
577 6BCA GSP 11.9205
578 4MKG AP5 11.9816
579 5L3W GDP 12.0915
580 2X77 GDP 12.1693
581 4R98 GNH 12.1771
582 1FQK GDP 12.2449
583 4GBM A3P 12.3839
584 5NM7 GLY 12.406
585 5L3S GNP 12.5
586 5JCZ GDP 12.8492
587 3IA4 NDP 12.963
588 4LX0 BEF GDP 12.9944
589 3RAB GNP 13.0178
590 2WZF BGC 13.0982
591 2WIC GNP 13.1086
592 4C4P GNP 13.2948
593 1S9D GDP 13.3005
594 1HE1 GDP 13.3333
595 1WDT GTP 13.3501
596 2HT6 GDP 13.7931
597 1DS6 GDP 13.8889
598 3DDC GNP 14.1104
599 1OIV GDP 14.1361
600 1FQJ GDP 14.2857
601 2BCG GDP 14.3577
602 3BER AMP 14.4578
603 1OIX GDP 14.6597
604 6H5E ANP 14.741
605 2D7D ADP 15
606 3KTA AP5 15.6069
607 1HTW ADP 15.8228
608 4TMZ GSP 15.942
609 5J1J ANP 16.1404
610 1XEX ATP 16.2791
611 3M1I GTP 16.4384
612 3WYF GTP 16.4384
613 4KVG GTP 16.9231
614 3EC1 GDP 17.0732
615 2IL4 COA 17.4757
616 1WF3 GNP 17.608
617 5WLB GNP 17.6471
618 2HV8 GTP 18.0233
619 5G3Y ADP 18.1416
620 5ZB0 TYD 18.1818
621 5ZB0 ADP 18.1818
622 3A1S GDP 18.2171
623 5H7J GCP 18.3879
624 5H7K GDP 18.3879
625 2D7C GTP 18.5629
626 4ZKD GDP 19.1436
627 6CRK GDP 19.7183
628 1GP2 GDP 19.7183
629 3WYG GTP 19.7802
630 1KY3 GDP 20.3297
631 1WA5 GTP 20.4545
632 6C90 ADP 21.1538
633 3GJ0 GDP 21.267
634 1MR3 G3D 21.547
635 5BXQ GDP 21.7593
636 3CH5 GDP 21.7593
637 1IBR GNP 21.7593
638 3GJX GTP 21.7593
639 3BC1 GNP 22.0339
640 1D2N ANP 22.0588
641 2OM2 GDP 22.2222
642 3DOE GTP 22.3958
643 1KSH GDP 22.5806
644 5VHC BEF ADP 23.1738
645 2BME GNP 24.1935
646 2WJG GDP 25.5319
647 2WJH GDP 28.9157
648 2WJH FLC 28.9157
649 1Z0K GTP 29.6512
650 3Q85 GNP 30.7692
651 1I4D GDP 31.6964
652 3W5J GDP 35.2941
653 2V7Q ATP 36
654 2CK3 ANP 36
655 2V7Q ADP 36
656 2CK3 ADP 36
657 3MJH GTP 38.2353
Pocket No.: 2; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found with APoc: 14
This union binding pocket(no: 2) in the query (biounit: 1d2e.bio1) has 19 residues
No: Leader PDB Ligand Sequence Similarity
1 2J5V PCA 1.3624
2 5AWV GHP 3MY 3FG GHP GHP OMY 3FG NAG MAN 2.267
3 2UUU PL3 3.27456
4 2UUU FAD 3.27456
5 6HQD SRT 3.27456
6 2G77 AF3 4.03023
7 2ZJ5 ADP 4.28212
8 2VWT PYR 5.61798
9 1P9B HDA 6.29723
10 3ITJ CIT 7.39645
11 1WQ1 AF3 9.03614
12 3L6C MLI 11.2094
13 6AIC AMP 13.0841
14 1FQJ ALF 14.2857
Pocket No.: 3; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found with APoc: 8
This union binding pocket(no: 3) in the query (biounit: 1d2e.bio1) has 17 residues
No: Leader PDB Ligand Sequence Similarity
1 4IXH IMP 1.66205
2 4OR7 NAP 3.0303
3 3BY9 SIN 3.07692
4 1LDN FBP 3.48101
5 6F7L FAD 3.61991
6 5H4S RAM 4.57746
7 5L3S G 12.5
8 1HDG NAD 14.1566
Pocket No.: 4; Query (leader) PDB : 1D2E; Ligand: GDP; Similar sites found with APoc: 3
This union binding pocket(no: 4) in the query (biounit: 1d2e.bio1) has 18 residues
No: Leader PDB Ligand Sequence Similarity
1 4X7Y SAH 3.28467
2 5DRB 5FJ 3.78007
3 5ZI9 FLC 4.61538
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