Receptor
PDB id Resolution Class Description Source Keywords
6R41 2.21 Å NON-ENZYME: OTHER STRUCTURE OF P110 FROM MYCOPLASMA GENITALIUM COMPLEXED WITH MYCOPLASMA GENITALIUM (STRAIN ATCC 335/ NCTC 10195) ADHESIN SUGAR BINDING PROTEIN
Ref.: MYCOPLASMA GENITALIUM ADHESIN P110 BINDS SIALIC-ACI RECEPTORS. NAT COMMUN V. 9 4471 2018
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
GOL A:1006;
Invalid;
none;
submit data
92.094 C3 H8 O3 C(C(C...
PO4 A:1005;
Invalid;
none;
submit data
94.971 O4 P [O-]P...
K A:1001;
Part of Protein;
none;
submit data
39.098 K [K+]
GAL BGC SIA B:1;
Valid;
none;
submit data
n/a n/a
View in 3D viewer
90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
6R41 2.21 Å NON-ENZYME: OTHER STRUCTURE OF P110 FROM MYCOPLASMA GENITALIUM COMPLEXED WITH MYCOPLASMA GENITALIUM (STRAIN ATCC 335/ NCTC 10195) ADHESIN SUGAR BINDING PROTEIN
Ref.: MYCOPLASMA GENITALIUM ADHESIN P110 BINDS SIALIC-ACI RECEPTORS. NAT COMMUN V. 9 4471 2018
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1610 families.
1 6R41 - GAL BGC SIA n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1331 families.
1 6R41 - GAL BGC SIA n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 1144 families.
1 6R41 - GAL BGC SIA n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: GAL BGC SIA; Similar ligands found: 0
No: Ligand ECFP6 Tc MDL keys Tc
Similar Ligands (3D)
Ligand no: 1; Ligand: GAL BGC SIA; Similar ligands found: 4
No: Ligand Similarity coefficient
1 GAL BGC SIA 0.9995
2 GLC GAL SIA 0.9156
3 NAG GAL SIA 0.8989
4 NAG 2FG SIA 0.8802
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 6R41; Ligand: GAL BGC SIA; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 6r41.bio1) has 11 residues
No: Leader PDB Ligand Sequence Similarity
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