Receptor
PDB id Resolution Class Description Source Keywords
3M94 2.05 Å NON-ENZYME: TRANSCRIPT_TRANSLATE COMPLEX CRYSTAL STRUCTURE OF ASCARIS SUUM EIF4E-3 WITH M2,2, TRANSLATION INITIATION FACTOR 4E ASCARIS SUUM
Ref.: STRUCTURAL BASIS FOR NEMATODE EIF4E BINDING AN M2,2 AND ITS IMPLICATIONS FOR TRANSLATION INITIATION. NUCLEIC ACIDS RES. V. 39 8820 2011
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
ACE C:0;
 Invalid;
 none;
 submit data
44.053 C2 H4 O CC=O
M7M A:1;
 Valid;
 none;
 submit data
487.296 C13 H23 N5 O11 P2 CN1CN...
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
3M94 2.05 Å NON-ENZYME: TRANSCRIPT_TRANSLATE COMPLEX CRYSTAL STRUCTURE OF ASCARIS SUUM EIF4E-3 WITH M2,2, TRANSLATION INITIATION FACTOR 4E ASCARIS SUUM
Ref.: STRUCTURAL BASIS FOR NEMATODE EIF4E BINDING AN M2,2 AND ITS IMPLICATIONS FOR TRANSLATION INITIATION. NUCLEIC ACIDS RES. V. 39 8820 2011
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 308 families.
1 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 266 families.
1 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
50% Homology Family (8)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 220 families.
1 1WKW - GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
2 3HXG Kd = 0.27 uM GTA C21 H30 N10 O17 P3 C[n+]1cn(c....
3 1EJ4 - M7G C11 H19 N5 O11 P2 CN1CN(C2=C....
4 2V8W Kd = 146 nM MGO C12 H20 N4 O14 P3 C[n+]1cn(c....
5 2V8Y Kd = 1.96 uM MGV C17 H20 F N5 O8 P c1cc(ccc1C....
6 2V8X Kd = 6.95 uM MGQ C17 H21 N5 O8 P c1ccc(cc1)....
7 3M94 - M7M C13 H23 N5 O11 P2 CN1CN(C2=C....
8 2JGB Ka = 410000 M^-1 MGT C11 H20 N5 O14 P3 CN1CN(C2=C....
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: M7M; Similar ligands found: 6
No: Ligand ECFP6 Tc MDL keys Tc
1 M7M 1 1
2 M7G 0.541667 0.963855
3 MGT 0.49505 0.963855
4 CDP 0.412371 0.797619
5 UDP 0.40625 0.771084
6 TPG 0.401515 0.931818
Similar Ligands (3D)
Ligand no: 1; Ligand: M7M; Similar ligands found: 2
No: Ligand Similarity coefficient
1 GDP 0.9212
2 5GP 0.8647
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 3M94; Ligand: M7M; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 3m94.bio1) has 9 residues
No: Leader PDB Ligand Sequence Similarity
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