Receptor
PDB id Resolution Class Description Source Keywords
2DJH 1.9 Å EC: 3.1.-.- CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 ESCHERICHIA COLI ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL BASIS FOR SEQUENCE-DEPENDENT RECOGNITION OF COLICIN E5 TRNASE BY MIMICKING THE MRNA-TRNA INTERACTION NUCLEIC ACIDS RES. V. 34 6074 2006
Ligand
Ligand Chain:Residue Validity Ligand Warnings Binding Data NGL Viewer Molecular Weight (Da) Formula SMILES
3PD UM3 A:117;
 Valid;
 none;
 submit data
634.368 n/a P(=O)...
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90% Homology Family
Leader
PDB id Resolution Class Description Source Keywords
2DJH 1.9 Å EC: 3.1.-.- CRYSTAL STRUCTURE OF THE CARBOXY-TERMINAL RIBONUCLEASE DOMAIN OF COLICIN E5 ESCHERICHIA COLI ALPHA/BETA PROTEIN HYDROLASE
Ref.: STRUCTURAL BASIS FOR SEQUENCE-DEPENDENT RECOGNITION OF COLICIN E5 TRNASE BY MIMICKING THE MRNA-TRNA INTERACTION NUCLEIC ACIDS RES. V. 34 6074 2006
Members (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 31 families.
1 2DJH - 3PD UM3 n/a n/a
70% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 25 families.
1 2DJH - 3PD UM3 n/a n/a
50% Homology Family (1)
No: PDB id Binding Data Representative ligand Formula Smiles
The Class containing this family consists of a total of 22 families.
1 2DJH - 3PD UM3 n/a n/a
Polypharmacology
Similar Ligands (2D)
Ligand no: 1; Ligand: 3PD UM3; Similar ligands found: 19
No: Ligand ECFP6 Tc MDL keys Tc
1 3PD UM3 1 1
2 DU DU DU DU BRU DG DU 0.798319 0.940476
3 DU DU DU DU BRU DA DU 0.527397 0.83908
4 CGP 0.507576 0.951219
5 DU DU DU DU BRU DU DU 0.496063 0.755814
6 DGI 0.474138 0.86747
7 DG 0.473214 0.878049
8 DGP 0.473214 0.878049
9 UM3 0.447619 0.8
10 DGT 0.446281 0.86747
11 U2G 0.437956 0.903614
12 DT MA7 DT 0.433333 0.860465
13 G C 0.41844 0.938272
14 139 0.414286 0.869048
15 PUA 0.410959 0.879518
16 OMC OMU OMG OMG U 0.405063 0.882353
17 ALF 5GP 0.403226 0.816092
18 UCG 0.4 0.902439
19 GDP BEF 0.4 0.855422
Similar Ligands (3D)
Ligand no: 1; Ligand: 3PD UM3; Similar ligands found: 0
No: Ligand Similarity coefficient
Similar Binding Sites (Proteins are less than 50% similar to leader)
Pocket No.: 1; Query (leader) PDB : 2DJH; Ligand: 3PD UM3; Similar sites found with APoc: No similar binding sites found, or similarity not calculated due to duplicate pocket.
This union binding pocket(no: 1) in the query (biounit: 2djh.bio1) has 22 residues
No: Leader PDB Ligand Sequence Similarity
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